Wall clock time and date at job start Tue Mar 31 2020 18:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00109 * 2 1 4 4 C 1.50703 * 109.47254 * 293.95251 * 3 2 1 5 5 O 1.21293 * 119.99482 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00290 * 180.02562 * 4 3 2 7 7 C 1.37092 * 119.99729 * 180.27555 * 6 4 3 8 8 H 1.08002 * 120.00496 * 359.72414 * 7 6 4 9 9 C 1.38958 * 120.00096 * 179.72242 * 7 6 4 10 10 N 1.31414 * 119.99347 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00310 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47201 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47346 * 119.99877 * 11 9 7 14 14 H 1.48506 * 109.46753 * 239.99977 * 11 9 7 15 15 C 1.46903 * 110.99672 * 123.95011 * 2 1 3 16 16 H 1.08998 * 110.89128 * 295.34357 * 15 2 1 17 17 C 1.55153 * 111.00109 * 171.46288 * 15 2 1 18 18 C 1.54372 * 102.92287 * 206.45555 * 17 15 2 19 19 N 1.47020 * 107.28667 * 22.13691 * 18 17 15 20 20 C 1.34781 * 125.65124 * 181.12745 * 19 18 17 21 21 O 1.21280 * 120.00199 * 179.97438 * 20 19 18 22 22 C 1.50696 * 119.99443 * 359.96421 * 20 19 18 23 23 C 1.50704 * 109.46822 * 180.02562 * 22 20 19 24 24 C 1.34661 * 126.59330 * 85.02102 * 23 22 20 25 25 N 1.34132 * 108.02283 * 179.97438 * 24 23 22 26 26 C 1.30499 * 109.25437 * 0.02562 * 25 24 23 27 27 N 1.35047 * 108.69700 * 359.76840 * 26 25 24 28 28 H 0.96996 * 126.39155 * 180.27249 * 27 26 25 29 29 C 1.47429 * 108.70391 * 1.09692 * 19 18 17 30 30 H 1.08995 * 109.47123 * 59.99865 * 1 2 3 31 31 H 1.08995 * 109.47210 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46831 * 300.00580 * 1 2 3 33 33 H 1.08998 * 109.47322 * 173.95253 * 3 2 1 34 34 H 1.09002 * 109.47668 * 53.95450 * 3 2 1 35 35 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 36 36 H 0.97004 * 119.99790 * 179.97438 * 10 9 7 37 37 H 1.09000 * 110.72689 * 324.79009 * 17 15 2 38 38 H 1.09007 * 110.72400 * 88.06563 * 17 15 2 39 39 H 1.08997 * 109.84578 * 262.73231 * 18 17 15 40 40 H 1.08997 * 110.03424 * 141.64873 * 18 17 15 41 41 H 1.09000 * 109.47323 * 299.99728 * 22 20 19 42 42 H 1.09001 * 109.47747 * 59.99676 * 22 20 19 43 43 H 1.08004 * 125.99110 * 359.96720 * 24 23 22 44 44 H 1.07999 * 125.65106 * 179.97438 * 26 25 24 45 45 H 1.08998 * 110.36507 * 217.03354 * 29 19 18 46 46 H 1.08997 * 110.36765 * 94.70894 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0055 1.4452 -2.1411 6 7 2.0190 3.3198 -1.5238 7 6 1.6880 3.9363 -2.7027 8 1 1.1250 3.4007 -3.4527 9 6 2.0768 5.2504 -2.9327 10 7 2.7614 5.9023 -2.0198 11 14 1.6252 6.0906 -4.5387 12 1 0.8582 5.1479 -5.3920 13 1 0.7952 7.2888 -4.2543 14 1 2.8637 6.5031 -5.2468 15 6 1.9954 -0.7659 1.1377 16 1 1.7277 -0.2924 2.0822 17 6 3.5319 -0.9476 1.0225 18 6 3.7858 -2.2496 1.8120 19 7 2.5190 -2.9950 1.8443 20 6 2.3190 -4.1777 2.4589 21 8 1.2269 -4.7039 2.4207 22 6 3.4523 -4.8463 3.1934 23 6 2.9699 -6.1452 3.7861 24 6 2.9080 -7.3377 3.1635 25 7 2.4244 -8.2359 4.0344 26 6 2.1837 -7.6451 5.1728 27 7 2.5148 -6.3406 5.0621 28 1 2.4425 -5.6675 5.7568 29 6 1.5035 -2.2342 1.0936 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 3.0797 1.3444 0.1083 34 1 1.5612 1.9274 0.8309 35 1 2.5243 3.8010 -0.8500 36 1 3.0332 6.8195 -2.1804 37 1 3.8295 -1.0646 -0.0196 38 1 4.0550 -0.1089 1.4821 39 1 4.1014 -2.0108 2.8277 40 1 4.5530 -2.8437 1.3157 41 1 4.2683 -5.0453 2.4987 42 1 3.8052 -4.1917 3.9904 43 1 3.1970 -7.5361 2.1419 44 1 1.7886 -8.1214 6.0580 45 1 0.5301 -2.3228 1.5759 46 1 1.4509 -2.5860 0.0633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192551851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:32 Heat of formation + Delta-G solvation = 6.824566 kcal Electronic energy + Delta-G solvation = -28130.939695 eV Core-core repulsion = 24057.074647 eV Total energy + Delta-G solvation = -4073.865048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.34837 -40.32925 -38.79996 -37.70607 -35.53291 -33.87283 -33.17816 -32.26786 -31.28759 -30.97124 -29.39900 -27.71246 -27.17178 -25.28471 -23.92691 -22.87636 -21.90615 -21.30470 -20.38219 -19.72771 -19.14052 -18.10189 -17.88797 -17.55421 -16.86537 -16.00576 -15.83008 -15.35228 -14.85598 -14.80585 -14.67425 -14.49591 -14.18922 -13.99695 -13.80401 -13.64067 -13.59020 -13.36350 -13.07167 -12.92521 -12.87329 -12.37139 -12.25556 -11.95208 -11.54425 -11.47558 -11.19973 -11.08385 -10.99405 -10.84876 -10.36542 -10.34532 -10.29091 -10.25455 -10.13244 -9.52097 -8.91497 -8.68153 -8.52591 -8.03061 -7.93388 -6.45238 -3.85874 1.65313 2.33340 2.59266 2.84276 2.96878 3.13931 3.24996 3.32100 3.86108 3.88448 4.09488 4.19806 4.23105 4.42173 4.49058 4.52511 4.60751 4.81103 4.93720 5.00086 5.06957 5.11733 5.14218 5.23491 5.28532 5.32363 5.54541 5.59029 5.66090 5.72289 5.80583 5.81861 5.87015 5.89982 5.98205 6.04976 6.23576 6.43326 6.51418 7.03324 7.12640 7.23936 7.28936 7.52480 7.76982 7.87683 8.03193 8.58162 9.15109 9.50744 10.02463 10.72517 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.042714 B = 0.001759 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.358997 B =15915.591436 C =16164.117797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.506 5.506 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.576 6.576 6 N -0.564 5.564 7 C -0.298 4.298 8 H 0.104 0.896 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.281 1.281 15 C 0.068 3.932 16 H 0.054 0.946 17 C -0.127 4.127 18 C 0.101 3.899 19 N -0.618 5.618 20 C 0.526 3.474 21 O -0.528 6.528 22 C -0.059 4.059 23 C -0.009 4.009 24 C -0.005 4.005 25 N -0.494 5.494 26 C 0.187 3.813 27 N -0.563 5.563 28 H 0.418 0.582 29 C 0.117 3.883 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.016 0.984 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.168 0.832 44 H 0.208 0.792 45 H 0.076 0.924 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.629 -17.140 17.270 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.231 5.231 3 C -0.085 4.085 4 C 0.229 3.771 5 O -0.460 6.460 6 N -0.201 5.201 7 C -0.428 4.428 8 H 0.122 0.878 9 C -0.179 4.179 10 N -0.543 5.543 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.207 1.207 15 C -0.041 4.041 16 H 0.072 0.928 17 C -0.165 4.165 18 C -0.022 4.022 19 N -0.354 5.354 20 C 0.314 3.686 21 O -0.404 6.404 22 C -0.100 4.100 23 C -0.125 4.125 24 C -0.154 4.154 25 N -0.213 5.213 26 C -0.097 4.097 27 N -0.167 5.167 28 H 0.255 0.745 29 C -0.006 4.006 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.136 0.864 42 H 0.118 0.882 43 H 0.185 0.815 44 H 0.224 0.776 45 H 0.094 0.906 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.698 -18.819 16.068 25.188 hybrid contribution 0.027 2.562 1.004 2.752 sum 4.725 -16.257 17.072 24.043 Atomic orbital electron populations 1.22597 0.86314 1.01724 1.02251 1.61629 1.08871 1.12989 1.39575 1.21880 1.00792 0.88543 0.97317 1.19694 0.85517 0.82992 0.88887 1.90493 1.43864 1.64609 1.47062 1.41863 1.49337 1.10722 1.18162 1.19752 1.32835 0.95295 0.94887 0.87826 1.25260 0.96822 0.96643 0.99219 1.69619 1.38189 1.12142 1.34384 0.85804 0.78230 0.79032 0.81313 1.19204 1.20793 1.20747 1.22778 0.94929 0.93366 0.93069 0.92823 1.22760 0.95476 0.96041 1.02251 1.22121 0.86278 0.93227 1.00623 1.48448 1.12944 1.20603 1.53356 1.20144 0.89767 0.79621 0.79069 1.90766 1.26060 1.63008 1.60589 1.19993 0.97442 0.92168 1.00441 1.20440 1.08767 0.97113 0.86155 1.22045 1.04919 0.88573 0.99828 1.70287 1.17254 1.33143 1.00632 1.24948 1.04143 0.80914 0.99687 1.43192 1.49900 1.11554 1.12019 0.74481 1.22216 0.91600 0.89543 0.97193 0.88188 0.91996 0.96572 0.89249 0.93429 0.77534 0.91937 0.88751 0.89764 0.91352 0.90773 0.86366 0.88210 0.81501 0.77569 0.90587 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.01 60.07 0.54 0.83 16 2 N -0.51 -7.76 4.40 -233.75 -1.03 -8.78 16 3 C 0.05 0.76 5.34 -4.98 -0.03 0.73 16 4 C 0.44 9.99 7.51 -10.98 -0.08 9.91 16 5 O -0.58 -14.97 13.89 5.55 0.08 -14.89 16 6 N -0.56 -13.78 5.29 -10.96 -0.06 -13.83 16 7 C -0.30 -8.10 9.68 -14.93 -0.14 -8.25 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 10 N -0.90 -23.96 13.05 55.50 0.72 -23.23 16 11 Si 0.93 20.67 29.55 -169.99 -5.02 15.64 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 C 0.07 0.79 2.71 -65.56 -0.18 0.61 16 16 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 17 C -0.13 -1.15 5.47 -24.87 -0.14 -1.28 16 18 C 0.10 0.70 6.49 -3.04 -0.02 0.68 16 19 N -0.62 -6.07 3.33 -170.49 -0.57 -6.63 16 20 C 0.53 5.60 7.84 -10.99 -0.09 5.51 16 21 O -0.53 -8.03 16.29 5.56 0.09 -7.94 16 22 C -0.06 -0.39 5.45 -29.03 -0.16 -0.55 16 23 C -0.01 -0.08 5.73 -81.60 -0.47 -0.55 16 24 C -0.01 -0.06 11.79 -17.81 -0.21 -0.27 16 25 N -0.49 -5.78 11.25 -14.66 -0.16 -5.95 16 26 C 0.19 1.52 13.04 -90.37 -1.18 0.34 16 27 N -0.56 -3.98 6.15 -10.30 -0.06 -4.04 16 28 H 0.42 1.59 8.96 -40.82 -0.37 1.23 16 29 C 0.12 1.38 5.21 -2.53 -0.01 1.36 16 30 H 0.10 1.91 5.88 -51.93 -0.31 1.61 16 31 H 0.06 0.86 6.86 -51.93 -0.36 0.51 16 32 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 1.29 6.86 -51.93 -0.36 0.93 16 34 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 35 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 36 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.08 0.64 7.89 -51.92 -0.41 0.24 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 44 H 0.21 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.08 0.96 7.82 -51.93 -0.41 0.55 16 46 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 382.30 15.07 5.76 5.76 Total: -1.00 -36.29 382.30 -9.19 -45.48 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.68 Total: 8.86 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -2.26 Total: 9.56 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -1.16 Total: -62.48 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.17 Total: -22.83 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.29 -9.19 -45.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192551851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.305 kcal (2) G-P(sol) polarization free energy of solvation -36.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds