Wall clock time and date at job start Tue Mar 31 2020 18:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 O 1.21297 * 120.00140 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00393 * 180.02562 * 4 3 2 7 7 C 1.37096 * 120.00184 * 179.97438 * 6 4 3 8 8 H 1.08000 * 120.00243 * 359.97438 * 7 6 4 9 9 C 1.38951 * 119.99747 * 180.02562 * 7 6 4 10 10 N 1.31411 * 120.00149 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99786 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47241 * 89.99996 * 11 9 7 13 13 H 1.48504 * 109.47008 * 210.00154 * 11 9 7 14 14 H 1.48502 * 109.46900 * 329.99794 * 11 9 7 15 15 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 16 16 H 1.08997 * 110.88431 * 295.35151 * 15 2 1 17 17 C 1.55158 * 111.00649 * 171.46373 * 15 2 1 18 18 C 1.54370 * 102.91943 * 206.45445 * 17 15 2 19 19 N 1.47020 * 107.28864 * 22.14311 * 18 17 15 20 20 C 1.34781 * 125.64715 * 181.05655 * 19 18 17 21 21 O 1.21280 * 120.00047 * 180.02562 * 20 19 18 22 22 C 1.50695 * 119.99887 * 0.03818 * 20 19 18 23 23 C 1.50706 * 109.46954 * 180.02562 * 22 20 19 24 24 N 1.30492 * 125.65226 * 305.02320 * 23 22 20 25 25 C 1.34130 * 109.25884 * 180.02562 * 24 23 22 26 26 C 1.34666 * 108.01886 * 359.97438 * 25 24 23 27 27 N 1.35040 * 125.64753 * 124.71712 * 23 22 20 28 28 H 0.97000 * 126.39903 * 0.02562 * 27 23 22 29 29 C 1.47421 * 108.70483 * 1.08895 * 19 18 17 30 30 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 31 31 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 32 32 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 34 34 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 35 35 H 0.96996 * 119.99654 * 0.02562 * 6 4 3 36 36 H 0.97004 * 119.99438 * 179.97438 * 10 9 7 37 37 H 1.08998 * 110.71810 * 324.79136 * 17 15 2 38 38 H 1.09000 * 110.71600 * 88.06480 * 17 15 2 39 39 H 1.08995 * 109.84552 * 262.73312 * 18 17 15 40 40 H 1.08998 * 110.02822 * 141.64796 * 18 17 15 41 41 H 1.08998 * 109.46992 * 299.99767 * 22 20 19 42 42 H 1.09002 * 109.47320 * 60.00412 * 22 20 19 43 43 H 1.08000 * 125.98699 * 180.02562 * 25 24 23 44 44 H 1.08001 * 126.58868 * 180.02562 * 26 25 24 45 45 H 1.09002 * 110.36886 * 217.03744 * 29 19 18 46 46 H 1.08995 * 110.36943 * 94.71251 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0046 1.4457 -2.1408 6 7 2.0188 3.3200 -1.5237 7 6 1.6930 3.9345 -2.7051 8 1 1.1307 3.3986 -3.4555 9 6 2.0872 5.2465 -2.9375 10 7 2.7719 5.8984 -2.0247 11 14 1.6428 6.0841 -4.5470 12 1 0.3310 6.7656 -4.4047 13 1 2.6858 7.0843 -4.8890 14 1 1.5582 5.0681 -5.6268 15 6 1.9956 -0.7659 1.1375 16 1 1.7278 -0.2924 2.0821 17 6 3.5322 -0.9475 1.0223 18 6 3.7860 -2.2495 1.8118 19 7 2.5193 -2.9950 1.8440 20 6 2.3197 -4.1784 2.4574 21 8 1.2279 -4.7052 2.4184 22 6 3.4530 -4.8469 3.1920 23 6 2.9711 -6.1467 3.7832 24 7 1.9467 -6.2866 4.5794 25 6 1.8144 -7.5806 4.9069 26 6 2.7937 -8.2687 4.2897 27 7 3.5243 -7.3604 3.5721 28 1 4.2969 -7.5523 3.0179 29 6 1.5038 -2.2343 1.0934 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.5611 1.9274 0.8309 34 1 3.0797 1.3445 0.1082 35 1 2.5247 3.8009 -0.8502 36 1 3.0473 6.8141 -2.1872 37 1 3.8295 -1.0645 -0.0198 38 1 4.0551 -0.1088 1.4819 39 1 4.1016 -2.0108 2.8274 40 1 4.5532 -2.8436 1.3153 41 1 4.2695 -5.0448 2.4975 42 1 3.8049 -4.1929 3.9898 43 1 1.0550 -7.9975 5.5518 44 1 2.9665 -9.3333 4.3463 45 1 0.5303 -2.3229 1.5756 46 1 1.4511 -2.5859 0.0631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193048372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:37 Heat of formation + Delta-G solvation = -18.829161 kcal Electronic energy + Delta-G solvation = -28134.368994 eV Core-core repulsion = 24059.391517 eV Total energy + Delta-G solvation = -4074.977477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.95802 -41.16454 -40.25749 -38.88951 -36.70585 -35.75303 -33.46963 -33.26191 -33.18413 -31.73417 -30.40988 -28.93187 -28.13692 -26.91348 -25.30423 -23.73918 -22.49400 -21.95724 -21.36080 -20.86864 -20.26092 -19.80172 -18.77119 -18.30478 -17.85906 -17.48176 -16.65817 -16.50154 -16.27561 -16.04837 -15.86476 -15.34501 -15.23377 -15.15345 -14.86256 -14.77205 -14.61873 -14.20724 -13.89503 -13.86429 -13.66714 -13.59006 -13.41992 -13.09637 -13.00929 -12.92625 -12.59391 -12.39896 -12.19900 -12.11613 -11.86457 -11.77427 -11.43419 -11.00960 -10.97524 -10.86184 -10.26320 -9.96813 -9.65881 -9.33687 -9.25109 -8.43973 -5.91878 1.07903 1.39271 1.43305 1.55393 1.62324 1.77911 2.09333 2.25907 2.29480 2.37669 2.80864 3.23028 3.28649 3.40957 3.48904 3.70317 3.91629 4.02813 4.08792 4.19588 4.34246 4.36173 4.41298 4.42596 4.44599 4.54722 4.57119 4.58744 4.63480 4.72938 4.78995 4.84375 4.91172 5.06359 5.13494 5.15503 5.23960 5.30599 5.44170 5.83708 5.86055 6.05518 6.19763 6.47516 6.59359 6.64520 7.16078 7.16769 7.22459 7.60603 8.17087 8.73279 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.042828 B = 0.001763 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.628543 B =15876.754659 C =16151.881262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.523 5.523 3 C 0.060 3.940 4 C 0.441 3.559 5 O -0.616 6.616 6 N -0.574 5.574 7 C -0.331 4.331 8 H 0.077 0.923 9 C -0.011 4.011 10 N -0.919 5.919 11 Si 0.990 3.010 12 H -0.273 1.273 13 H -0.270 1.270 14 H -0.274 1.274 15 C 0.071 3.929 16 H 0.066 0.934 17 C -0.124 4.124 18 C 0.101 3.899 19 N -0.618 5.618 20 C 0.526 3.474 21 O -0.574 6.574 22 C -0.039 4.039 23 C 0.198 3.802 24 N -0.517 5.517 25 C -0.071 4.071 26 C -0.034 4.034 27 N -0.553 5.553 28 H 0.436 0.564 29 C 0.121 3.879 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.150 0.850 42 H 0.143 0.857 43 H 0.175 0.825 44 H 0.216 0.784 45 H 0.058 0.942 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.770 -22.148 15.055 28.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.248 5.248 3 C -0.071 4.071 4 C 0.229 3.771 5 O -0.502 6.502 6 N -0.212 5.212 7 C -0.461 4.461 8 H 0.095 0.905 9 C -0.211 4.211 10 N -0.560 5.560 11 Si 0.814 3.186 12 H -0.199 1.199 13 H -0.195 1.195 14 H -0.199 1.199 15 C -0.038 4.038 16 H 0.084 0.916 17 C -0.162 4.162 18 C -0.021 4.021 19 N -0.352 5.352 20 C 0.315 3.685 21 O -0.453 6.453 22 C -0.080 4.080 23 C -0.067 4.067 24 N -0.237 5.237 25 C -0.218 4.218 26 C -0.169 4.169 27 N -0.158 5.158 28 H 0.278 0.722 29 C -0.002 4.002 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.230 0.770 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.168 0.832 42 H 0.161 0.839 43 H 0.192 0.808 44 H 0.233 0.767 45 H 0.076 0.924 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.470 -22.317 14.387 28.190 hybrid contribution -0.087 0.528 -0.393 0.664 sum 9.384 -21.789 13.993 27.543 Atomic orbital electron populations 1.22428 0.87150 1.01946 1.00791 1.61551 1.08436 1.12602 1.42193 1.21739 1.02607 0.88842 0.93885 1.20784 0.83679 0.82221 0.90423 1.90475 1.45122 1.65412 1.49156 1.41908 1.50094 1.11569 1.17583 1.19632 1.34324 0.96419 0.95723 0.90461 1.25971 0.96326 0.96619 1.02210 1.69664 1.38111 1.12626 1.35620 0.84972 0.78169 0.77814 0.77642 1.19876 1.19523 1.19925 1.22812 0.96886 0.92187 0.91939 0.91639 1.22792 0.93103 0.98179 1.02104 1.22377 0.85110 0.92067 1.02555 1.48471 1.13602 1.20402 1.52761 1.20523 0.89888 0.79677 0.78394 1.90768 1.28242 1.64586 1.61672 1.20008 0.96439 0.90154 1.01431 1.22698 0.94429 0.88568 1.01009 1.70155 1.16820 1.21120 1.15591 1.22760 1.02845 0.89629 1.06575 1.23293 0.96110 0.97716 0.99797 1.43189 1.27360 1.06645 1.38631 0.72231 1.21971 0.91903 0.90289 0.96067 0.92138 0.95315 0.91043 0.91534 0.86316 0.76959 0.91370 0.90170 0.87523 0.88112 0.88169 0.83221 0.83937 0.80803 0.76710 0.92390 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.82 9.01 127.69 1.15 1.97 16 2 N -0.52 -16.17 4.40 -893.41 -3.93 -20.10 16 3 C 0.06 1.95 5.34 85.55 0.46 2.41 16 4 C 0.44 20.40 7.51 87.66 0.66 21.06 16 5 O -0.62 -33.46 13.88 -3.08 -0.04 -33.50 16 6 N -0.57 -28.70 5.29 -306.99 -1.62 -30.33 16 7 C -0.33 -18.57 9.68 84.04 0.81 -17.75 16 8 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 9 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 10 N -0.92 -48.70 13.05 21.66 0.28 -48.42 16 11 Si 0.99 42.60 29.55 68.60 2.03 44.63 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 13 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 C 0.07 1.59 2.71 46.31 0.13 1.71 16 16 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 17 C -0.12 -1.92 5.47 31.80 0.17 -1.75 16 18 C 0.10 1.07 6.49 86.75 0.56 1.63 16 19 N -0.62 -11.97 3.33 -811.72 -2.70 -14.67 16 20 C 0.53 11.91 7.84 87.65 0.69 12.59 16 21 O -0.57 -19.73 15.81 -3.03 -0.05 -19.78 16 22 C -0.04 -0.49 5.52 29.10 0.16 -0.33 16 23 C 0.20 3.73 6.96 138.13 0.96 4.69 16 24 N -0.52 -13.78 10.58 -188.13 -1.99 -15.77 16 25 C -0.07 -1.45 11.87 83.52 0.99 -0.46 16 26 C -0.03 -0.43 12.04 83.08 1.00 0.57 16 27 N -0.55 -6.39 6.15 -186.27 -1.15 -7.53 16 28 H 0.44 1.36 8.96 -92.71 -0.83 0.53 16 29 C 0.12 3.00 5.20 86.86 0.45 3.45 16 30 H 0.06 2.48 5.88 -2.39 -0.01 2.46 16 31 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 2.16 6.87 -2.38 -0.02 2.14 16 33 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 34 H 0.12 3.17 6.86 -2.39 -0.02 3.16 16 35 H 0.40 18.68 7.90 -92.71 -0.73 17.94 16 36 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.11 1.22 7.89 -2.39 -0.02 1.20 16 39 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 44 H 0.22 0.81 8.06 -2.91 -0.02 0.79 16 45 H 0.06 1.64 7.82 -2.39 -0.02 1.62 16 46 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -86.69 381.51 -1.05 -87.74 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: -0.54 Total: 28.08 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: 8.66 Total: 29.66 kcal Atomic # 7 Polarization: -125.72 SS G_CDS: -11.11 Total: -136.83 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -0.09 Total: -53.28 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -86.69 -1.05 -87.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193048372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.908 kcal (2) G-P(sol) polarization free energy of solvation -86.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds