Wall clock time and date at job start Tue Mar 31 2020 18:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00109 * 2 1 4 4 C 1.50703 * 109.47254 * 293.95251 * 3 2 1 5 5 O 1.21293 * 119.99482 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00290 * 180.02562 * 4 3 2 7 7 C 1.37092 * 119.99729 * 180.27555 * 6 4 3 8 8 H 1.08002 * 120.00496 * 359.72414 * 7 6 4 9 9 C 1.38958 * 120.00096 * 179.72242 * 7 6 4 10 10 N 1.31414 * 119.99347 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00310 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47201 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47346 * 119.99877 * 11 9 7 14 14 H 1.48506 * 109.46753 * 239.99977 * 11 9 7 15 15 C 1.46903 * 110.99672 * 123.95011 * 2 1 3 16 16 H 1.08998 * 110.89128 * 295.34357 * 15 2 1 17 17 C 1.55153 * 111.00109 * 171.46288 * 15 2 1 18 18 C 1.54372 * 102.92287 * 206.45555 * 17 15 2 19 19 N 1.47020 * 107.28667 * 22.13691 * 18 17 15 20 20 C 1.34781 * 125.65124 * 181.12745 * 19 18 17 21 21 O 1.21280 * 120.00199 * 179.97438 * 20 19 18 22 22 C 1.50696 * 119.99443 * 359.96421 * 20 19 18 23 23 C 1.50704 * 109.46822 * 180.02562 * 22 20 19 24 24 C 1.34661 * 126.59330 * 85.02102 * 23 22 20 25 25 N 1.34132 * 108.02283 * 179.97438 * 24 23 22 26 26 C 1.30499 * 109.25437 * 0.02562 * 25 24 23 27 27 N 1.35047 * 108.69700 * 359.76840 * 26 25 24 28 28 H 0.96996 * 126.39155 * 180.27249 * 27 26 25 29 29 C 1.47429 * 108.70391 * 1.09692 * 19 18 17 30 30 H 1.08995 * 109.47123 * 59.99865 * 1 2 3 31 31 H 1.08995 * 109.47210 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46831 * 300.00580 * 1 2 3 33 33 H 1.08998 * 109.47322 * 173.95253 * 3 2 1 34 34 H 1.09002 * 109.47668 * 53.95450 * 3 2 1 35 35 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 36 36 H 0.97004 * 119.99790 * 179.97438 * 10 9 7 37 37 H 1.09000 * 110.72689 * 324.79009 * 17 15 2 38 38 H 1.09007 * 110.72400 * 88.06563 * 17 15 2 39 39 H 1.08997 * 109.84578 * 262.73231 * 18 17 15 40 40 H 1.08997 * 110.03424 * 141.64873 * 18 17 15 41 41 H 1.09000 * 109.47323 * 299.99728 * 22 20 19 42 42 H 1.09001 * 109.47747 * 59.99676 * 22 20 19 43 43 H 1.08004 * 125.99110 * 359.96720 * 24 23 22 44 44 H 1.07999 * 125.65106 * 179.97438 * 26 25 24 45 45 H 1.08998 * 110.36507 * 217.03354 * 29 19 18 46 46 H 1.08997 * 110.36765 * 94.70894 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0055 1.4452 -2.1411 6 7 2.0190 3.3198 -1.5238 7 6 1.6880 3.9363 -2.7027 8 1 1.1250 3.4007 -3.4527 9 6 2.0768 5.2504 -2.9327 10 7 2.7614 5.9023 -2.0198 11 14 1.6252 6.0906 -4.5387 12 1 0.8582 5.1479 -5.3920 13 1 0.7952 7.2888 -4.2543 14 1 2.8637 6.5031 -5.2468 15 6 1.9954 -0.7659 1.1377 16 1 1.7277 -0.2924 2.0822 17 6 3.5319 -0.9476 1.0225 18 6 3.7858 -2.2496 1.8120 19 7 2.5190 -2.9950 1.8443 20 6 2.3190 -4.1777 2.4589 21 8 1.2269 -4.7039 2.4207 22 6 3.4523 -4.8463 3.1934 23 6 2.9699 -6.1452 3.7861 24 6 2.9080 -7.3377 3.1635 25 7 2.4244 -8.2359 4.0344 26 6 2.1837 -7.6451 5.1728 27 7 2.5148 -6.3406 5.0621 28 1 2.4425 -5.6675 5.7568 29 6 1.5035 -2.2342 1.0936 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 3.0797 1.3444 0.1083 34 1 1.5612 1.9274 0.8309 35 1 2.5243 3.8010 -0.8500 36 1 3.0332 6.8195 -2.1804 37 1 3.8295 -1.0646 -0.0196 38 1 4.0550 -0.1089 1.4821 39 1 4.1014 -2.0108 2.8277 40 1 4.5530 -2.8437 1.3157 41 1 4.2683 -5.0453 2.4987 42 1 3.8052 -4.1917 3.9904 43 1 3.1970 -7.5361 2.1419 44 1 1.7886 -8.1214 6.0580 45 1 0.5301 -2.3228 1.5759 46 1 1.4509 -2.5860 0.0633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192551851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:31 Heat of formation + Delta-G solvation = -21.020967 kcal Electronic energy + Delta-G solvation = -28132.147168 eV Core-core repulsion = 24057.074647 eV Total energy + Delta-G solvation = -4075.072520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.97320 -41.19394 -40.27716 -38.92510 -36.72799 -35.76463 -33.85100 -33.25907 -32.92747 -31.76741 -30.42716 -28.90322 -27.93029 -26.89539 -25.27052 -23.74367 -22.53823 -21.99188 -21.43541 -20.88219 -20.37993 -19.81654 -18.70931 -18.35973 -17.85233 -17.52375 -16.66963 -16.54718 -16.24082 -16.02198 -15.75002 -15.51228 -15.24415 -15.15858 -15.07094 -14.71414 -14.48329 -14.21977 -13.97500 -13.90313 -13.67572 -13.64201 -13.43335 -13.09689 -13.01970 -12.93834 -12.60458 -12.39458 -12.21590 -12.11898 -11.88232 -11.79016 -11.44614 -11.11949 -10.97643 -10.89369 -10.27239 -9.97401 -9.69535 -9.33861 -9.25559 -8.44993 -5.92712 1.01658 1.37293 1.43040 1.56381 1.57474 1.87804 2.08553 2.24503 2.29582 2.33927 2.79655 3.22121 3.31380 3.45589 3.64312 3.69067 3.89412 4.03540 4.04228 4.13322 4.18251 4.33777 4.36525 4.39765 4.52825 4.53663 4.57671 4.58807 4.61191 4.67080 4.71609 4.83357 4.90472 5.04134 5.12661 5.21462 5.24920 5.29144 5.43755 5.77058 5.85169 6.04940 6.19414 6.47688 6.58855 6.63688 7.10111 7.13904 7.16188 7.59892 8.16407 8.72488 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.042714 B = 0.001759 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.358997 B =15915.591436 C =16164.117797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.525 5.525 3 C 0.061 3.939 4 C 0.441 3.559 5 O -0.616 6.616 6 N -0.574 5.574 7 C -0.330 4.330 8 H 0.077 0.923 9 C -0.012 4.012 10 N -0.919 5.919 11 Si 0.990 3.010 12 H -0.276 1.276 13 H -0.272 1.272 14 H -0.271 1.271 15 C 0.072 3.928 16 H 0.069 0.931 17 C -0.125 4.125 18 C 0.101 3.899 19 N -0.616 5.616 20 C 0.523 3.477 21 O -0.585 6.585 22 C -0.048 4.048 23 C -0.008 4.008 24 C -0.042 4.042 25 N -0.543 5.543 26 C 0.189 3.811 27 N -0.554 5.554 28 H 0.434 0.566 29 C 0.120 3.880 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.144 0.856 42 H 0.138 0.862 43 H 0.165 0.835 44 H 0.243 0.757 45 H 0.061 0.939 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.677 -16.537 19.601 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.250 5.250 3 C -0.070 4.070 4 C 0.228 3.772 5 O -0.502 6.502 6 N -0.212 5.212 7 C -0.460 4.460 8 H 0.095 0.905 9 C -0.211 4.211 10 N -0.560 5.560 11 Si 0.814 3.186 12 H -0.200 1.200 13 H -0.198 1.198 14 H -0.196 1.196 15 C -0.037 4.037 16 H 0.086 0.914 17 C -0.163 4.163 18 C -0.021 4.021 19 N -0.350 5.350 20 C 0.313 3.687 21 O -0.464 6.464 22 C -0.089 4.089 23 C -0.125 4.125 24 C -0.190 4.190 25 N -0.262 5.262 26 C -0.095 4.095 27 N -0.158 5.158 28 H 0.275 0.725 29 C -0.004 4.004 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.136 0.864 34 H 0.086 0.914 35 H 0.231 0.769 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.182 0.818 44 H 0.259 0.741 45 H 0.080 0.920 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.796 -18.183 18.437 26.772 hybrid contribution -0.655 2.305 0.295 2.414 sum 6.141 -15.878 18.733 25.313 Atomic orbital electron populations 1.22422 0.87093 1.01947 1.00813 1.61535 1.08483 1.12634 1.42312 1.21733 1.02581 0.88837 0.93865 1.20807 0.83641 0.82241 0.90464 1.90478 1.45162 1.65393 1.49150 1.41913 1.50038 1.11550 1.17678 1.19663 1.34220 0.96216 0.95905 0.90497 1.25966 0.96379 0.96627 1.02157 1.69668 1.38271 1.12562 1.35535 0.84917 0.78230 0.77869 0.77604 1.20025 1.19753 1.19616 1.22807 0.96730 0.92177 0.91989 0.91359 1.22800 0.93270 0.98208 1.02056 1.22365 0.85091 0.91965 1.02639 1.48518 1.13516 1.20474 1.52457 1.20860 0.89993 0.79270 0.78545 1.90748 1.28570 1.64401 1.62724 1.20086 0.96051 0.91213 1.01511 1.20705 1.07930 0.97324 0.86570 1.22256 1.06613 0.89830 1.00286 1.70223 1.19092 1.34719 1.02211 1.25647 1.02757 0.81314 0.99781 1.43193 1.48955 1.11723 1.11962 0.72513 1.21995 0.91968 0.90301 0.96149 0.92260 0.91013 0.95190 0.86375 0.91419 0.76949 0.91372 0.90439 0.87471 0.87771 0.88575 0.83843 0.84399 0.81785 0.74099 0.92044 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.01 127.69 1.15 1.95 16 2 N -0.52 -15.64 4.40 -893.45 -3.93 -19.57 16 3 C 0.06 1.91 5.34 85.56 0.46 2.37 16 4 C 0.44 20.11 7.51 87.66 0.66 20.76 16 5 O -0.62 -33.19 13.89 -3.07 -0.04 -33.23 16 6 N -0.57 -28.40 5.29 -306.98 -1.62 -30.03 16 7 C -0.33 -18.39 9.68 84.04 0.81 -17.57 16 8 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 9 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 10 N -0.92 -48.33 13.05 21.67 0.28 -48.05 16 11 Si 0.99 42.37 29.55 68.60 2.03 44.40 16 12 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 14 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 15 C 0.07 1.49 2.71 46.31 0.13 1.62 16 16 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 17 C -0.13 -1.81 5.47 31.80 0.17 -1.64 16 18 C 0.10 0.94 6.49 86.75 0.56 1.51 16 19 N -0.62 -10.58 3.33 -811.70 -2.70 -13.28 16 20 C 0.52 10.13 7.84 87.66 0.69 10.82 16 21 O -0.58 -17.75 16.29 -3.03 -0.05 -17.80 16 22 C -0.05 -0.47 5.45 29.10 0.16 -0.32 16 23 C -0.01 -0.14 5.73 40.95 0.23 0.10 16 24 C -0.04 -0.92 11.79 83.52 0.98 0.06 16 25 N -0.54 -12.69 11.25 -200.31 -2.25 -14.94 16 26 C 0.19 2.81 13.04 180.26 2.35 5.16 16 27 N -0.55 -6.62 6.15 -186.49 -1.15 -7.77 16 28 H 0.43 2.02 8.96 -92.71 -0.83 1.19 16 29 C 0.12 2.72 5.21 86.85 0.45 3.17 16 30 H 0.06 2.37 5.88 -2.39 -0.01 2.36 16 31 H 0.07 2.06 6.86 -2.39 -0.02 2.05 16 32 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.12 3.06 6.86 -2.39 -0.02 3.04 16 34 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16 35 H 0.40 18.43 7.90 -92.71 -0.73 17.70 16 36 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.11 1.10 7.89 -2.38 -0.02 1.09 16 39 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 44 H 0.24 1.37 8.06 -2.91 -0.02 1.35 16 45 H 0.06 1.56 7.82 -2.39 -0.02 1.54 16 46 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -83.98 382.30 -0.70 -84.68 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -0.54 Total: 27.73 kcal Atomic # 6 Polarization: 18.57 SS G_CDS: 9.28 Total: 27.85 kcal Atomic # 7 Polarization: -122.26 SS G_CDS: -11.37 Total: -133.63 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -0.09 Total: -51.03 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -83.98 -0.70 -84.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192551851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.661 kcal (2) G-P(sol) polarization free energy of solvation -83.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds