Wall clock time and date at job start Tue Mar 31 2020 18:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00192 * 2 1 4 4 H 1.09003 * 109.47538 * 24.89973 * 3 2 1 5 5 C 1.50699 * 109.47028 * 144.89712 * 3 2 1 6 6 O 1.21281 * 120.00246 * 5.00701 * 5 3 2 7 7 N 1.34776 * 120.00080 * 185.00013 * 5 3 2 8 8 C 1.46499 * 120.00240 * 180.02562 * 7 5 3 9 9 H 1.08998 * 110.92003 * 37.44737 * 8 7 5 10 10 C 1.54911 * 111.00418 * 273.54649 * 8 7 5 11 11 N 1.47422 * 104.83495 * 204.91152 * 10 8 7 12 12 C 1.36935 * 125.65172 * 204.15987 * 11 10 8 13 13 H 1.08000 * 120.00110 * 333.82019 * 12 11 10 14 14 C 1.38818 * 119.99984 * 153.81321 * 12 11 10 15 15 N 1.31614 * 119.99918 * 156.96566 * 14 12 11 16 16 Si 1.86805 * 119.99912 * 336.96750 * 14 12 11 17 17 H 1.48504 * 109.47062 * 91.31593 * 16 14 12 18 18 H 1.48497 * 109.46741 * 211.31563 * 16 14 12 19 19 H 1.48500 * 109.46848 * 331.31234 * 16 14 12 20 20 C 1.47027 * 108.70190 * 24.13073 * 11 10 8 21 21 C 1.54325 * 107.39948 * 358.86084 * 20 11 10 22 22 H 1.08996 * 110.72282 * 219.51906 * 21 20 11 23 23 N 1.46508 * 110.71908 * 96.25067 * 21 20 11 24 24 C 1.35307 * 125.86572 * 326.16094 * 23 21 20 25 25 C 1.35356 * 106.17529 * 179.90576 * 24 23 21 26 26 N 1.33774 * 106.49303 * 0.35818 * 25 24 23 27 27 N 1.28631 * 108.88883 * 359.77141 * 26 25 24 28 28 C 1.53001 * 109.47367 * 264.89734 * 3 2 1 29 29 C 1.53002 * 117.49764 * 9.19562 * 28 3 2 30 30 C 1.53001 * 117.50081 * 300.53225 * 28 3 2 31 31 H 1.08992 * 109.46833 * 294.85226 * 1 2 3 32 32 H 1.09001 * 109.46646 * 54.84704 * 1 2 3 33 33 H 1.08990 * 109.47448 * 174.84371 * 1 2 3 34 34 H 0.97001 * 120.00112 * 0.02562 * 7 5 3 35 35 H 1.09002 * 110.36625 * 86.07236 * 10 8 7 36 36 H 1.08998 * 110.36723 * 323.75515 * 10 8 7 37 37 H 0.97004 * 120.00102 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.88054 * 118.35375 * 20 11 10 39 39 H 1.09000 * 109.88412 * 239.36886 * 20 11 10 40 40 H 1.08001 * 126.91712 * 0.02637 * 24 23 21 41 41 H 1.07993 * 126.75147 * 180.12591 * 25 24 23 42 42 H 1.09001 * 115.54825 * 154.86011 * 28 3 2 43 43 H 1.09001 * 117.49829 * 359.97438 * 29 28 3 44 44 H 1.08996 * 117.50198 * 145.02207 * 29 28 3 45 45 H 1.08999 * 117.50030 * 214.98004 * 30 28 3 46 46 H 1.09000 * 117.49253 * 0.02562 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3066 2.0166 0.4327 5 6 3.2765 1.2914 0.8170 6 8 3.6936 0.2472 1.2714 7 7 3.9455 2.4394 1.0428 8 6 5.1767 2.4258 1.8365 9 1 5.7638 1.5312 1.6290 10 6 4.8637 2.5459 3.3489 11 7 6.0841 3.1218 3.9424 12 6 6.4750 2.9909 5.2483 13 1 5.7371 2.8207 6.0183 14 6 7.8196 3.0768 5.5822 15 7 8.1739 3.4046 6.8067 16 14 9.1262 2.7272 4.2937 17 1 9.4992 3.9922 3.6111 18 1 10.3252 2.1465 4.9496 19 1 8.5928 1.7650 3.2963 20 6 6.8125 3.8595 2.8998 21 6 6.0160 3.7096 1.5865 22 1 6.6896 3.5742 0.7403 23 7 5.1423 4.8664 1.3753 24 6 4.5187 5.5763 2.3438 25 6 3.8230 6.5490 1.7098 26 7 4.0457 6.3838 0.4011 27 7 4.8313 5.3786 0.2361 28 6 2.3350 1.7192 -1.4368 29 6 1.8100 0.8281 -2.5643 30 6 3.3028 0.8345 -2.2252 31 1 -0.3633 0.4319 0.9324 32 1 -0.3633 0.5917 -0.8403 33 1 -0.3634 -1.0234 -0.0923 34 1 3.6118 3.2747 0.6796 35 1 4.6628 1.5625 3.7740 36 1 4.0142 3.2099 3.5089 37 1 9.1136 3.4650 7.0400 38 1 6.8837 4.9126 3.1720 39 1 7.8110 3.4399 2.7777 40 1 4.5678 5.4030 3.4087 41 1 3.2062 7.3068 2.1698 42 1 2.3719 2.7931 -1.6198 43 1 1.2337 -0.0532 -2.2825 44 1 1.5021 1.3156 -3.4892 45 1 3.9762 1.3263 -2.9271 46 1 3.7078 -0.0425 -1.7203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128944968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:02 Heat of formation + Delta-G solvation = 78.458398 kcal Electronic energy + Delta-G solvation = -30575.819479 eV Core-core repulsion = 26505.060708 eV Total energy + Delta-G solvation = -4070.758771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.37357 -41.51314 -40.09644 -38.85018 -36.89586 -35.95337 -34.89377 -33.89069 -31.96976 -31.30642 -30.30327 -29.15787 -27.13314 -26.39864 -24.39025 -23.63889 -23.42394 -22.94477 -22.17070 -21.74925 -21.21043 -19.45904 -18.97108 -18.43301 -18.04927 -17.53898 -17.37000 -17.08364 -16.53669 -16.11972 -15.86672 -15.68570 -15.52853 -15.44167 -15.23349 -14.84205 -14.74355 -14.57209 -14.26159 -13.82871 -13.65451 -13.42875 -13.02880 -12.90180 -12.76939 -12.66487 -12.54758 -12.38414 -12.37541 -12.30041 -11.93101 -11.80154 -11.62144 -11.39796 -11.20616 -10.88773 -10.78923 -10.57259 -10.35263 -10.32818 -9.14822 -8.26098 -5.60000 0.55758 1.12670 1.24921 1.37924 1.39841 1.45634 1.59719 1.64407 2.34242 2.67547 2.80854 2.89399 3.01679 3.13307 3.21828 3.51550 3.60903 3.65690 3.72590 3.81164 3.90895 4.03919 4.14599 4.19178 4.22098 4.29202 4.34439 4.45016 4.51250 4.52794 4.54211 4.70800 4.76453 4.77134 4.80073 4.83596 4.94782 5.10859 5.14142 5.26874 5.26978 5.56399 5.60630 5.94460 6.04696 6.28139 6.61564 7.00641 7.40386 7.48533 7.92907 8.93307 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012760 B = 0.004102 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.745204 B = 6824.508311 C = 7882.883855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.383 6.383 3 C 0.107 3.893 4 H 0.113 0.887 5 C 0.519 3.481 6 O -0.558 6.558 7 N -0.702 5.702 8 C 0.136 3.864 9 H 0.111 0.889 10 C 0.122 3.878 11 N -0.610 5.610 12 C -0.241 4.241 13 H 0.062 0.938 14 C -0.017 4.017 15 N -0.942 5.942 16 Si 0.930 3.070 17 H -0.266 1.266 18 H -0.307 1.307 19 H -0.260 1.260 20 C 0.115 3.885 21 C 0.137 3.863 22 H 0.154 0.846 23 N -0.281 5.281 24 C -0.032 4.032 25 C -0.049 4.049 26 N -0.287 5.287 27 N -0.104 5.104 28 C -0.185 4.185 29 C -0.145 4.145 30 C -0.180 4.180 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.407 0.593 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.266 0.734 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.190 0.810 41 H 0.220 0.780 42 H 0.132 0.868 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.106 0.894 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.710 1.259 -18.505 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.301 6.301 3 C 0.045 3.955 4 H 0.130 0.870 5 C 0.306 3.694 6 O -0.435 6.435 7 N -0.356 5.356 8 C 0.028 3.972 9 H 0.129 0.871 10 C -0.003 4.003 11 N -0.338 5.338 12 C -0.369 4.369 13 H 0.080 0.920 14 C -0.214 4.214 15 N -0.586 5.586 16 Si 0.759 3.241 17 H -0.192 1.192 18 H -0.235 1.235 19 H -0.185 1.185 20 C -0.011 4.011 21 C 0.034 3.966 22 H 0.172 0.828 23 N -0.075 5.075 24 C -0.183 4.183 25 C -0.206 4.206 26 N -0.153 5.153 27 N -0.083 5.083 28 C -0.203 4.203 29 C -0.181 4.181 30 C -0.217 4.217 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.244 0.756 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.207 0.793 41 H 0.237 0.763 42 H 0.150 0.850 43 H 0.118 0.882 44 H 0.135 0.865 45 H 0.124 0.876 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.993 0.242 -19.531 24.027 hybrid contribution 0.837 0.176 1.458 1.690 sum -13.157 0.417 -18.072 22.358 Atomic orbital electron populations 1.23152 0.78580 1.04433 1.01446 1.87999 1.21955 1.25355 1.94748 1.21377 0.92455 0.87428 0.94197 0.86965 1.20985 0.85937 0.82969 0.79526 1.90732 1.68730 1.32386 1.51659 1.45601 1.25500 1.10539 1.53997 1.22399 0.86254 0.96987 0.91588 0.87133 1.22177 0.90030 0.97510 0.90631 1.44537 1.24687 1.58396 1.06153 1.18399 0.91600 1.45559 0.81337 0.92033 1.25723 0.98874 0.99413 0.97421 1.69939 1.17443 1.49903 1.21340 0.86109 0.79009 0.79289 0.79702 1.19241 1.23528 1.18548 1.21997 0.94920 0.97856 0.86334 1.22964 0.91198 0.81383 1.01057 0.82846 1.47368 1.32429 1.22314 1.05416 1.24034 0.99609 0.96229 0.98401 1.24078 1.04811 1.02137 0.89572 1.75075 1.11864 1.10130 1.18268 1.78303 1.14765 1.07968 1.07276 1.22741 1.08002 0.99018 0.90557 1.23022 0.95852 1.01297 0.97960 1.22889 0.94006 1.01446 1.03336 0.93294 0.91471 0.88133 0.75616 0.93722 0.93257 0.92509 0.92352 0.93651 0.79266 0.76324 0.84981 0.88156 0.86464 0.87559 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.99 113.37 1.13 1.42 16 2 O -0.38 -9.02 8.59 -129.99 -1.12 -10.13 16 3 C 0.11 2.28 2.96 29.85 0.09 2.37 16 4 H 0.11 1.84 7.76 -2.39 -0.02 1.82 16 5 C 0.52 14.89 6.84 87.66 0.60 15.49 16 6 O -0.56 -21.31 16.25 15.96 0.26 -21.05 16 7 N -0.70 -18.17 5.14 -435.56 -2.24 -20.41 16 8 C 0.14 4.09 3.18 46.47 0.15 4.23 16 9 H 0.11 3.65 7.73 -2.39 -0.02 3.63 16 10 C 0.12 4.41 6.41 86.86 0.56 4.97 16 11 N -0.61 -25.70 3.09 -691.97 -2.14 -27.84 16 12 C -0.24 -12.68 10.52 84.04 0.88 -11.80 16 13 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 14 C -0.02 -0.95 5.42 84.86 0.46 -0.49 16 15 N -0.94 -55.89 13.97 21.65 0.30 -55.59 16 16 Si 0.93 42.73 24.58 68.60 1.69 44.42 16 17 H -0.27 -11.35 7.01 99.48 0.70 -10.65 16 18 H -0.31 -14.61 7.11 99.48 0.71 -13.90 16 19 H -0.26 -11.37 6.94 99.48 0.69 -10.68 16 20 C 0.11 4.10 4.92 86.73 0.43 4.53 16 21 C 0.14 3.82 3.99 46.26 0.18 4.00 16 22 H 0.15 3.56 8.14 -2.39 -0.02 3.54 16 23 N -0.28 -7.38 2.27 -321.12 -0.73 -8.10 16 24 C -0.03 -0.80 9.24 83.49 0.77 -0.03 16 25 C -0.05 -1.10 12.06 83.73 1.01 -0.09 16 26 N -0.29 -7.57 12.41 -58.26 -0.72 -8.29 16 27 N -0.10 -2.80 12.49 37.02 0.46 -2.34 16 28 C -0.18 -3.21 5.80 -10.79 -0.06 -3.27 16 29 C -0.14 -2.16 9.46 30.62 0.29 -1.87 16 30 C -0.18 -3.50 9.82 30.62 0.30 -3.20 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.69 7.57 -2.39 -0.02 0.67 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.41 9.37 6.94 -92.71 -0.64 8.73 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.66 7.14 -2.39 -0.02 1.64 16 37 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.06 2.13 7.43 -2.39 -0.02 2.12 16 39 H 0.05 1.74 3.37 -2.39 -0.01 1.73 16 40 H 0.19 5.05 7.56 -2.91 -0.02 5.03 16 41 H 0.22 3.23 8.06 -2.91 -0.02 3.20 16 42 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.10 1.59 6.29 -2.39 -0.02 1.57 16 44 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -69.35 371.81 2.90 -66.45 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.34 Total: 26.64 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 6.79 Total: 16.26 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -5.06 Total: -122.57 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.86 Total: -31.18 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.69 Total: 44.42 kcal Total: -69.35 2.90 -66.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128944968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.906 kcal (2) G-P(sol) polarization free energy of solvation -69.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds