Wall clock time and date at job start Tue Mar 31 2020 18:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00117 * 2 1 4 4 C 1.50700 * 109.47224 * 293.95395 * 3 2 1 5 5 O 1.21293 * 119.99753 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00120 * 179.97438 * 4 3 2 7 7 C 1.37097 * 119.99930 * 180.27456 * 6 4 3 8 8 H 1.07997 * 119.99801 * 359.73138 * 7 6 4 9 9 C 1.38946 * 119.99966 * 179.72791 * 7 6 4 10 10 N 1.31413 * 120.00056 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00244 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46859 * 89.99859 * 11 9 7 13 13 H 1.48494 * 109.47383 * 210.00023 * 11 9 7 14 14 H 1.48499 * 109.47044 * 330.00376 * 11 9 7 15 15 C 1.46902 * 110.99832 * 123.95582 * 2 1 3 16 16 H 1.08999 * 110.88795 * 297.25534 * 15 2 1 17 17 C 1.55159 * 111.00730 * 61.14170 * 15 2 1 18 18 C 1.54370 * 102.92191 * 153.54215 * 17 15 2 19 19 N 1.47012 * 107.28826 * 337.86423 * 18 17 15 20 20 C 1.34780 * 125.65116 * 178.87020 * 19 18 17 21 21 O 1.21277 * 120.00472 * 180.02562 * 20 19 18 22 22 C 1.50705 * 119.99442 * 0.03955 * 20 19 18 23 23 C 1.50698 * 109.47040 * 180.02562 * 22 20 19 24 24 N 1.30497 * 125.65070 * 305.02449 * 23 22 20 25 25 C 1.34127 * 109.25790 * 179.97438 * 24 23 22 26 26 C 1.34668 * 108.02089 * 0.02562 * 25 24 23 27 27 N 1.35044 * 125.65257 * 124.71688 * 23 22 20 28 28 H 0.96997 * 126.39416 * 0.02562 * 27 23 22 29 29 C 1.47426 * 108.70735 * 358.90613 * 19 18 17 30 30 H 1.08998 * 109.47130 * 66.03943 * 1 2 3 31 31 H 1.09005 * 109.46955 * 186.04133 * 1 2 3 32 32 H 1.09004 * 109.46843 * 306.03710 * 1 2 3 33 33 H 1.09005 * 109.47245 * 173.95390 * 3 2 1 34 34 H 1.09002 * 109.47200 * 53.95566 * 3 2 1 35 35 H 0.97000 * 119.99579 * 0.02562 * 6 4 3 36 36 H 0.96998 * 120.00037 * 179.97438 * 10 9 7 37 37 H 1.09000 * 110.71753 * 271.94293 * 17 15 2 38 38 H 1.09008 * 110.71809 * 35.21317 * 17 15 2 39 39 H 1.09000 * 109.90267 * 218.42164 * 18 17 15 40 40 H 1.09000 * 109.97123 * 97.34273 * 18 17 15 41 41 H 1.09000 * 109.46973 * 299.99867 * 22 20 19 42 42 H 1.09002 * 109.47169 * 60.00419 * 22 20 19 43 43 H 1.08007 * 125.98857 * 180.02562 * 25 24 23 44 44 H 1.08000 * 126.58930 * 180.02562 * 26 25 24 45 45 H 1.08999 * 110.36690 * 265.29204 * 29 19 18 46 46 H 1.08998 * 110.46101 * 143.01783 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 8 1.0047 1.4456 -2.1407 6 7 2.0181 3.3202 -1.5233 7 6 1.6871 3.9367 -2.7022 8 1 1.1247 3.4008 -3.4525 9 6 2.0751 5.2510 -2.9317 10 7 2.7598 5.9029 -2.0189 11 14 1.6235 6.0914 -4.5377 12 1 0.3092 6.7668 -4.3904 13 1 2.6613 7.0971 -4.8790 14 1 1.5408 5.0783 -5.6203 15 6 1.9954 -0.7660 1.1376 16 1 1.6993 -0.3111 2.0828 17 6 1.5421 -2.2483 1.0675 18 6 2.6575 -2.9872 1.8375 19 7 3.8488 -2.1261 1.8139 20 6 5.0315 -2.4051 2.3970 21 8 5.9498 -1.6175 2.3132 22 6 5.2127 -3.6961 3.1531 23 6 6.6137 -3.7632 3.7040 24 7 7.7112 -3.6428 3.0083 25 6 8.7681 -3.7546 3.8264 26 6 8.3082 -3.9523 5.0766 27 7 6.9416 -3.9521 5.0004 28 1 6.3239 -4.0685 5.7392 29 6 3.5355 -0.9063 1.0474 30 1 -0.3633 0.4173 -0.9391 31 1 -0.3633 -1.0220 0.1082 32 1 -0.3633 0.6046 0.8311 33 1 3.0798 1.3444 0.1082 34 1 1.5612 1.9273 0.8309 35 1 2.5234 3.8013 -0.8495 36 1 3.0310 6.8203 -2.1793 37 1 0.5791 -2.3807 1.5608 38 1 1.4969 -2.5892 0.0331 39 1 2.8773 -3.9375 1.3510 40 1 2.3464 -3.1614 2.8675 41 1 4.4973 -3.7397 3.9743 42 1 5.0457 -4.5376 2.4806 43 1 9.8062 -3.6962 3.5338 44 1 8.9033 -4.0811 5.9686 45 1 3.8458 -1.0207 0.0088 46 1 4.0223 -0.0397 1.4947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193048373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:39 Heat of formation + Delta-G solvation = -19.101390 kcal Electronic energy + Delta-G solvation = -28305.999093 eV Core-core repulsion = 24231.009811 eV Total energy + Delta-G solvation = -4074.989281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.95933 -41.16950 -40.27136 -38.90517 -36.71383 -35.77785 -33.47589 -33.29321 -33.19266 -31.78317 -30.11543 -29.28903 -28.21114 -26.72112 -25.17933 -23.96393 -22.49382 -21.87502 -21.39334 -20.90264 -20.26286 -19.83601 -18.76371 -18.32714 -17.81347 -17.47597 -16.74336 -16.58101 -16.19298 -16.08865 -15.67117 -15.65279 -15.34232 -15.04836 -14.92088 -14.68658 -14.56060 -14.25569 -13.97069 -13.86270 -13.63159 -13.59008 -13.41336 -13.07095 -13.03115 -12.76964 -12.55962 -12.43142 -12.32671 -12.13262 -11.85993 -11.78015 -11.46078 -11.00192 -10.97562 -10.85351 -10.29285 -10.00910 -9.65934 -9.33890 -9.23763 -8.46591 -5.95483 1.07674 1.37368 1.40729 1.54023 1.62834 1.78245 2.04640 2.25647 2.27632 2.37368 2.79557 3.19767 3.29532 3.37747 3.48744 3.70760 3.92003 4.01313 4.08670 4.18762 4.29740 4.34973 4.41138 4.41728 4.44341 4.48497 4.58132 4.61407 4.66139 4.74041 4.78900 4.84543 4.93756 5.04413 5.14669 5.22264 5.22852 5.32983 5.41145 5.83358 5.85293 6.04581 6.21911 6.48519 6.59906 6.60490 7.12597 7.17202 7.23243 7.55893 8.11324 8.71018 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.002131 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.200140 B =13136.210230 C =14468.163804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.525 5.525 3 C 0.055 3.945 4 C 0.443 3.557 5 O -0.610 6.610 6 N -0.577 5.577 7 C -0.330 4.330 8 H 0.081 0.919 9 C -0.017 4.017 10 N -0.923 5.923 11 Si 0.995 3.005 12 H -0.269 1.269 13 H -0.273 1.273 14 H -0.272 1.272 15 C 0.073 3.927 16 H 0.069 0.931 17 C -0.117 4.117 18 C 0.099 3.901 19 N -0.617 5.617 20 C 0.524 3.476 21 O -0.576 6.576 22 C -0.037 4.037 23 C 0.198 3.802 24 N -0.520 5.520 25 C -0.072 4.072 26 C -0.033 4.033 27 N -0.552 5.552 28 H 0.437 0.563 29 C 0.114 3.886 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.028 0.972 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.394 0.606 36 H 0.277 0.723 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.155 0.845 42 H 0.141 0.859 43 H 0.173 0.827 44 H 0.217 0.783 45 H 0.055 0.945 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.096 -23.686 21.230 31.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.250 5.250 3 C -0.076 4.076 4 C 0.231 3.769 5 O -0.496 6.496 6 N -0.214 5.214 7 C -0.460 4.460 8 H 0.099 0.901 9 C -0.216 4.216 10 N -0.564 5.564 11 Si 0.818 3.182 12 H -0.194 1.194 13 H -0.197 1.197 14 H -0.197 1.197 15 C -0.036 4.036 16 H 0.087 0.913 17 C -0.154 4.154 18 C -0.022 4.022 19 N -0.352 5.352 20 C 0.313 3.687 21 O -0.454 6.454 22 C -0.078 4.078 23 C -0.067 4.067 24 N -0.240 5.240 25 C -0.220 4.220 26 C -0.168 4.168 27 N -0.157 5.157 28 H 0.279 0.721 29 C -0.010 4.010 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.046 0.954 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.228 0.772 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.126 0.874 41 H 0.172 0.828 42 H 0.159 0.841 43 H 0.190 0.810 44 H 0.234 0.766 45 H 0.073 0.927 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.539 -23.612 19.376 30.583 hybrid contribution 0.051 1.631 1.003 1.916 sum 1.589 -21.981 20.379 30.016 Atomic orbital electron populations 1.22445 0.85632 1.02775 1.01017 1.61538 1.09485 1.11637 1.42360 1.21760 1.01453 0.90063 0.94304 1.20681 0.83734 0.82198 0.90328 1.90453 1.45023 1.65229 1.48883 1.41963 1.50013 1.11629 1.17809 1.19671 1.34318 0.96176 0.95821 0.90081 1.26085 0.96321 0.96732 1.02469 1.69686 1.38286 1.12565 1.35891 0.84903 0.78241 0.77749 0.77299 1.19419 1.19738 1.19709 1.22814 0.92736 0.96036 0.92030 0.91281 1.22753 0.99345 0.91086 1.02257 1.22417 0.82826 0.94016 1.02982 1.48459 1.12669 1.21170 1.52888 1.20599 0.80346 0.88700 0.79092 1.90783 1.41258 1.51539 1.61841 1.20006 0.89635 0.95929 1.02257 1.22717 0.96367 1.05980 0.81675 1.70164 0.98861 1.19116 1.35814 1.22755 0.98982 1.09246 0.90975 1.23285 0.83339 1.08753 1.01390 1.43161 1.08159 1.55039 1.09335 0.72146 1.22042 0.95345 0.87898 0.95734 0.92609 0.88707 0.95380 0.88685 0.91413 0.77247 0.91372 0.86971 0.90228 0.88729 0.87386 0.82783 0.84100 0.80966 0.76611 0.92710 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.08 127.69 1.16 1.99 16 2 N -0.53 -16.26 4.40 -893.41 -3.93 -20.19 16 3 C 0.06 2.00 5.33 85.56 0.46 2.46 16 4 C 0.44 21.61 7.54 87.66 0.66 22.27 16 5 O -0.61 -33.71 13.88 -3.07 -0.04 -33.75 16 6 N -0.58 -30.63 5.29 -306.99 -1.62 -32.25 16 7 C -0.33 -19.19 9.68 84.04 0.81 -18.37 16 8 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 9 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 10 N -0.92 -51.49 13.05 21.66 0.28 -51.21 16 11 Si 0.99 44.03 29.55 68.60 2.03 46.06 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 13 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 C 0.07 1.60 2.71 46.31 0.13 1.73 16 16 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 17 C -0.12 -1.61 5.30 31.80 0.17 -1.44 16 18 C 0.10 0.98 6.49 86.75 0.56 1.55 16 19 N -0.62 -12.48 3.33 -811.72 -2.70 -15.18 16 20 C 0.52 12.50 7.84 87.66 0.69 13.19 16 21 O -0.58 -21.03 15.81 -3.02 -0.05 -21.08 16 22 C -0.04 -0.48 5.52 29.10 0.16 -0.32 16 23 C 0.20 3.90 6.96 138.13 0.96 4.86 16 24 N -0.52 -14.72 10.58 -188.13 -1.99 -16.71 16 25 C -0.07 -1.59 11.87 83.52 0.99 -0.60 16 26 C -0.03 -0.44 12.04 83.09 1.00 0.56 16 27 N -0.55 -6.60 6.15 -186.28 -1.15 -7.75 16 28 H 0.44 1.33 8.96 -92.71 -0.83 0.49 16 29 C 0.11 3.01 5.38 86.86 0.47 3.48 16 30 H 0.06 2.12 6.01 -2.39 -0.01 2.10 16 31 H 0.09 2.03 6.72 -2.38 -0.02 2.01 16 32 H 0.03 0.73 8.06 -2.38 -0.02 0.71 16 33 H 0.10 3.32 6.72 -2.38 -0.02 3.30 16 34 H 0.07 2.19 8.06 -2.39 -0.02 2.17 16 35 H 0.39 20.16 7.90 -92.71 -0.73 19.43 16 36 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 37 H 0.11 0.93 7.88 -2.39 -0.02 0.91 16 38 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 44 H 0.22 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.06 1.72 7.68 -2.39 -0.02 1.70 16 Total: -1.00 -90.57 381.15 -1.03 -91.59 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -0.54 Total: 29.57 kcal Atomic # 6 Polarization: 22.21 SS G_CDS: 8.68 Total: 30.90 kcal Atomic # 7 Polarization: -132.18 SS G_CDS: -11.11 Total: -143.28 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -0.09 Total: -54.84 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -90.57 -1.03 -91.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193048373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.491 kcal (2) G-P(sol) polarization free energy of solvation -90.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds