Wall clock time and date at job start Tue Mar 31 2020 18:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 119.99696 * 2 1 4 4 O 1.21276 * 120.00297 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99708 * 180.02562 * 3 2 1 6 6 C 1.50698 * 109.47284 * 180.02562 * 5 3 2 7 7 O 1.21284 * 119.99694 * 359.97438 * 6 5 3 8 8 N 1.34779 * 120.00339 * 180.02562 * 6 5 3 9 9 C 1.46504 * 119.99853 * 179.72423 * 8 6 5 10 10 C 1.50704 * 109.46761 * 180.27302 * 9 8 6 11 11 C 1.35315 * 126.03836 * 259.68799 * 10 9 8 12 12 N 1.34951 * 107.74610 * 179.87439 * 11 10 9 13 13 H 0.97001 * 126.03854 * 180.14596 * 12 11 10 14 14 N 1.40086 * 107.92123 * 0.38880 * 12 11 10 15 15 C 1.30834 * 108.20723 * 359.75957 * 14 12 11 16 16 C 1.50699 * 125.89831 * 180.02562 * 15 14 12 17 17 H 1.08999 * 110.64255 * 183.11596 * 16 15 14 18 18 C 1.55157 * 110.72208 * 59.97092 * 16 15 14 19 19 C 1.54905 * 101.58289 * 206.13400 * 18 16 15 20 20 N 1.47428 * 104.83465 * 37.01328 * 19 18 16 21 21 C 1.36937 * 125.65433 * 155.90603 * 20 19 18 22 22 H 1.07996 * 119.99428 * 353.89818 * 21 20 19 23 23 C 1.38809 * 120.00277 * 173.90133 * 21 20 19 24 24 N 1.31622 * 119.99718 * 6.82558 * 23 21 20 25 25 Si 1.86797 * 119.99978 * 186.83016 * 23 21 20 26 26 H 1.48499 * 109.47212 * 94.98241 * 25 23 21 27 27 H 1.48496 * 109.46972 * 214.98555 * 25 23 21 28 28 H 1.48501 * 109.47327 * 334.98138 * 25 23 21 29 29 C 1.47029 * 108.69772 * 335.86761 * 20 19 18 30 30 H 1.08992 * 109.47616 * 59.99561 * 1 2 3 31 31 H 1.09000 * 109.47276 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46664 * 299.99416 * 1 2 3 33 33 H 0.96995 * 119.99948 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.47596 * 60.00320 * 5 3 2 35 35 H 1.09000 * 109.47121 * 299.99861 * 5 3 2 36 36 H 0.96993 * 119.99722 * 359.97438 * 8 6 5 37 37 H 1.08997 * 109.46898 * 300.27213 * 9 8 6 38 38 H 1.09000 * 109.46996 * 60.27110 * 9 8 6 39 39 H 1.07998 * 126.12607 * 0.02771 * 11 10 9 40 40 H 1.08999 * 111.00602 * 324.21089 * 18 16 15 41 41 H 1.08998 * 111.00061 * 88.02180 * 18 16 15 42 42 H 1.09001 * 110.36665 * 155.84731 * 19 18 16 43 43 H 1.08992 * 110.37404 * 278.17059 * 19 18 16 44 44 H 0.97001 * 119.99303 * 179.97438 * 24 23 21 45 45 H 1.08999 * 109.87908 * 241.63927 * 29 20 19 46 46 H 1.08997 * 109.87783 * 120.47882 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1482 2.5880 0.0002 7 8 3.3600 3.5099 0.0006 8 7 5.4732 2.8344 -0.0007 9 6 5.9615 4.2156 -0.0061 10 6 7.4685 4.2156 -0.0127 11 6 8.2694 4.4140 1.0598 12 7 9.5488 4.3344 0.6381 13 1 10.3393 4.4343 1.1913 14 7 9.5337 4.0876 -0.7408 15 6 8.2865 4.0166 -1.1297 16 6 7.8131 3.7635 -2.5378 17 1 6.7254 3.8092 -2.5915 18 6 8.3312 2.3950 -3.0536 19 6 8.3544 2.6282 -4.5848 20 7 8.7831 4.0295 -4.7467 21 6 9.3864 4.5564 -5.8573 22 1 9.6746 3.9100 -6.6731 23 6 9.6276 5.9212 -5.9346 24 7 9.4010 6.6896 -4.8903 25 14 10.2735 6.6671 -7.5207 26 1 9.1360 7.1814 -8.3250 27 1 11.1990 7.7837 -7.2016 28 1 10.9990 5.6293 -8.2964 29 6 8.4546 4.7678 -3.5183 30 1 -0.3634 0.5138 -0.8898 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.9500 -0.8400 -0.0004 34 1 4.0089 0.6537 -0.8908 35 1 4.0095 0.6532 0.8892 36 1 6.1035 2.0971 -0.0014 37 1 5.5942 4.7273 -0.8956 38 1 5.6020 4.7315 0.8843 39 1 7.9431 4.5999 2.0724 40 1 9.3320 2.1881 -2.6746 41 1 7.6425 1.5922 -2.7904 42 1 9.0686 1.9558 -5.0601 43 1 7.3593 2.4849 -5.0056 44 1 9.5700 7.6433 -4.9443 45 1 7.7494 5.5677 -3.7441 46 1 9.3626 5.1836 -3.0818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130380845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:30 Heat of formation + Delta-G solvation = 34.758932 kcal Electronic energy + Delta-G solvation = -28796.009940 eV Core-core repulsion = 24723.356217 eV Total energy + Delta-G solvation = -4072.653723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.19083 -40.27749 -38.65955 -37.24958 -35.00898 -34.56183 -32.92038 -31.76266 -31.24788 -30.11587 -28.86357 -27.47626 -26.87383 -25.25840 -24.58562 -22.01246 -21.24951 -20.37112 -20.11400 -20.05294 -18.55331 -18.02392 -17.54944 -16.93137 -16.74269 -16.16908 -15.68408 -15.41617 -15.15143 -14.82327 -14.39463 -14.27833 -14.03709 -13.69538 -13.60115 -13.37226 -13.20936 -12.68613 -12.58580 -12.55542 -12.32275 -12.22192 -11.88216 -11.70087 -11.53983 -10.91434 -10.80393 -10.73082 -10.41517 -10.27782 -10.11177 -9.91953 -9.77968 -9.59949 -9.53413 -9.36415 -8.96370 -8.94431 -8.48621 -8.44526 -6.72466 -5.63510 -2.95464 1.98343 2.46511 2.63307 2.75303 2.95200 3.04071 3.46008 3.50679 3.52924 3.59900 4.36074 4.57237 4.72562 4.82618 4.84512 4.90127 4.95136 5.07822 5.22906 5.28209 5.40175 5.48349 5.51831 5.59243 5.61420 5.73713 5.91044 5.99111 6.05966 6.12041 6.21231 6.34275 6.42651 6.49991 6.61178 6.70715 6.85870 7.01978 7.18728 7.40986 7.56564 7.66512 7.70823 7.92685 7.98020 8.05592 8.34499 8.35453 9.30076 9.91318 10.58077 11.48639 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012419 B = 0.002751 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.007032 B =10177.109954 C =11467.671681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.743 5.743 3 C 0.510 3.490 4 O -0.490 6.490 5 C -0.166 4.166 6 C 0.509 3.491 7 O -0.499 6.499 8 N -0.725 5.725 9 C 0.204 3.796 10 C -0.262 4.262 11 C 0.073 3.927 12 N -0.482 5.482 13 H 0.437 0.563 14 N -0.274 5.274 15 C 0.126 3.874 16 C -0.045 4.045 17 H 0.084 0.916 18 C -0.117 4.117 19 C 0.133 3.867 20 N -0.605 5.605 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.918 5.918 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.281 1.281 29 C 0.191 3.809 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.400 0.600 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.398 0.602 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.173 0.827 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.038 0.962 43 H 0.019 0.981 44 H 0.251 0.749 45 H 0.045 0.955 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.545 -16.378 17.176 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.397 5.397 3 C 0.293 3.707 4 O -0.361 6.361 5 C -0.209 4.209 6 C 0.293 3.707 7 O -0.372 6.372 8 N -0.379 5.379 9 C 0.081 3.919 10 C -0.274 4.274 11 C -0.077 4.077 12 N -0.188 5.188 13 H 0.281 0.719 14 N -0.096 5.096 15 C -0.043 4.043 16 C -0.067 4.067 17 H 0.102 0.898 18 C -0.157 4.157 19 C 0.007 3.993 20 N -0.332 5.332 21 C -0.355 4.355 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.565 5.565 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.207 1.207 29 C 0.065 3.935 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.233 0.767 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.232 0.768 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.190 0.810 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.036 0.964 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.299 -14.706 16.751 24.152 hybrid contribution 0.587 -0.237 -0.123 0.645 sum -8.712 -14.943 16.628 23.993 Atomic orbital electron populations 1.21497 0.79567 1.01998 1.02423 1.45801 1.07737 1.08510 1.77693 1.20082 0.89317 0.83957 0.77303 1.90882 1.69414 1.30417 1.45430 1.21596 0.94620 0.98092 1.06615 1.19884 0.82564 0.90423 0.77855 1.90873 1.54489 1.45302 1.46499 1.46149 1.06329 1.09285 1.76088 1.19356 0.87663 0.82307 1.02621 1.19929 0.95672 1.18975 0.92861 1.22328 0.85025 1.00787 0.99541 1.46375 1.06795 1.57599 1.07985 0.71942 1.77560 1.20345 1.23281 0.88392 1.22180 0.89709 0.96333 0.96049 1.21088 0.99602 0.98376 0.87597 0.89822 1.22760 1.00546 0.94922 0.97435 1.21560 0.96920 0.88103 0.92709 1.44454 1.70180 1.04142 1.14419 1.19045 1.31640 0.90931 0.93918 0.90435 1.24822 1.01828 0.96170 0.97638 1.69979 1.54410 1.04463 1.27684 0.86135 0.78064 0.78838 0.82967 1.21659 1.21887 1.20694 1.21196 0.98306 0.90284 0.83689 0.92210 0.90777 0.92338 0.76711 0.85956 0.86288 0.76771 0.90424 0.91201 0.81015 0.91273 0.92354 0.94338 0.96362 0.93840 0.93697 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.70 59.85 0.64 1.21 16 2 N -0.74 -5.00 5.71 -67.08 -0.38 -5.38 16 3 C 0.51 5.47 7.82 -10.99 -0.09 5.38 16 4 O -0.49 -8.14 14.18 -18.96 -0.27 -8.41 16 5 C -0.17 -1.26 6.19 -29.04 -0.18 -1.44 16 6 C 0.51 6.26 7.82 -10.99 -0.09 6.17 16 7 O -0.50 -8.89 14.18 -18.96 -0.27 -9.16 16 8 N -0.72 -7.67 5.55 -61.47 -0.34 -8.01 16 9 C 0.20 2.60 5.68 -5.19 -0.03 2.57 16 10 C -0.26 -3.50 5.47 -105.05 -0.57 -4.07 16 11 C 0.07 0.78 11.90 -17.22 -0.20 0.58 16 12 N -0.48 -5.94 7.36 30.45 0.22 -5.71 16 13 H 0.44 3.86 8.96 -182.61 -1.64 2.22 16 14 N -0.27 -4.81 12.31 33.67 0.41 -4.40 16 15 C 0.13 2.13 5.78 -82.41 -0.48 1.65 16 16 C -0.05 -0.86 3.36 -89.94 -0.30 -1.16 16 17 H 0.08 1.51 7.25 -51.93 -0.38 1.14 16 18 C -0.12 -2.05 6.52 -24.58 -0.16 -2.21 16 19 C 0.13 2.79 7.23 -2.53 -0.02 2.77 16 20 N -0.61 -15.93 3.40 -170.07 -0.58 -16.51 16 21 C -0.23 -6.51 10.26 -15.06 -0.15 -6.67 16 22 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 23 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 24 N -0.92 -27.91 10.36 55.49 0.58 -27.34 16 25 Si 0.91 22.73 29.56 -169.99 -5.02 17.71 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 C 0.19 4.79 4.96 -3.06 -0.02 4.77 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.40 1.20 8.83 -40.82 -0.36 0.84 16 34 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.40 3.28 8.46 -40.82 -0.35 2.94 16 37 H 0.08 1.18 7.67 -51.93 -0.40 0.78 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.07 1.27 7.99 -51.93 -0.41 0.86 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.04 1.26 7.37 -51.93 -0.38 0.88 16 46 H 0.05 1.52 6.96 -51.93 -0.36 1.16 16 LS Contribution 384.09 15.07 5.79 5.79 Total: -1.00 -41.17 384.09 -9.66 -50.83 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.05 Total: 1.36 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -1.74 Total: 9.22 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: -0.09 Total: -67.34 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.54 Total: -17.56 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -41.17 -9.66 -50.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130380845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.587 kcal (2) G-P(sol) polarization free energy of solvation -41.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds