Wall clock time and date at job start Tue Mar 31 2020 18:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 119.99696 * 2 1 4 4 O 1.21276 * 120.00297 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99708 * 180.02562 * 3 2 1 6 6 C 1.50698 * 109.47284 * 180.02562 * 5 3 2 7 7 O 1.21284 * 119.99694 * 359.97438 * 6 5 3 8 8 N 1.34779 * 120.00339 * 180.02562 * 6 5 3 9 9 C 1.46504 * 119.99853 * 179.72423 * 8 6 5 10 10 C 1.50704 * 109.46761 * 180.27302 * 9 8 6 11 11 C 1.35315 * 126.03836 * 259.68799 * 10 9 8 12 12 N 1.34951 * 107.74610 * 179.87439 * 11 10 9 13 13 H 0.97001 * 126.03854 * 180.14596 * 12 11 10 14 14 N 1.40086 * 107.92123 * 0.38880 * 12 11 10 15 15 C 1.30834 * 108.20723 * 359.75957 * 14 12 11 16 16 C 1.50699 * 125.89831 * 180.02562 * 15 14 12 17 17 H 1.08999 * 110.64255 * 183.11596 * 16 15 14 18 18 C 1.55157 * 110.72208 * 59.97092 * 16 15 14 19 19 C 1.54905 * 101.58289 * 206.13400 * 18 16 15 20 20 N 1.47428 * 104.83465 * 37.01328 * 19 18 16 21 21 C 1.36937 * 125.65433 * 155.90603 * 20 19 18 22 22 H 1.07996 * 119.99428 * 353.89818 * 21 20 19 23 23 C 1.38809 * 120.00277 * 173.90133 * 21 20 19 24 24 N 1.31622 * 119.99718 * 6.82558 * 23 21 20 25 25 Si 1.86797 * 119.99978 * 186.83016 * 23 21 20 26 26 H 1.48499 * 109.47212 * 94.98241 * 25 23 21 27 27 H 1.48496 * 109.46972 * 214.98555 * 25 23 21 28 28 H 1.48501 * 109.47327 * 334.98138 * 25 23 21 29 29 C 1.47029 * 108.69772 * 335.86761 * 20 19 18 30 30 H 1.08992 * 109.47616 * 59.99561 * 1 2 3 31 31 H 1.09000 * 109.47276 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46664 * 299.99416 * 1 2 3 33 33 H 0.96995 * 119.99948 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.47596 * 60.00320 * 5 3 2 35 35 H 1.09000 * 109.47121 * 299.99861 * 5 3 2 36 36 H 0.96993 * 119.99722 * 359.97438 * 8 6 5 37 37 H 1.08997 * 109.46898 * 300.27213 * 9 8 6 38 38 H 1.09000 * 109.46996 * 60.27110 * 9 8 6 39 39 H 1.07998 * 126.12607 * 0.02771 * 11 10 9 40 40 H 1.08999 * 111.00602 * 324.21089 * 18 16 15 41 41 H 1.08998 * 111.00061 * 88.02180 * 18 16 15 42 42 H 1.09001 * 110.36665 * 155.84731 * 19 18 16 43 43 H 1.08992 * 110.37404 * 278.17059 * 19 18 16 44 44 H 0.97001 * 119.99303 * 179.97438 * 24 23 21 45 45 H 1.08999 * 109.87908 * 241.63927 * 29 20 19 46 46 H 1.08997 * 109.87783 * 120.47882 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1482 2.5880 0.0002 7 8 3.3600 3.5099 0.0006 8 7 5.4732 2.8344 -0.0007 9 6 5.9615 4.2156 -0.0061 10 6 7.4685 4.2156 -0.0127 11 6 8.2694 4.4140 1.0598 12 7 9.5488 4.3344 0.6381 13 1 10.3393 4.4343 1.1913 14 7 9.5337 4.0876 -0.7408 15 6 8.2865 4.0166 -1.1297 16 6 7.8131 3.7635 -2.5378 17 1 6.7254 3.8092 -2.5915 18 6 8.3312 2.3950 -3.0536 19 6 8.3544 2.6282 -4.5848 20 7 8.7831 4.0295 -4.7467 21 6 9.3864 4.5564 -5.8573 22 1 9.6746 3.9100 -6.6731 23 6 9.6276 5.9212 -5.9346 24 7 9.4010 6.6896 -4.8903 25 14 10.2735 6.6671 -7.5207 26 1 9.1360 7.1814 -8.3250 27 1 11.1990 7.7837 -7.2016 28 1 10.9990 5.6293 -8.2964 29 6 8.4546 4.7678 -3.5183 30 1 -0.3634 0.5138 -0.8898 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.9500 -0.8400 -0.0004 34 1 4.0089 0.6537 -0.8908 35 1 4.0095 0.6532 0.8892 36 1 6.1035 2.0971 -0.0014 37 1 5.5942 4.7273 -0.8956 38 1 5.6020 4.7315 0.8843 39 1 7.9431 4.5999 2.0724 40 1 9.3320 2.1881 -2.6746 41 1 7.6425 1.5922 -2.7904 42 1 9.0686 1.9558 -5.0601 43 1 7.3593 2.4849 -5.0056 44 1 9.5700 7.6433 -4.9443 45 1 7.7494 5.5677 -3.7441 46 1 9.3626 5.1836 -3.0818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130380845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:29 Heat of formation + Delta-G solvation = 0.797011 kcal Electronic energy + Delta-G solvation = -28797.482639 eV Core-core repulsion = 24723.356217 eV Total energy + Delta-G solvation = -4074.126422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.29170 -41.13421 -39.55758 -38.98343 -35.94794 -35.38929 -34.77761 -33.03394 -32.40148 -31.00277 -30.61313 -29.17823 -27.56119 -26.61385 -26.11637 -23.46343 -22.08552 -21.93831 -21.36334 -20.99309 -19.95746 -19.00621 -18.80987 -18.29698 -17.73709 -16.98668 -16.89134 -16.59472 -16.20063 -16.14341 -15.80222 -15.68159 -15.32951 -14.83851 -14.40052 -14.31019 -14.25661 -14.15697 -13.93219 -13.67230 -13.52459 -13.36640 -13.25053 -13.01415 -12.83324 -12.70588 -12.69245 -12.25818 -12.06526 -11.83755 -11.70483 -11.60542 -11.20780 -11.14987 -10.70545 -10.51030 -10.19446 -10.02686 -9.91644 -9.48130 -8.85700 -7.84186 -5.18460 1.01876 1.43615 1.46792 1.55249 1.57630 1.72873 1.86377 2.07753 2.18963 2.50266 2.80341 3.33967 3.60334 3.69363 3.81595 3.91864 4.06014 4.14359 4.20915 4.24556 4.38964 4.48262 4.50758 4.57745 4.62525 4.67766 4.68134 4.74718 4.89556 4.95895 5.00965 5.05141 5.13332 5.18943 5.47539 5.48762 5.53936 5.58866 5.60998 5.69973 5.81378 6.22303 6.55804 6.66402 6.76852 6.84378 7.11013 7.39197 7.53245 7.80412 8.45638 9.26665 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012419 B = 0.002751 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.007032 B =10177.109954 C =11467.671681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.724 5.724 3 C 0.499 3.501 4 O -0.562 6.562 5 C -0.153 4.153 6 C 0.503 3.497 7 O -0.563 6.563 8 N -0.709 5.709 9 C 0.212 3.788 10 C -0.272 4.272 11 C 0.104 3.896 12 N -0.468 5.468 13 H 0.453 0.547 14 N -0.325 5.325 15 C 0.108 3.892 16 C -0.030 4.030 17 H 0.089 0.911 18 C -0.098 4.098 19 C 0.124 3.876 20 N -0.630 5.630 21 C -0.240 4.240 22 H 0.085 0.915 23 C -0.071 4.071 24 N -0.951 5.951 25 Si 0.978 3.022 26 H -0.288 1.288 27 H -0.297 1.297 28 H -0.264 1.264 29 C 0.203 3.797 30 H 0.040 0.960 31 H 0.114 0.886 32 H 0.044 0.956 33 H 0.422 0.578 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.414 0.586 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.224 0.776 40 H 0.060 0.940 41 H 0.108 0.892 42 H 0.046 0.954 43 H 0.030 0.970 44 H 0.244 0.756 45 H -0.003 1.003 46 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.213 -19.797 18.771 28.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.378 5.378 3 C 0.285 3.715 4 O -0.438 6.438 5 C -0.195 4.195 6 C 0.288 3.712 7 O -0.440 6.440 8 N -0.362 5.362 9 C 0.087 3.913 10 C -0.284 4.284 11 C -0.046 4.046 12 N -0.176 5.176 13 H 0.299 0.701 14 N -0.148 5.148 15 C -0.059 4.059 16 C -0.051 4.051 17 H 0.107 0.893 18 C -0.137 4.137 19 C -0.001 4.001 20 N -0.357 5.357 21 C -0.369 4.369 22 H 0.103 0.897 23 C -0.264 4.264 24 N -0.600 5.600 25 Si 0.806 3.194 26 H -0.215 1.215 27 H -0.224 1.224 28 H -0.189 1.189 29 C 0.077 3.923 30 H 0.059 0.941 31 H 0.132 0.868 32 H 0.063 0.937 33 H 0.259 0.741 34 H 0.176 0.824 35 H 0.184 0.816 36 H 0.251 0.749 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.241 0.759 40 H 0.079 0.921 41 H 0.127 0.873 42 H 0.064 0.936 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.015 0.985 46 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -8.915 -18.269 18.342 27.380 hybrid contribution 0.492 0.773 -0.569 1.079 sum -8.423 -17.496 17.773 26.324 Atomic orbital electron populations 1.21597 0.79449 1.04050 1.00866 1.45681 1.07975 1.08525 1.75641 1.20737 0.90780 0.83811 0.76157 1.90866 1.70946 1.33048 1.48975 1.21646 0.92145 0.95248 1.10451 1.20724 0.82269 0.91882 0.76279 1.90862 1.56058 1.47672 1.49401 1.45987 1.06312 1.08892 1.75050 1.19115 0.87314 0.83463 1.01404 1.19913 0.95743 1.20227 0.92524 1.22998 0.83549 0.97184 1.00875 1.46341 1.08303 1.56470 1.06463 0.70063 1.77450 1.21012 1.25048 0.91301 1.21909 0.90514 0.97840 0.95681 1.20771 0.99296 0.97248 0.87781 0.89304 1.22678 1.01349 0.95404 0.94271 1.21834 0.97281 0.85346 0.95613 1.44822 1.69996 1.06633 1.14203 1.19493 1.31079 0.91429 0.94902 0.89723 1.25720 1.02988 0.96808 1.00853 1.70242 1.55975 1.04068 1.29680 0.85060 0.77318 0.77913 0.79096 1.21487 1.22367 1.18856 1.20811 0.95604 0.91047 0.84788 0.94112 0.86803 0.93724 0.74093 0.82361 0.81615 0.74883 0.93894 0.90369 0.75943 0.92110 0.87331 0.93605 0.95198 0.94711 0.98467 0.96960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 10.70 127.77 1.37 2.33 16 2 N -0.72 -7.93 5.71 -484.53 -2.77 -10.70 16 3 C 0.50 9.99 7.82 87.66 0.69 10.68 16 4 O -0.56 -19.24 14.18 20.42 0.29 -18.95 16 5 C -0.15 -1.77 6.19 29.10 0.18 -1.59 16 6 C 0.50 11.59 7.82 87.66 0.69 12.28 16 7 O -0.56 -20.56 14.18 20.40 0.29 -20.27 16 8 N -0.71 -13.33 5.55 -466.77 -2.59 -15.91 16 9 C 0.21 5.19 5.68 85.63 0.49 5.68 16 10 C -0.27 -6.79 5.47 -20.14 -0.11 -6.90 16 11 C 0.10 1.89 11.90 83.54 0.99 2.88 16 12 N -0.47 -10.45 7.36 -57.59 -0.42 -10.88 16 13 H 0.45 6.82 8.96 -213.33 -1.91 4.91 16 14 N -0.33 -11.25 12.31 -47.39 -0.58 -11.84 16 15 C 0.11 3.60 5.78 43.10 0.25 3.85 16 16 C -0.03 -1.13 3.36 -10.35 -0.03 -1.17 16 17 H 0.09 3.25 7.25 -2.39 -0.02 3.23 16 18 C -0.10 -3.26 6.52 31.98 0.21 -3.05 16 19 C 0.12 5.10 7.23 86.85 0.63 5.72 16 20 N -0.63 -34.07 3.40 -691.99 -2.35 -36.42 16 21 C -0.24 -14.09 10.26 84.03 0.86 -13.23 16 22 H 0.08 4.70 7.84 -2.91 -0.02 4.68 16 23 C -0.07 -4.26 5.48 84.86 0.47 -3.80 16 24 N -0.95 -60.83 10.36 21.65 0.22 -60.61 16 25 Si 0.98 47.97 29.56 68.60 2.03 50.00 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 27 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 28 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 29 C 0.20 10.76 4.96 86.73 0.43 11.19 16 30 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.42 0.81 8.83 -92.71 -0.82 -0.01 16 34 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.17 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.41 5.18 8.46 -92.71 -0.78 4.40 16 37 H 0.04 1.36 7.67 -2.39 -0.02 1.34 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.06 2.14 7.99 -2.39 -0.02 2.12 16 41 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.24 15.20 8.31 -92.71 -0.77 14.43 16 45 H 0.00 -0.18 7.37 -2.39 -0.02 -0.19 16 46 H 0.01 0.74 6.96 -2.39 -0.02 0.72 16 Total: -1.00 -100.76 384.09 -1.26 -102.02 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -2.48 Total: 8.68 kcal Atomic # 6 Polarization: 17.77 SS G_CDS: 7.10 Total: 24.87 kcal Atomic # 7 Polarization: -137.86 SS G_CDS: -8.49 Total: -146.35 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: 0.58 Total: -39.22 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -100.76 -1.26 -102.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130380845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.818 kcal (2) G-P(sol) polarization free energy of solvation -100.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds