Wall clock time and date at job start Tue Mar 31 2020 18:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00117 * 2 1 4 4 C 1.50700 * 109.47224 * 293.95395 * 3 2 1 5 5 O 1.21293 * 119.99753 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00120 * 179.97438 * 4 3 2 7 7 C 1.37097 * 119.99930 * 180.27456 * 6 4 3 8 8 H 1.07997 * 119.99801 * 359.73138 * 7 6 4 9 9 C 1.38946 * 119.99966 * 179.72791 * 7 6 4 10 10 N 1.31413 * 120.00056 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00244 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46859 * 89.99859 * 11 9 7 13 13 H 1.48494 * 109.47383 * 210.00023 * 11 9 7 14 14 H 1.48499 * 109.47044 * 330.00376 * 11 9 7 15 15 C 1.46902 * 110.99832 * 123.95582 * 2 1 3 16 16 H 1.08999 * 110.88795 * 297.25534 * 15 2 1 17 17 C 1.55159 * 111.00730 * 61.14170 * 15 2 1 18 18 C 1.54370 * 102.92191 * 153.54215 * 17 15 2 19 19 N 1.47012 * 107.28826 * 337.86423 * 18 17 15 20 20 C 1.34780 * 125.65116 * 178.87020 * 19 18 17 21 21 O 1.21277 * 120.00472 * 180.02562 * 20 19 18 22 22 C 1.50705 * 119.99442 * 0.03955 * 20 19 18 23 23 C 1.50698 * 109.47040 * 180.02562 * 22 20 19 24 24 N 1.30497 * 125.65070 * 305.02449 * 23 22 20 25 25 C 1.34127 * 109.25790 * 179.97438 * 24 23 22 26 26 C 1.34668 * 108.02089 * 0.02562 * 25 24 23 27 27 N 1.35044 * 125.65257 * 124.71688 * 23 22 20 28 28 H 0.96997 * 126.39416 * 0.02562 * 27 23 22 29 29 C 1.47426 * 108.70735 * 358.90613 * 19 18 17 30 30 H 1.08998 * 109.47130 * 66.03943 * 1 2 3 31 31 H 1.09005 * 109.46955 * 186.04133 * 1 2 3 32 32 H 1.09004 * 109.46843 * 306.03710 * 1 2 3 33 33 H 1.09005 * 109.47245 * 173.95390 * 3 2 1 34 34 H 1.09002 * 109.47200 * 53.95566 * 3 2 1 35 35 H 0.97000 * 119.99579 * 0.02562 * 6 4 3 36 36 H 0.96998 * 120.00037 * 179.97438 * 10 9 7 37 37 H 1.09000 * 110.71753 * 271.94293 * 17 15 2 38 38 H 1.09008 * 110.71809 * 35.21317 * 17 15 2 39 39 H 1.09000 * 109.90267 * 218.42164 * 18 17 15 40 40 H 1.09000 * 109.97123 * 97.34273 * 18 17 15 41 41 H 1.09000 * 109.46973 * 299.99867 * 22 20 19 42 42 H 1.09002 * 109.47169 * 60.00419 * 22 20 19 43 43 H 1.08007 * 125.98857 * 180.02562 * 25 24 23 44 44 H 1.08000 * 126.58930 * 180.02562 * 26 25 24 45 45 H 1.08999 * 110.36690 * 265.29204 * 29 19 18 46 46 H 1.08998 * 110.46101 * 143.01783 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 8 1.0047 1.4456 -2.1407 6 7 2.0181 3.3202 -1.5233 7 6 1.6871 3.9367 -2.7022 8 1 1.1247 3.4008 -3.4525 9 6 2.0751 5.2510 -2.9317 10 7 2.7598 5.9029 -2.0189 11 14 1.6235 6.0914 -4.5377 12 1 0.3092 6.7668 -4.3904 13 1 2.6613 7.0971 -4.8790 14 1 1.5408 5.0783 -5.6203 15 6 1.9954 -0.7660 1.1376 16 1 1.6993 -0.3111 2.0828 17 6 1.5421 -2.2483 1.0675 18 6 2.6575 -2.9872 1.8375 19 7 3.8488 -2.1261 1.8139 20 6 5.0315 -2.4051 2.3970 21 8 5.9498 -1.6175 2.3132 22 6 5.2127 -3.6961 3.1531 23 6 6.6137 -3.7632 3.7040 24 7 7.7112 -3.6428 3.0083 25 6 8.7681 -3.7546 3.8264 26 6 8.3082 -3.9523 5.0766 27 7 6.9416 -3.9521 5.0004 28 1 6.3239 -4.0685 5.7392 29 6 3.5355 -0.9063 1.0474 30 1 -0.3633 0.4173 -0.9391 31 1 -0.3633 -1.0220 0.1082 32 1 -0.3633 0.6046 0.8311 33 1 3.0798 1.3444 0.1082 34 1 1.5612 1.9273 0.8309 35 1 2.5234 3.8013 -0.8495 36 1 3.0310 6.8203 -2.1793 37 1 0.5791 -2.3807 1.5608 38 1 1.4969 -2.5892 0.0331 39 1 2.8773 -3.9375 1.3510 40 1 2.3464 -3.1614 2.8675 41 1 4.4973 -3.7397 3.9743 42 1 5.0457 -4.5376 2.4806 43 1 9.8062 -3.6962 3.5338 44 1 8.9033 -4.0811 5.9686 45 1 3.8458 -1.0207 0.0088 46 1 4.0223 -0.0397 1.4947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193048373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:40 Heat of formation + Delta-G solvation = 11.731662 kcal Electronic energy + Delta-G solvation = -28304.662071 eV Core-core repulsion = 24231.009811 eV Total energy + Delta-G solvation = -4073.652260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.29585 -40.21536 -38.69700 -37.61072 -35.45239 -33.80402 -32.76749 -32.45922 -31.25072 -30.86781 -29.20617 -27.84441 -27.47273 -24.92346 -23.99356 -22.94685 -21.83520 -21.14193 -20.27543 -19.57586 -19.04301 -18.11404 -17.81654 -17.39386 -16.79481 -15.90375 -15.85361 -15.13958 -14.93510 -14.65146 -14.61271 -14.45626 -14.09916 -14.02597 -13.85707 -13.65463 -13.38847 -13.24146 -13.12143 -12.81256 -12.74048 -12.28262 -12.08925 -11.82095 -11.49071 -11.38191 -11.27470 -11.06539 -10.95952 -10.75787 -10.36539 -10.24687 -10.18979 -10.15635 -9.97339 -9.45440 -8.77624 -8.67125 -8.47942 -7.96724 -7.86753 -6.38594 -3.79460 1.72239 2.48822 2.55274 2.89630 3.08265 3.20012 3.28736 3.34710 3.91667 3.94826 3.98229 4.20471 4.25336 4.46424 4.49780 4.66243 4.79199 4.86758 4.95496 5.06569 5.13608 5.17228 5.19206 5.28792 5.32543 5.41809 5.59660 5.63685 5.72919 5.78099 5.80485 5.88434 5.90217 5.93272 6.06557 6.12968 6.30197 6.50794 6.54193 7.02624 7.19228 7.31324 7.37996 7.58148 7.90107 8.05092 8.09108 8.64636 9.20990 9.57428 10.09023 10.79143 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.002131 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.200140 B =13136.210230 C =14468.163804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.506 5.506 3 C 0.042 3.958 4 C 0.445 3.555 5 O -0.578 6.578 6 N -0.564 5.564 7 C -0.298 4.298 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.901 5.901 11 Si 0.930 3.070 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.068 3.932 16 H 0.054 0.946 17 C -0.123 4.123 18 C 0.101 3.899 19 N -0.620 5.620 20 C 0.532 3.468 21 O -0.510 6.510 22 C -0.048 4.048 23 C 0.215 3.785 24 N -0.459 5.459 25 C -0.025 4.025 26 C -0.057 4.057 27 N -0.567 5.567 28 H 0.417 0.583 29 C 0.115 3.885 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.016 0.984 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.170 0.830 44 H 0.177 0.823 45 H 0.084 0.916 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.483 -21.616 18.577 28.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.231 5.231 3 C -0.089 4.089 4 C 0.230 3.770 5 O -0.462 6.462 6 N -0.200 5.200 7 C -0.428 4.428 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.543 5.543 11 Si 0.757 3.243 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.194 1.194 15 C -0.042 4.042 16 H 0.072 0.928 17 C -0.161 4.161 18 C -0.022 4.022 19 N -0.357 5.357 20 C 0.318 3.682 21 O -0.384 6.384 22 C -0.090 4.090 23 C -0.049 4.049 24 N -0.177 5.177 25 C -0.174 4.174 26 C -0.190 4.190 27 N -0.171 5.171 28 H 0.254 0.746 29 C -0.008 4.008 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.123 0.877 42 H 0.137 0.863 43 H 0.187 0.813 44 H 0.194 0.806 45 H 0.102 0.898 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.975 -21.499 16.677 27.371 hybrid contribution -0.399 1.051 1.801 2.123 sum 2.576 -20.448 18.479 27.681 Atomic orbital electron populations 1.22556 0.86196 1.00767 1.02928 1.61626 1.08854 1.12951 1.39643 1.21951 1.00889 0.88693 0.97378 1.19666 0.85482 0.82957 0.88851 1.90475 1.43994 1.64642 1.47117 1.41864 1.49285 1.10717 1.18175 1.19688 1.32925 0.95240 0.94916 0.87889 1.25269 0.96835 0.96695 0.99216 1.69615 1.38043 1.12145 1.34469 0.85857 0.77971 0.78908 0.81546 1.20482 1.20939 1.19395 1.22782 0.94041 0.94286 0.93052 0.92831 1.22709 0.97244 0.93984 1.02150 1.22092 0.85266 0.94401 1.00478 1.48368 1.11651 1.21569 1.54064 1.19720 0.81109 0.87865 0.79539 1.90810 1.39073 1.49143 1.59332 1.19874 0.89842 0.98370 1.00884 1.22336 0.96027 1.05901 0.80640 1.70267 0.96984 1.17202 1.33286 1.22420 0.98800 1.06685 0.89492 1.22742 0.82985 1.11977 1.01338 1.43210 1.07909 1.56324 1.09625 0.74580 1.22251 0.94268 0.87130 0.97152 0.88297 0.92109 0.96557 0.89274 0.93347 0.77485 0.91877 0.90047 0.88889 0.90962 0.91483 0.87666 0.86274 0.81274 0.80556 0.89764 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.08 60.07 0.55 0.89 16 2 N -0.51 -7.98 4.40 -233.74 -1.03 -9.01 16 3 C 0.04 0.75 5.33 -4.98 -0.03 0.72 16 4 C 0.45 10.47 7.54 -10.99 -0.08 10.39 16 5 O -0.58 -15.33 13.88 5.55 0.08 -15.25 16 6 N -0.56 -14.41 5.29 -10.97 -0.06 -14.47 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 10 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 11 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 C 0.07 0.82 2.71 -65.56 -0.18 0.64 16 16 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 17 C -0.12 -1.08 5.30 -24.87 -0.13 -1.21 16 18 C 0.10 0.73 6.49 -3.05 -0.02 0.71 16 19 N -0.62 -6.82 3.33 -170.50 -0.57 -7.39 16 20 C 0.53 6.61 7.84 -10.98 -0.09 6.52 16 21 O -0.51 -8.96 15.81 5.56 0.09 -8.88 16 22 C -0.05 -0.38 5.52 -29.03 -0.16 -0.54 16 23 C 0.22 2.28 6.96 -155.42 -1.08 1.20 16 24 N -0.46 -6.37 10.58 -10.82 -0.11 -6.48 16 25 C -0.03 -0.27 11.87 -17.81 -0.21 -0.49 16 26 C -0.06 -0.44 12.04 -16.56 -0.20 -0.64 16 27 N -0.57 -4.16 6.15 -10.23 -0.06 -4.22 16 28 H 0.42 1.45 8.96 -40.82 -0.37 1.08 16 29 C 0.11 1.51 5.38 -2.53 -0.01 1.50 16 30 H 0.10 1.85 6.01 -51.93 -0.31 1.54 16 31 H 0.06 0.73 6.72 -51.93 -0.35 0.38 16 32 H 0.02 0.23 8.06 -51.93 -0.42 -0.19 16 33 H 0.09 1.50 6.72 -51.93 -0.35 1.15 16 34 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 35 H 0.39 9.67 7.90 -40.82 -0.32 9.34 16 36 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.08 0.57 7.88 -51.93 -0.41 0.16 16 38 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.17 1.47 8.06 -52.48 -0.42 1.05 16 44 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.08 1.12 7.68 -51.93 -0.40 0.72 16 LS Contribution 381.15 15.07 5.74 5.74 Total: -1.00 -38.00 381.15 -8.77 -46.76 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.66 Total: 9.42 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -1.89 Total: 11.68 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: -1.11 Total: -65.73 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.16 Total: -24.13 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.00 -8.77 -46.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193048373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.495 kcal (2) G-P(sol) polarization free energy of solvation -37.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds