Wall clock time and date at job start Tue Mar 31 2020 18:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99828 * 2 1 4 4 O 1.21284 * 119.99754 * 180.27842 * 3 2 1 5 5 C 1.50696 * 120.00137 * 0.28058 * 3 2 1 6 6 N 1.46500 * 109.47324 * 179.97438 * 5 3 2 7 7 C 1.34942 * 126.03589 * 125.00136 * 6 5 3 8 8 C 1.35324 * 107.74475 * 179.97438 * 7 6 5 9 9 C 1.39870 * 107.91998 * 359.97438 * 8 7 6 10 10 N 1.30844 * 108.19750 * 359.74239 * 9 8 7 11 11 C 1.46506 * 120.00239 * 180.28195 * 2 1 3 12 12 H 1.08997 * 110.27336 * 177.63438 * 11 2 1 13 13 C 1.54599 * 110.30904 * 55.43503 * 11 2 1 14 14 C 1.54933 * 102.91953 * 219.12781 * 13 11 2 15 15 N 1.48537 * 103.22937 * 37.41930 * 14 13 11 16 16 C 1.46895 * 110.99814 * 200.27714 * 15 14 13 17 17 C 1.50696 * 109.47601 * 307.39473 * 16 15 14 18 18 O 1.21305 * 119.99565 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00571 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00297 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99955 * 359.97438 * 20 19 17 22 22 C 1.38944 * 120.00217 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99763 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00260 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46957 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47213 * 119.99599 * 24 22 20 27 27 H 1.48502 * 109.47126 * 239.99779 * 24 22 20 28 28 C 1.47909 * 105.81662 * 320.78905 * 15 14 13 29 29 H 1.08998 * 109.46661 * 269.71691 * 1 2 3 30 30 H 1.08993 * 109.47575 * 29.72405 * 1 2 3 31 31 H 1.09001 * 109.46870 * 149.72361 * 1 2 3 32 32 H 1.09004 * 109.47043 * 299.99732 * 5 3 2 33 33 H 1.09000 * 109.46978 * 59.99653 * 5 3 2 34 34 H 1.07999 * 126.13035 * 359.97438 * 7 6 5 35 35 H 1.07995 * 126.03718 * 179.97438 * 8 7 6 36 36 H 1.07998 * 125.89724 * 179.97438 * 9 8 7 37 37 H 1.08999 * 110.72371 * 337.49057 * 13 11 2 38 38 H 1.09001 * 110.71704 * 100.77042 * 13 11 2 39 39 H 1.08996 * 110.66751 * 278.97807 * 14 13 11 40 40 H 1.08999 * 110.80709 * 155.91846 * 14 13 11 41 41 H 1.09001 * 109.47386 * 67.39463 * 16 15 14 42 42 H 1.09004 * 109.47066 * 187.38847 * 16 15 14 43 43 H 0.96997 * 119.99474 * 359.97438 * 19 17 16 44 44 H 0.97002 * 119.99650 * 179.97438 * 23 22 20 45 45 H 1.08996 * 109.91492 * 265.97851 * 28 15 14 46 46 H 1.08996 * 109.91138 * 144.68233 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0051 5 6 1.3854 2.4723 0.0064 6 7 2.3373 3.5858 0.0057 7 6 2.3740 4.5983 -0.8856 8 6 3.3950 5.4161 -0.5391 9 6 4.0027 4.8853 0.6034 10 7 3.3658 3.7913 0.9342 11 6 2.1976 -1.2687 -0.0062 12 1 3.2711 -1.0848 -0.0475 13 6 1.7535 -2.1389 -1.2045 14 6 1.7236 -3.5666 -0.6036 15 7 1.2097 -3.3455 0.7724 16 6 1.5516 -4.4732 1.6495 17 6 1.0981 -5.7611 1.0119 18 8 0.5441 -5.7415 -0.0670 19 7 1.3072 -6.9346 1.6408 20 6 0.8951 -8.1064 1.0604 21 1 0.4026 -8.0890 0.0994 22 6 1.1112 -9.3163 1.7085 23 7 1.7110 -9.3375 2.8776 24 14 0.5491 -10.9127 0.9180 25 1 -0.0940 -10.6189 -0.3879 26 1 1.7215 -11.7986 0.7036 27 1 -0.4266 -11.5899 1.8096 28 6 1.8447 -2.0957 1.2440 29 1 -0.3632 -0.0051 1.0277 30 1 -0.3634 0.8924 -0.5095 31 1 -0.3633 -0.8875 -0.5181 32 1 0.7549 2.5322 -0.8808 33 1 0.7624 2.5278 0.8991 34 1 1.7078 4.7322 -1.7251 35 1 3.6887 6.3189 -1.0538 36 1 4.8490 5.3078 1.1247 37 1 0.7621 -1.8443 -1.5487 38 1 2.4789 -2.0769 -2.0158 39 1 2.7261 -3.9935 -0.5759 40 1 1.0483 -4.2100 -1.1676 41 1 2.6308 -4.5025 1.7997 42 1 1.0542 -4.3491 2.6115 43 1 1.7499 -6.9503 2.5037 44 1 1.8615 -10.1821 3.3302 45 1 2.7508 -2.3278 1.8036 46 1 1.1489 -1.5400 1.8726 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267756878.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:26 Heat of formation + Delta-G solvation = 44.011396 kcal Electronic energy + Delta-G solvation = -28419.129756 eV Core-core repulsion = 24346.877250 eV Total energy + Delta-G solvation = -4072.252506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.46573 -40.33762 -38.94028 -37.53653 -35.33747 -33.96593 -33.61681 -31.58972 -31.07859 -30.30717 -28.87220 -27.73345 -27.25032 -26.12274 -24.22177 -22.11443 -21.35515 -21.22285 -20.66327 -19.30681 -19.20739 -17.96025 -17.80241 -17.37994 -16.55188 -16.11821 -15.90155 -15.42456 -15.06479 -14.71453 -14.51742 -14.45844 -13.95215 -13.92611 -13.81248 -13.55198 -13.42386 -13.09586 -13.01531 -12.67871 -12.49622 -12.40509 -12.26658 -11.80088 -11.72904 -11.57511 -11.43488 -11.11533 -11.00120 -10.85038 -10.59142 -10.35362 -10.27251 -10.26262 -9.57267 -9.53541 -8.93242 -8.85443 -8.41347 -8.06098 -7.94481 -6.45635 -3.86715 1.60582 2.07565 2.24536 2.66662 2.71863 3.13457 3.24480 3.31218 3.84822 3.95524 4.05396 4.16122 4.26276 4.49340 4.57610 4.62897 4.71196 4.78289 4.86508 4.99319 5.13333 5.20384 5.23577 5.28471 5.37216 5.38847 5.50206 5.53932 5.69866 5.75103 5.77099 5.81171 5.90734 5.96809 6.18304 6.22628 6.31245 6.40869 6.59490 6.66393 7.03971 7.16268 7.23170 7.48373 7.51740 7.83597 8.01901 8.56920 9.13742 9.49430 10.00552 10.71984 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.041740 B = 0.001836 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.654354 B =15244.262611 C =15500.412837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.603 5.603 3 C 0.500 3.500 4 O -0.512 6.512 5 C 0.118 3.882 6 N -0.364 5.364 7 C 0.050 3.950 8 C -0.271 4.271 9 C 0.039 3.961 10 N -0.267 5.267 11 C 0.132 3.868 12 H 0.105 0.895 13 C -0.136 4.136 14 C 0.038 3.962 15 N -0.493 5.493 16 C 0.036 3.964 17 C 0.442 3.558 18 O -0.582 6.582 19 N -0.561 5.561 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.900 5.900 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.024 3.976 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.115 0.885 34 H 0.173 0.827 35 H 0.147 0.853 36 H 0.182 0.818 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.122 0.878 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.050 0.950 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.278 26.242 -5.124 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.337 5.337 3 C 0.285 3.715 4 O -0.386 6.386 5 C -0.007 4.007 6 N -0.147 5.147 7 C -0.095 4.095 8 C -0.301 4.301 9 C -0.149 4.149 10 N -0.087 5.087 11 C 0.029 3.971 12 H 0.123 0.877 13 C -0.175 4.175 14 C -0.089 4.089 15 N -0.217 5.217 16 C -0.096 4.096 17 C 0.228 3.772 18 O -0.467 6.467 19 N -0.197 5.197 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.541 5.541 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.105 4.105 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.190 0.810 35 H 0.165 0.835 36 H 0.199 0.801 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.140 0.860 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.691 25.027 -4.886 25.556 hybrid contribution 0.890 -0.320 -0.198 0.966 sum -0.802 24.707 -5.084 25.238 Atomic orbital electron populations 1.21907 0.78962 1.03707 1.02744 1.47868 1.07254 1.05322 1.73287 1.20509 0.88456 0.85115 0.77401 1.90786 1.13361 1.86613 1.47862 1.21532 0.89747 0.83416 1.06050 1.48125 1.25691 1.18916 1.21987 1.22537 1.00887 0.89915 0.96153 1.21498 1.01232 1.04943 1.02383 1.23941 1.00245 0.93526 0.97144 1.77520 1.00239 1.17908 1.13026 1.22030 0.97560 0.82065 0.95485 0.87743 1.22982 1.02155 0.95512 0.96809 1.23482 0.99820 0.95403 0.90182 1.64643 1.53881 1.00855 1.02342 1.22107 0.99051 0.91081 0.97361 1.19682 0.85645 0.84492 0.87410 1.90429 1.47338 1.86484 1.22453 1.41861 1.52281 1.04981 1.20559 1.19750 1.35535 0.82770 1.04850 0.87792 1.25283 0.97098 0.99699 0.95875 1.69626 1.42222 1.27776 1.14502 0.85792 0.78285 0.81002 0.79207 1.19209 1.20763 1.20714 1.23278 0.98395 0.92287 0.96538 0.91841 0.91474 0.89208 0.85788 0.86765 0.80978 0.83509 0.80087 0.90120 0.90917 0.94343 0.85983 0.93233 0.89187 0.77429 0.91866 0.93147 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 9.29 59.85 0.56 1.03 16 2 N -0.60 -6.05 2.77 -172.38 -0.48 -6.52 16 3 C 0.50 5.65 7.71 -10.99 -0.08 5.56 16 4 O -0.51 -8.24 15.08 5.55 0.08 -8.15 16 5 C 0.12 0.88 5.54 -5.20 -0.03 0.85 16 6 N -0.36 -3.74 3.39 -62.55 -0.21 -3.95 16 7 C 0.05 0.40 11.45 -17.22 -0.20 0.20 16 8 C -0.27 -2.28 10.80 -40.01 -0.43 -2.71 16 9 C 0.04 0.39 12.03 -17.36 -0.21 0.19 16 10 N -0.27 -3.47 11.66 30.63 0.36 -3.11 16 11 C 0.13 1.62 3.40 -66.57 -0.23 1.40 16 12 H 0.10 1.46 6.96 -51.93 -0.36 1.10 16 13 C -0.14 -1.68 6.57 -24.87 -0.16 -1.84 16 14 C 0.04 0.62 5.31 -1.90 -0.01 0.61 16 15 N -0.49 -7.89 5.26 -231.89 -1.22 -9.11 16 16 C 0.04 0.63 5.52 -4.98 -0.03 0.60 16 17 C 0.44 10.14 7.49 -10.99 -0.08 10.06 16 18 O -0.58 -14.89 13.09 5.54 0.07 -14.82 16 19 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 20 C -0.30 -8.21 9.68 -14.94 -0.14 -8.36 16 21 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 24 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 C 0.02 0.32 6.19 -2.75 -0.02 0.30 16 29 H 0.06 0.40 7.96 -51.93 -0.41 -0.01 16 30 H 0.07 0.24 6.43 -51.93 -0.33 -0.10 16 31 H 0.09 0.71 6.18 -51.93 -0.32 0.39 16 32 H 0.12 0.44 7.32 -51.93 -0.38 0.06 16 33 H 0.11 0.65 8.11 -51.93 -0.42 0.23 16 34 H 0.17 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.08 0.92 6.08 -51.93 -0.32 0.60 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.65 8.02 -51.93 -0.42 0.23 16 40 H 0.12 2.34 5.96 -51.93 -0.31 2.03 16 41 H 0.05 0.82 7.81 -51.93 -0.41 0.41 16 42 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.05 0.67 7.57 -51.93 -0.39 0.28 16 46 H 0.08 1.01 7.34 -51.93 -0.38 0.63 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -35.82 376.51 -7.64 -43.47 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.40 Total: 10.01 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -1.16 Total: 8.38 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.89 Total: -60.34 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.16 Total: -22.97 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.82 -7.64 -43.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267756878.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.477 kcal (2) G-P(sol) polarization free energy of solvation -35.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds