Wall clock time and date at job start Tue Mar 31 2020 18:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46911 * 1 3 3 C 1.46892 * 110.99922 * 2 1 4 4 C 1.50698 * 109.47514 * 293.95670 * 3 2 1 5 5 O 1.21291 * 120.00137 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00410 * 180.02562 * 4 3 2 7 7 C 1.37098 * 120.00257 * 179.97438 * 6 4 3 8 8 H 1.07998 * 120.00029 * 0.02562 * 7 6 4 9 9 C 1.38954 * 120.00016 * 180.02562 * 7 6 4 10 10 N 1.31408 * 119.99851 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99817 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47004 * 90.00093 * 11 9 7 13 13 H 1.48505 * 109.46910 * 209.99657 * 11 9 7 14 14 H 1.48498 * 109.47221 * 329.99715 * 11 9 7 15 15 C 1.46898 * 111.00072 * 123.95664 * 2 1 3 16 16 H 1.08997 * 110.88309 * 297.73550 * 15 2 1 17 17 C 1.55163 * 111.03582 * 61.63755 * 15 2 1 18 18 C 1.54337 * 103.01919 * 153.39754 * 17 15 2 19 19 N 1.47023 * 107.26171 * 338.13788 * 18 17 15 20 20 C 1.34777 * 125.64451 * 178.85322 * 19 18 17 21 21 O 1.21279 * 120.00204 * 179.69204 * 20 19 18 22 22 C 1.50700 * 120.00340 * 359.69032 * 20 19 18 23 23 N 1.46496 * 109.47547 * 180.02562 * 22 20 19 24 24 C 1.36880 * 126.39523 * 90.00009 * 23 22 20 25 25 C 1.34666 * 106.81902 * 180.02562 * 24 23 22 26 26 N 1.34133 * 108.01882 * 0.02562 * 25 24 23 27 27 C 1.30499 * 109.25693 * 359.97438 * 26 25 24 28 28 C 1.47418 * 108.70482 * 358.58802 * 19 18 17 29 29 H 1.09001 * 109.46697 * 301.82925 * 1 2 3 30 30 H 1.08999 * 109.46720 * 61.82903 * 1 2 3 31 31 H 1.09001 * 109.46849 * 181.83185 * 1 2 3 32 32 H 1.09002 * 109.47317 * 53.95946 * 3 2 1 33 33 H 1.09005 * 109.47341 * 173.95532 * 3 2 1 34 34 H 0.97003 * 119.99905 * 0.02562 * 6 4 3 35 35 H 0.96999 * 119.99788 * 180.02562 * 10 9 7 36 36 H 1.08996 * 110.71807 * 271.95475 * 17 15 2 37 37 H 1.08999 * 110.71769 * 35.04940 * 17 15 2 38 38 H 1.09001 * 109.99055 * 218.66604 * 18 17 15 39 39 H 1.08991 * 109.78086 * 97.49600 * 18 17 15 40 40 H 1.09005 * 109.46594 * 59.99578 * 22 20 19 41 41 H 1.09005 * 109.47207 * 300.00449 * 22 20 19 42 42 H 1.08005 * 126.59149 * 359.74015 * 24 23 22 43 43 H 1.08003 * 125.99311 * 180.02562 * 25 24 23 44 44 H 1.07996 * 125.64962 * 180.02562 * 27 26 25 45 45 H 1.09003 * 110.36862 * 143.19854 * 28 19 18 46 46 H 1.09003 * 110.36728 * 265.40550 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 8 1.0047 1.4457 -2.1407 6 7 2.0189 3.3199 -1.5236 7 6 1.6932 3.9345 -2.7051 8 1 1.1301 3.3989 -3.4551 9 6 2.0874 5.2465 -2.9375 10 7 2.7721 5.8983 -2.0247 11 14 1.6429 6.0841 -4.5469 12 1 0.3312 6.7656 -4.4045 13 1 2.6859 7.0844 -4.8888 14 1 1.5584 5.0682 -5.6268 15 6 1.9956 -0.7660 1.1375 16 1 1.6924 -0.3159 2.0827 17 6 1.5529 -2.2512 1.0615 18 6 2.6706 -2.9870 1.8305 19 7 3.8548 -2.1157 1.8185 20 6 5.0371 -2.3891 2.4049 21 8 5.9511 -1.5959 2.3258 22 6 5.2235 -3.6806 3.1589 23 7 6.5841 -3.7390 3.6987 24 6 6.9928 -3.2816 4.9223 25 6 8.3129 -3.5323 5.0110 26 7 8.6999 -4.1262 3.8722 27 6 7.6696 -4.2534 3.0815 28 6 3.5368 -0.8963 1.0535 29 1 -0.3633 0.5420 0.8732 30 1 -0.3633 0.4852 -0.9059 31 1 -0.3633 -1.0272 0.0329 32 1 1.5612 1.9273 0.8310 33 1 3.0798 1.3444 0.1082 34 1 2.5249 3.8008 -0.8502 35 1 3.0469 6.8143 -2.1868 36 1 0.5887 -2.3917 1.5500 37 1 1.5118 -2.5888 0.0259 38 1 2.9010 -3.9323 1.3391 39 1 2.3541 -3.1682 2.8575 40 1 5.0633 -4.5215 2.4841 41 1 4.5057 -3.7301 3.9778 42 1 6.3761 -2.8063 5.6708 43 1 8.9487 -3.2966 5.8516 44 1 7.6828 -4.6968 2.0969 45 1 4.0161 -0.0284 1.5066 46 1 3.8540 -1.0055 0.0164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194449245.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:51 Heat of formation + Delta-G solvation = -4.533672 kcal Electronic energy + Delta-G solvation = -28377.091893 eV Core-core repulsion = 24302.734315 eV Total energy + Delta-G solvation = -4074.357578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.99991 -41.25314 -40.32358 -39.00721 -36.79224 -35.80327 -34.96359 -33.30367 -32.15560 -30.57516 -30.25966 -29.32279 -28.46114 -26.73607 -25.19389 -24.02405 -22.29673 -22.19531 -21.44231 -20.95007 -20.48285 -19.85686 -18.63065 -18.41230 -17.89245 -17.42337 -16.78045 -16.60745 -16.29986 -16.09634 -15.85975 -15.48525 -15.19732 -15.15632 -15.04668 -14.80935 -14.61957 -14.31560 -14.07734 -13.95492 -13.75593 -13.65473 -13.44840 -13.19671 -13.09409 -12.80602 -12.59550 -12.45179 -12.35900 -12.14241 -11.90731 -11.81927 -11.49949 -11.46787 -10.98124 -10.52034 -10.30538 -10.02148 -9.78878 -9.43133 -9.27129 -8.47930 -5.96769 0.97606 1.36509 1.39527 1.40240 1.53192 1.64703 2.02677 2.05465 2.24755 2.27365 2.74529 3.18350 3.23003 3.37159 3.62196 3.66451 3.78131 3.87583 4.00195 4.04075 4.13256 4.16217 4.26650 4.32946 4.37569 4.46412 4.57820 4.58296 4.60906 4.71504 4.76844 4.79655 4.87796 4.99434 5.11262 5.19855 5.27233 5.29750 5.39933 5.81470 5.82712 6.02309 6.17981 6.19292 6.39864 6.58448 6.94415 7.11369 7.13474 7.54611 8.09800 8.69610 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.002144 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.052056 B =13056.191013 C =14337.359656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.524 5.524 3 C 0.055 3.945 4 C 0.443 3.557 5 O -0.610 6.610 6 N -0.577 5.577 7 C -0.330 4.330 8 H 0.081 0.919 9 C -0.016 4.016 10 N -0.923 5.923 11 Si 0.994 3.006 12 H -0.269 1.269 13 H -0.273 1.273 14 H -0.272 1.272 15 C 0.072 3.928 16 H 0.068 0.932 17 C -0.117 4.117 18 C 0.097 3.903 19 N -0.610 5.610 20 C 0.504 3.496 21 O -0.583 6.583 22 C 0.099 3.901 23 N -0.449 5.449 24 C -0.044 4.044 25 C -0.061 4.061 26 N -0.539 5.539 27 C 0.182 3.818 28 C 0.113 3.887 29 H 0.029 0.971 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.394 0.606 35 H 0.277 0.723 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.200 0.800 43 H 0.179 0.821 44 H 0.225 0.775 45 H 0.057 0.943 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 -22.533 16.491 27.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.249 5.249 3 C -0.076 4.076 4 C 0.230 3.770 5 O -0.496 6.496 6 N -0.214 5.214 7 C -0.460 4.460 8 H 0.099 0.901 9 C -0.215 4.215 10 N -0.564 5.564 11 Si 0.817 3.183 12 H -0.195 1.195 13 H -0.198 1.198 14 H -0.197 1.197 15 C -0.037 4.037 16 H 0.086 0.914 17 C -0.155 4.155 18 C -0.025 4.025 19 N -0.344 5.344 20 C 0.293 3.707 21 O -0.462 6.462 22 C -0.026 4.026 23 N -0.131 5.131 24 C -0.176 4.176 25 C -0.207 4.207 26 N -0.258 5.258 27 C -0.101 4.101 28 C -0.011 4.011 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.228 0.772 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.180 0.820 41 H 0.179 0.821 42 H 0.216 0.784 43 H 0.196 0.804 44 H 0.241 0.759 45 H 0.076 0.924 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.916 -22.838 15.283 27.495 hybrid contribution -0.613 2.188 0.130 2.276 sum -1.529 -20.649 15.413 25.813 Atomic orbital electron populations 1.22446 0.85661 1.03051 1.00778 1.61549 1.09468 1.11600 1.42270 1.21748 1.01460 0.90106 0.94271 1.20681 0.83785 0.82170 0.90352 1.90455 1.45024 1.65219 1.48893 1.41971 1.50026 1.11717 1.17683 1.19666 1.34293 0.96379 0.95649 0.90061 1.26075 0.96280 0.96740 1.02451 1.69681 1.38188 1.12661 1.35871 0.84916 0.78235 0.77781 0.77345 1.19461 1.19775 1.19665 1.22819 0.92746 0.96146 0.92037 0.91409 1.22743 0.99413 0.90976 1.02403 1.22497 0.82851 0.93916 1.03205 1.48462 1.12829 1.20913 1.52156 1.21184 0.80779 0.89345 0.79399 1.90818 1.41927 1.51263 1.62227 1.21975 0.82417 0.96044 1.02149 1.45205 1.09405 1.44530 1.13992 1.23131 0.97708 1.06514 0.90268 1.22647 0.94343 1.05416 0.98269 1.70230 1.30158 1.20724 1.04665 1.25453 0.81267 1.02481 1.00857 1.22088 0.95339 0.87756 0.95906 0.95286 0.92628 0.88795 0.91507 0.88579 0.77249 0.91365 0.87144 0.90045 0.87871 0.87317 0.81967 0.82074 0.78354 0.80364 0.75871 0.92445 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 9.05 127.69 1.16 1.92 16 2 N -0.52 -15.05 4.40 -893.43 -3.93 -18.98 16 3 C 0.06 1.89 5.33 85.56 0.46 2.35 16 4 C 0.44 20.88 7.52 87.66 0.66 21.54 16 5 O -0.61 -32.75 13.88 -3.06 -0.04 -32.79 16 6 N -0.58 -29.85 5.29 -306.99 -1.62 -31.47 16 7 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 8 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 9 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 10 N -0.92 -50.67 13.05 21.66 0.28 -50.39 16 11 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 13 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 15 C 0.07 1.38 2.71 46.31 0.13 1.51 16 16 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 17 C -0.12 -1.27 5.32 31.79 0.17 -1.10 16 18 C 0.10 0.55 6.49 86.73 0.56 1.12 16 19 N -0.61 -9.38 3.33 -811.80 -2.70 -12.08 16 20 C 0.50 9.10 7.92 87.66 0.69 9.79 16 21 O -0.58 -18.05 16.69 -3.03 -0.05 -18.10 16 22 C 0.10 0.73 5.82 85.63 0.50 1.23 16 23 N -0.45 -7.03 2.24 -533.15 -1.19 -8.23 16 24 C -0.04 -0.74 11.58 83.09 0.96 0.23 16 25 C -0.06 -1.31 11.87 83.52 0.99 -0.31 16 26 N -0.54 -13.79 11.25 -200.31 -2.25 -16.04 16 27 C 0.18 3.57 12.56 180.26 2.26 5.83 16 28 C 0.11 2.56 5.35 86.85 0.46 3.03 16 29 H 0.03 0.70 8.13 -2.39 -0.02 0.68 16 30 H 0.05 2.04 5.91 -2.39 -0.01 2.02 16 31 H 0.09 1.89 6.92 -2.39 -0.02 1.87 16 32 H 0.07 2.05 8.11 -2.39 -0.02 2.03 16 33 H 0.10 3.13 6.70 -2.38 -0.02 3.12 16 34 H 0.39 19.65 7.90 -92.71 -0.73 18.92 16 35 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 36 H 0.11 0.67 7.97 -2.39 -0.02 0.65 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.16 0.00 8.14 -2.38 -0.02 -0.02 16 41 H 0.16 -0.04 8.14 -2.38 -0.02 -0.06 16 42 H 0.20 2.02 8.06 -2.91 -0.02 1.99 16 43 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 44 H 0.23 2.89 8.06 -2.91 -0.02 2.87 16 45 H 0.06 1.54 7.68 -2.39 -0.02 1.52 16 46 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -86.56 383.65 1.07 -85.49 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.27 Total: 28.58 kcal Atomic # 6 Polarization: 18.44 SS G_CDS: 10.29 Total: 28.73 kcal Atomic # 7 Polarization: -125.78 SS G_CDS: -11.42 Total: -137.20 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -0.09 Total: -50.89 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -86.56 1.07 -85.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194449245.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.956 kcal (2) G-P(sol) polarization free energy of solvation -86.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds