Wall clock time and date at job start Tue Mar 31 2020 18:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 O 1.21297 * 120.00140 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00393 * 180.02562 * 4 3 2 7 7 C 1.37096 * 120.00184 * 179.97438 * 6 4 3 8 8 H 1.08000 * 120.00243 * 359.97438 * 7 6 4 9 9 C 1.38951 * 119.99747 * 180.02562 * 7 6 4 10 10 N 1.31411 * 120.00149 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99786 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47241 * 89.99996 * 11 9 7 13 13 H 1.48504 * 109.47008 * 210.00154 * 11 9 7 14 14 H 1.48502 * 109.46900 * 329.99794 * 11 9 7 15 15 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 16 16 H 1.08997 * 110.88431 * 295.35151 * 15 2 1 17 17 C 1.55158 * 111.00649 * 171.46373 * 15 2 1 18 18 C 1.54370 * 102.91943 * 206.45445 * 17 15 2 19 19 N 1.47020 * 107.28864 * 22.14311 * 18 17 15 20 20 C 1.34781 * 125.64715 * 181.05655 * 19 18 17 21 21 O 1.21280 * 120.00047 * 180.02562 * 20 19 18 22 22 C 1.50695 * 119.99887 * 0.03818 * 20 19 18 23 23 C 1.50706 * 109.46954 * 180.02562 * 22 20 19 24 24 N 1.30492 * 125.65226 * 305.02320 * 23 22 20 25 25 C 1.34130 * 109.25884 * 180.02562 * 24 23 22 26 26 C 1.34666 * 108.01886 * 359.97438 * 25 24 23 27 27 N 1.35040 * 125.64753 * 124.71712 * 23 22 20 28 28 H 0.97000 * 126.39903 * 0.02562 * 27 23 22 29 29 C 1.47421 * 108.70483 * 1.08895 * 19 18 17 30 30 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 31 31 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 32 32 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 34 34 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 35 35 H 0.96996 * 119.99654 * 0.02562 * 6 4 3 36 36 H 0.97004 * 119.99438 * 179.97438 * 10 9 7 37 37 H 1.08998 * 110.71810 * 324.79136 * 17 15 2 38 38 H 1.09000 * 110.71600 * 88.06480 * 17 15 2 39 39 H 1.08995 * 109.84552 * 262.73312 * 18 17 15 40 40 H 1.08998 * 110.02822 * 141.64796 * 18 17 15 41 41 H 1.08998 * 109.46992 * 299.99767 * 22 20 19 42 42 H 1.09002 * 109.47320 * 60.00412 * 22 20 19 43 43 H 1.08000 * 125.98699 * 180.02562 * 25 24 23 44 44 H 1.08001 * 126.58868 * 180.02562 * 26 25 24 45 45 H 1.09002 * 110.36886 * 217.03744 * 29 19 18 46 46 H 1.08995 * 110.36943 * 94.71251 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0046 1.4457 -2.1408 6 7 2.0188 3.3200 -1.5237 7 6 1.6930 3.9345 -2.7051 8 1 1.1307 3.3986 -3.4555 9 6 2.0872 5.2465 -2.9375 10 7 2.7719 5.8984 -2.0247 11 14 1.6428 6.0841 -4.5470 12 1 0.3310 6.7656 -4.4047 13 1 2.6858 7.0843 -4.8890 14 1 1.5582 5.0681 -5.6268 15 6 1.9956 -0.7659 1.1375 16 1 1.7278 -0.2924 2.0821 17 6 3.5322 -0.9475 1.0223 18 6 3.7860 -2.2495 1.8118 19 7 2.5193 -2.9950 1.8440 20 6 2.3197 -4.1784 2.4574 21 8 1.2279 -4.7052 2.4184 22 6 3.4530 -4.8469 3.1920 23 6 2.9711 -6.1467 3.7832 24 7 1.9467 -6.2866 4.5794 25 6 1.8144 -7.5806 4.9069 26 6 2.7937 -8.2687 4.2897 27 7 3.5243 -7.3604 3.5721 28 1 4.2969 -7.5523 3.0179 29 6 1.5038 -2.2343 1.0934 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.5611 1.9274 0.8309 34 1 3.0797 1.3445 0.1082 35 1 2.5247 3.8009 -0.8502 36 1 3.0473 6.8141 -2.1872 37 1 3.8295 -1.0645 -0.0198 38 1 4.0551 -0.1088 1.4819 39 1 4.1016 -2.0108 2.8274 40 1 4.5532 -2.8436 1.3153 41 1 4.2695 -5.0448 2.4975 42 1 3.8049 -4.1929 3.9898 43 1 1.0550 -7.9975 5.5518 44 1 2.9665 -9.3333 4.3463 45 1 0.5303 -2.3229 1.5756 46 1 1.4511 -2.5859 0.0631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193048372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:37 Heat of formation + Delta-G solvation = 10.761753 kcal Electronic energy + Delta-G solvation = -28133.085836 eV Core-core repulsion = 24059.391517 eV Total energy + Delta-G solvation = -4073.694318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.33165 -40.23577 -38.73064 -37.62908 -35.46269 -33.84003 -32.79962 -32.48952 -31.25997 -30.89038 -29.34506 -27.79046 -27.28703 -25.26946 -23.91100 -22.81564 -21.87244 -21.21130 -20.27904 -19.57764 -19.09111 -18.15047 -17.85702 -17.44302 -16.79621 -15.95811 -15.71882 -15.46552 -14.84367 -14.69251 -14.54646 -14.35408 -14.20958 -14.04734 -13.83603 -13.60420 -13.53691 -13.28873 -12.99360 -12.85185 -12.78434 -12.29670 -12.19594 -11.89838 -11.51720 -11.42474 -11.14967 -11.02430 -10.93465 -10.79075 -10.39562 -10.28539 -10.22503 -10.20457 -10.02309 -9.48578 -8.81351 -8.70943 -8.48340 -7.99805 -7.89150 -6.42651 -3.83306 1.69019 2.44865 2.51892 2.86359 3.04792 3.17241 3.26123 3.31939 3.89439 3.93446 3.95216 4.19960 4.22637 4.45947 4.51521 4.63495 4.79904 4.85210 4.95679 5.05488 5.11902 5.15153 5.18491 5.27706 5.33628 5.37958 5.60836 5.66886 5.72010 5.76776 5.79296 5.86384 5.88303 5.95246 6.05645 6.12011 6.27307 6.46758 6.56543 6.99428 7.18618 7.32542 7.34595 7.54597 7.85806 8.00561 8.05649 8.61045 9.17567 9.53594 10.05531 10.75044 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.042828 B = 0.001763 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.628543 B =15876.754659 C =16151.881262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.507 5.507 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.577 6.577 6 N -0.564 5.564 7 C -0.299 4.299 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.929 3.071 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.068 3.932 16 H 0.056 0.944 17 C -0.127 4.127 18 C 0.101 3.899 19 N -0.620 5.620 20 C 0.533 3.467 21 O -0.514 6.514 22 C -0.049 4.049 23 C 0.216 3.784 24 N -0.460 5.460 25 C -0.026 4.026 26 C -0.056 4.056 27 N -0.566 5.566 28 H 0.417 0.583 29 C 0.119 3.881 30 H 0.099 0.901 31 H 0.017 0.983 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.170 0.830 44 H 0.177 0.823 45 H 0.077 0.923 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.799 -21.562 14.058 26.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.231 5.231 3 C -0.085 4.085 4 C 0.229 3.771 5 O -0.461 6.461 6 N -0.201 5.201 7 C -0.428 4.428 8 H 0.121 0.879 9 C -0.179 4.179 10 N -0.543 5.543 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.042 4.042 16 H 0.073 0.927 17 C -0.165 4.165 18 C -0.023 4.023 19 N -0.356 5.356 20 C 0.319 3.681 21 O -0.388 6.388 22 C -0.091 4.091 23 C -0.048 4.048 24 N -0.179 5.179 25 C -0.175 4.175 26 C -0.190 4.190 27 N -0.170 5.170 28 H 0.255 0.745 29 C -0.004 4.004 30 H 0.117 0.883 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.137 0.863 43 H 0.187 0.813 44 H 0.194 0.806 45 H 0.096 0.904 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.431 -21.743 13.374 26.324 hybrid contribution 0.875 0.434 -0.092 0.981 sum 7.306 -21.309 13.282 26.151 Atomic orbital electron populations 1.22598 0.86317 1.01752 1.02239 1.61632 1.08880 1.12938 1.39665 1.21878 1.00786 0.88599 0.97275 1.19706 0.85500 0.82948 0.88899 1.90491 1.43837 1.64639 1.47113 1.41857 1.49425 1.10763 1.18052 1.19697 1.32909 0.95479 0.94723 0.87904 1.25251 0.96804 0.96646 0.99215 1.69611 1.38051 1.12236 1.34439 0.85866 0.78016 0.78905 0.81549 1.20443 1.20951 1.19421 1.22787 0.94859 0.93416 0.93117 0.92655 1.22749 0.95557 0.96076 1.02102 1.22112 0.86277 0.93189 1.00696 1.48389 1.12899 1.20615 1.53723 1.19710 0.89525 0.79885 0.78965 1.90792 1.25580 1.62989 1.59401 1.19881 0.97478 0.91196 1.00506 1.22331 0.94512 0.86910 1.01049 1.70253 1.14773 1.19283 1.13598 1.22406 1.00857 0.89673 1.04563 1.22746 0.97911 0.96307 1.02029 1.43218 1.27139 1.07622 1.39028 0.74501 1.22191 0.91741 0.89465 0.96976 0.88256 0.96494 0.91979 0.93385 0.89263 0.77521 0.91900 0.88881 0.89770 0.91198 0.91084 0.87534 0.86273 0.81309 0.80553 0.90443 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.01 60.07 0.54 0.84 16 2 N -0.51 -7.98 4.40 -233.74 -1.03 -9.01 16 3 C 0.05 0.77 5.34 -4.97 -0.03 0.75 16 4 C 0.44 10.13 7.51 -10.99 -0.08 10.05 16 5 O -0.58 -15.12 13.88 5.54 0.08 -15.04 16 6 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 7 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -24.13 13.05 55.50 0.72 -23.40 16 11 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 C 0.07 0.82 2.71 -65.56 -0.18 0.64 16 16 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 17 C -0.13 -1.20 5.47 -24.87 -0.14 -1.33 16 18 C 0.10 0.75 6.49 -3.04 -0.02 0.73 16 19 N -0.62 -6.61 3.33 -170.50 -0.57 -7.18 16 20 C 0.53 6.35 7.84 -10.99 -0.09 6.26 16 21 O -0.51 -8.58 15.81 5.56 0.09 -8.49 16 22 C -0.05 -0.38 5.52 -29.03 -0.16 -0.54 16 23 C 0.22 2.21 6.96 -155.42 -1.08 1.12 16 24 N -0.46 -6.09 10.58 -10.82 -0.11 -6.21 16 25 C -0.03 -0.27 11.87 -17.81 -0.21 -0.48 16 26 C -0.06 -0.41 12.04 -16.56 -0.20 -0.61 16 27 N -0.57 -3.99 6.15 -10.23 -0.06 -4.05 16 28 H 0.42 1.39 8.96 -40.82 -0.37 1.02 16 29 C 0.12 1.48 5.20 -2.53 -0.01 1.47 16 30 H 0.10 1.94 5.88 -51.93 -0.31 1.63 16 31 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.89 6.87 -51.93 -0.36 0.54 16 33 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 34 H 0.09 1.32 6.86 -51.93 -0.36 0.96 16 35 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 36 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.68 7.89 -51.93 -0.41 0.27 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.08 1.05 7.82 -51.93 -0.41 0.64 16 46 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -37.11 381.51 -8.79 -45.90 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.68 Total: 8.87 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -1.89 Total: 11.07 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -1.11 Total: -63.83 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.16 Total: -23.54 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.11 -8.79 -45.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193048372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.660 kcal (2) G-P(sol) polarization free energy of solvation -37.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds