Wall clock time and date at job start Tue Mar 31 2020 18:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46911 * 1 3 3 C 1.46892 * 110.99922 * 2 1 4 4 C 1.50698 * 109.47514 * 293.95670 * 3 2 1 5 5 O 1.21291 * 120.00137 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00410 * 180.02562 * 4 3 2 7 7 C 1.37098 * 120.00257 * 179.97438 * 6 4 3 8 8 H 1.07998 * 120.00029 * 0.02562 * 7 6 4 9 9 C 1.38954 * 120.00016 * 180.02562 * 7 6 4 10 10 N 1.31408 * 119.99851 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99817 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47004 * 90.00093 * 11 9 7 13 13 H 1.48505 * 109.46910 * 209.99657 * 11 9 7 14 14 H 1.48498 * 109.47221 * 329.99715 * 11 9 7 15 15 C 1.46898 * 111.00072 * 123.95664 * 2 1 3 16 16 H 1.08997 * 110.88309 * 297.73550 * 15 2 1 17 17 C 1.55163 * 111.03582 * 61.63755 * 15 2 1 18 18 C 1.54337 * 103.01919 * 153.39754 * 17 15 2 19 19 N 1.47023 * 107.26171 * 338.13788 * 18 17 15 20 20 C 1.34777 * 125.64451 * 178.85322 * 19 18 17 21 21 O 1.21279 * 120.00204 * 179.69204 * 20 19 18 22 22 C 1.50700 * 120.00340 * 359.69032 * 20 19 18 23 23 N 1.46496 * 109.47547 * 180.02562 * 22 20 19 24 24 C 1.36880 * 126.39523 * 90.00009 * 23 22 20 25 25 C 1.34666 * 106.81902 * 180.02562 * 24 23 22 26 26 N 1.34133 * 108.01882 * 0.02562 * 25 24 23 27 27 C 1.30499 * 109.25693 * 359.97438 * 26 25 24 28 28 C 1.47418 * 108.70482 * 358.58802 * 19 18 17 29 29 H 1.09001 * 109.46697 * 301.82925 * 1 2 3 30 30 H 1.08999 * 109.46720 * 61.82903 * 1 2 3 31 31 H 1.09001 * 109.46849 * 181.83185 * 1 2 3 32 32 H 1.09002 * 109.47317 * 53.95946 * 3 2 1 33 33 H 1.09005 * 109.47341 * 173.95532 * 3 2 1 34 34 H 0.97003 * 119.99905 * 0.02562 * 6 4 3 35 35 H 0.96999 * 119.99788 * 180.02562 * 10 9 7 36 36 H 1.08996 * 110.71807 * 271.95475 * 17 15 2 37 37 H 1.08999 * 110.71769 * 35.04940 * 17 15 2 38 38 H 1.09001 * 109.99055 * 218.66604 * 18 17 15 39 39 H 1.08991 * 109.78086 * 97.49600 * 18 17 15 40 40 H 1.09005 * 109.46594 * 59.99578 * 22 20 19 41 41 H 1.09005 * 109.47207 * 300.00449 * 22 20 19 42 42 H 1.08005 * 126.59149 * 359.74015 * 24 23 22 43 43 H 1.08003 * 125.99311 * 180.02562 * 25 24 23 44 44 H 1.07996 * 125.64962 * 180.02562 * 27 26 25 45 45 H 1.09003 * 110.36862 * 143.19854 * 28 19 18 46 46 H 1.09003 * 110.36728 * 265.40550 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 8 1.0047 1.4457 -2.1407 6 7 2.0189 3.3199 -1.5236 7 6 1.6932 3.9345 -2.7051 8 1 1.1301 3.3989 -3.4551 9 6 2.0874 5.2465 -2.9375 10 7 2.7721 5.8983 -2.0247 11 14 1.6429 6.0841 -4.5469 12 1 0.3312 6.7656 -4.4045 13 1 2.6859 7.0844 -4.8888 14 1 1.5584 5.0682 -5.6268 15 6 1.9956 -0.7660 1.1375 16 1 1.6924 -0.3159 2.0827 17 6 1.5529 -2.2512 1.0615 18 6 2.6706 -2.9870 1.8305 19 7 3.8548 -2.1157 1.8185 20 6 5.0371 -2.3891 2.4049 21 8 5.9511 -1.5959 2.3258 22 6 5.2235 -3.6806 3.1589 23 7 6.5841 -3.7390 3.6987 24 6 6.9928 -3.2816 4.9223 25 6 8.3129 -3.5323 5.0110 26 7 8.6999 -4.1262 3.8722 27 6 7.6696 -4.2534 3.0815 28 6 3.5368 -0.8963 1.0535 29 1 -0.3633 0.5420 0.8732 30 1 -0.3633 0.4852 -0.9059 31 1 -0.3633 -1.0272 0.0329 32 1 1.5612 1.9273 0.8310 33 1 3.0798 1.3444 0.1082 34 1 2.5249 3.8008 -0.8502 35 1 3.0469 6.8143 -2.1868 36 1 0.5887 -2.3917 1.5500 37 1 1.5118 -2.5888 0.0259 38 1 2.9010 -3.9323 1.3391 39 1 2.3541 -3.1682 2.8575 40 1 5.0633 -4.5215 2.4841 41 1 4.5057 -3.7301 3.9778 42 1 6.3761 -2.8063 5.6708 43 1 8.9487 -3.2966 5.8516 44 1 7.6828 -4.6968 2.0969 45 1 4.0161 -0.0284 1.5066 46 1 3.8540 -1.0055 0.0164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194449245.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:52 Heat of formation + Delta-G solvation = 22.504264 kcal Electronic energy + Delta-G solvation = -28375.919440 eV Core-core repulsion = 24302.734315 eV Total energy + Delta-G solvation = -4073.185125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.31968 -40.43832 -38.85737 -37.79460 -35.62663 -34.29524 -33.86464 -31.41316 -31.19913 -29.84755 -29.50901 -27.96156 -27.76100 -24.99635 -24.12243 -23.10032 -21.58789 -21.50688 -20.42969 -19.90416 -19.14392 -17.94018 -17.88013 -17.70674 -16.90296 -16.01991 -15.91958 -15.49080 -14.81614 -14.76107 -14.66843 -14.45687 -14.30352 -14.11814 -13.95540 -13.77098 -13.48038 -13.44959 -13.25393 -13.03574 -12.95195 -12.56318 -12.22568 -11.95125 -11.57616 -11.47365 -11.36733 -11.18648 -11.05605 -10.87467 -10.66018 -10.40853 -10.24157 -10.22081 -9.77569 -9.50752 -9.05833 -8.72378 -8.55881 -8.04511 -7.94812 -6.43965 -3.85053 1.66871 2.09840 2.25393 2.69924 3.00833 3.15933 3.25117 3.30686 3.77744 3.85186 3.88871 4.11459 4.17918 4.28537 4.36799 4.42822 4.50036 4.57882 4.66204 4.93593 4.98400 5.06778 5.12989 5.20792 5.22606 5.44891 5.46465 5.52345 5.60582 5.64241 5.72130 5.74454 5.80854 5.92740 5.94052 5.94885 6.22716 6.45443 6.49245 6.83924 7.02157 7.11250 7.23980 7.52963 7.65919 7.85207 8.03220 8.58429 9.15330 9.51209 10.02408 10.73669 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.002144 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.052056 B =13056.191013 C =14337.359656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.506 5.506 3 C 0.042 3.958 4 C 0.444 3.556 5 O -0.578 6.578 6 N -0.563 5.563 7 C -0.299 4.299 8 H 0.104 0.896 9 C 0.022 3.978 10 N -0.901 5.901 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.069 3.931 16 H 0.055 0.945 17 C -0.123 4.123 18 C 0.098 3.902 19 N -0.614 5.614 20 C 0.508 3.492 21 O -0.517 6.517 22 C 0.093 3.907 23 N -0.448 5.448 24 C -0.047 4.047 25 C -0.028 4.028 26 N -0.494 5.494 27 C 0.194 3.806 28 C 0.113 3.887 29 H 0.016 0.984 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.392 0.608 35 H 0.272 0.728 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.172 0.828 43 H 0.170 0.830 44 H 0.203 0.797 45 H 0.080 0.920 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 -20.476 14.994 25.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.231 5.231 3 C -0.089 4.089 4 C 0.229 3.771 5 O -0.463 6.463 6 N -0.199 5.199 7 C -0.429 4.429 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.542 5.542 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.194 1.194 15 C -0.041 4.041 16 H 0.073 0.927 17 C -0.161 4.161 18 C -0.025 4.025 19 N -0.350 5.350 20 C 0.294 3.706 21 O -0.391 6.391 22 C -0.034 4.034 23 N -0.131 5.131 24 C -0.179 4.179 25 C -0.175 4.175 26 N -0.212 5.212 27 C -0.089 4.089 28 C -0.009 4.009 29 H 0.034 0.966 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.225 0.775 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.189 0.811 43 H 0.187 0.813 44 H 0.219 0.781 45 H 0.098 0.902 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.798 -20.741 13.763 24.904 hybrid contribution -1.096 1.604 0.595 2.032 sum -0.298 -19.137 14.358 23.926 Atomic orbital electron populations 1.22562 0.86052 1.01360 1.02527 1.61627 1.08984 1.13001 1.39452 1.21943 1.00794 0.88684 0.97512 1.19641 0.85647 0.82970 0.88840 1.90477 1.44057 1.64634 1.47100 1.41869 1.49211 1.10754 1.18071 1.19690 1.33005 0.95477 0.94730 0.87867 1.25277 0.96741 0.96685 0.99255 1.69611 1.37839 1.12266 1.34460 0.85855 0.78012 0.78920 0.81486 1.20427 1.20900 1.19384 1.22769 0.93706 0.94356 0.93265 0.92679 1.22700 0.97266 0.93911 1.02215 1.22172 0.85338 0.94157 1.00872 1.48398 1.11819 1.21449 1.53320 1.20358 0.81655 0.88587 0.79982 1.90838 1.39756 1.48840 1.59693 1.21629 0.83358 0.97766 1.00645 1.45024 1.08399 1.45374 1.14317 1.22676 0.97902 1.07680 0.89682 1.22270 0.92975 1.04332 0.97973 1.70296 1.28329 1.19136 1.03410 1.24978 0.81117 1.02526 1.00239 1.22322 0.94623 0.86890 0.97110 0.96562 0.88181 0.92014 0.93285 0.89356 0.77483 0.91817 0.89822 0.88808 0.90726 0.91125 0.85803 0.86087 0.81064 0.81322 0.78060 0.90203 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.05 60.07 0.54 0.86 16 2 N -0.51 -7.49 4.40 -233.74 -1.03 -8.52 16 3 C 0.04 0.71 5.33 -4.98 -0.03 0.69 16 4 C 0.44 10.13 7.52 -10.99 -0.08 10.05 16 5 O -0.58 -14.95 13.88 5.55 0.08 -14.87 16 6 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 10 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 11 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 C 0.07 0.75 2.71 -65.57 -0.18 0.57 16 16 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 17 C -0.12 -0.92 5.32 -24.89 -0.13 -1.05 16 18 C 0.10 0.54 6.49 -3.06 -0.02 0.52 16 19 N -0.61 -5.59 3.33 -170.52 -0.57 -6.16 16 20 C 0.51 5.18 7.92 -10.99 -0.09 5.09 16 21 O -0.52 -8.01 16.69 5.56 0.09 -7.92 16 22 C 0.09 0.55 5.82 -5.20 -0.03 0.52 16 23 N -0.45 -4.05 2.24 -119.87 -0.27 -4.31 16 24 C -0.05 -0.44 11.58 -16.56 -0.19 -0.63 16 25 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 26 N -0.49 -6.29 11.25 -14.67 -0.16 -6.45 16 27 C 0.19 2.00 12.56 -90.38 -1.14 0.87 16 28 C 0.11 1.32 5.35 -2.54 -0.01 1.31 16 29 H 0.02 0.21 8.13 -51.93 -0.42 -0.21 16 30 H 0.10 1.81 5.91 -51.93 -0.31 1.50 16 31 H 0.06 0.70 6.92 -51.93 -0.36 0.35 16 32 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 33 H 0.09 1.41 6.70 -51.93 -0.35 1.06 16 34 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.08 0.49 7.97 -51.93 -0.41 0.08 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 43 H 0.17 1.42 8.06 -52.48 -0.42 1.00 16 44 H 0.20 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.08 1.04 7.68 -51.93 -0.40 0.64 16 46 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -36.69 383.65 -8.97 -45.66 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.73 Total: 8.38 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -1.81 Total: 10.37 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -1.36 Total: -63.31 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.17 Total: -22.79 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.69 -8.97 -45.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194449245.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.165 kcal (2) G-P(sol) polarization free energy of solvation -36.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds