Wall clock time and date at job start Tue Mar 31 2020 18:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99828 * 2 1 4 4 O 1.21284 * 119.99754 * 180.27842 * 3 2 1 5 5 C 1.50696 * 120.00137 * 0.28058 * 3 2 1 6 6 N 1.46500 * 109.47324 * 179.97438 * 5 3 2 7 7 C 1.34942 * 126.03589 * 125.00136 * 6 5 3 8 8 C 1.35324 * 107.74475 * 179.97438 * 7 6 5 9 9 C 1.39870 * 107.91998 * 359.97438 * 8 7 6 10 10 N 1.30844 * 108.19750 * 359.74239 * 9 8 7 11 11 C 1.46506 * 120.00239 * 180.28195 * 2 1 3 12 12 H 1.08997 * 110.27336 * 177.63438 * 11 2 1 13 13 C 1.54599 * 110.30904 * 55.43503 * 11 2 1 14 14 C 1.54933 * 102.91953 * 219.12781 * 13 11 2 15 15 N 1.48537 * 103.22937 * 37.41930 * 14 13 11 16 16 C 1.46895 * 110.99814 * 200.27714 * 15 14 13 17 17 C 1.50696 * 109.47601 * 307.39473 * 16 15 14 18 18 O 1.21305 * 119.99565 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00571 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00297 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99955 * 359.97438 * 20 19 17 22 22 C 1.38944 * 120.00217 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99763 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00260 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46957 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47213 * 119.99599 * 24 22 20 27 27 H 1.48502 * 109.47126 * 239.99779 * 24 22 20 28 28 C 1.47909 * 105.81662 * 320.78905 * 15 14 13 29 29 H 1.08998 * 109.46661 * 269.71691 * 1 2 3 30 30 H 1.08993 * 109.47575 * 29.72405 * 1 2 3 31 31 H 1.09001 * 109.46870 * 149.72361 * 1 2 3 32 32 H 1.09004 * 109.47043 * 299.99732 * 5 3 2 33 33 H 1.09000 * 109.46978 * 59.99653 * 5 3 2 34 34 H 1.07999 * 126.13035 * 359.97438 * 7 6 5 35 35 H 1.07995 * 126.03718 * 179.97438 * 8 7 6 36 36 H 1.07998 * 125.89724 * 179.97438 * 9 8 7 37 37 H 1.08999 * 110.72371 * 337.49057 * 13 11 2 38 38 H 1.09001 * 110.71704 * 100.77042 * 13 11 2 39 39 H 1.08996 * 110.66751 * 278.97807 * 14 13 11 40 40 H 1.08999 * 110.80709 * 155.91846 * 14 13 11 41 41 H 1.09001 * 109.47386 * 67.39463 * 16 15 14 42 42 H 1.09004 * 109.47066 * 187.38847 * 16 15 14 43 43 H 0.96997 * 119.99474 * 359.97438 * 19 17 16 44 44 H 0.97002 * 119.99650 * 179.97438 * 23 22 20 45 45 H 1.08996 * 109.91492 * 265.97851 * 28 15 14 46 46 H 1.08996 * 109.91138 * 144.68233 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0051 5 6 1.3854 2.4723 0.0064 6 7 2.3373 3.5858 0.0057 7 6 2.3740 4.5983 -0.8856 8 6 3.3950 5.4161 -0.5391 9 6 4.0027 4.8853 0.6034 10 7 3.3658 3.7913 0.9342 11 6 2.1976 -1.2687 -0.0062 12 1 3.2711 -1.0848 -0.0475 13 6 1.7535 -2.1389 -1.2045 14 6 1.7236 -3.5666 -0.6036 15 7 1.2097 -3.3455 0.7724 16 6 1.5516 -4.4732 1.6495 17 6 1.0981 -5.7611 1.0119 18 8 0.5441 -5.7415 -0.0670 19 7 1.3072 -6.9346 1.6408 20 6 0.8951 -8.1064 1.0604 21 1 0.4026 -8.0890 0.0994 22 6 1.1112 -9.3163 1.7085 23 7 1.7110 -9.3375 2.8776 24 14 0.5491 -10.9127 0.9180 25 1 -0.0940 -10.6189 -0.3879 26 1 1.7215 -11.7986 0.7036 27 1 -0.4266 -11.5899 1.8096 28 6 1.8447 -2.0957 1.2440 29 1 -0.3632 -0.0051 1.0277 30 1 -0.3634 0.8924 -0.5095 31 1 -0.3633 -0.8875 -0.5181 32 1 0.7549 2.5322 -0.8808 33 1 0.7624 2.5278 0.8991 34 1 1.7078 4.7322 -1.7251 35 1 3.6887 6.3189 -1.0538 36 1 4.8490 5.3078 1.1247 37 1 0.7621 -1.8443 -1.5487 38 1 2.4789 -2.0769 -2.0158 39 1 2.7261 -3.9935 -0.5759 40 1 1.0483 -4.2100 -1.1676 41 1 2.6308 -4.5025 1.7997 42 1 1.0542 -4.3491 2.6115 43 1 1.7499 -6.9503 2.5037 44 1 1.8615 -10.1821 3.3302 45 1 2.7508 -2.3278 1.8036 46 1 1.1489 -1.5400 1.8726 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267756878.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:25 Heat of formation + Delta-G solvation = 16.291448 kcal Electronic energy + Delta-G solvation = -28420.331783 eV Core-core repulsion = 24346.877250 eV Total energy + Delta-G solvation = -4073.454533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.12865 -41.30343 -40.38560 -38.97743 -36.42320 -35.82397 -34.33980 -33.36756 -32.47963 -30.95660 -29.91294 -28.71654 -28.17367 -27.28578 -25.94040 -22.95158 -22.53918 -21.95745 -21.48279 -21.06676 -20.07456 -19.88426 -18.61561 -18.12332 -17.74093 -17.31654 -16.93690 -16.70764 -16.42527 -16.19975 -15.70002 -15.55603 -15.41730 -15.07112 -14.74725 -14.47656 -14.26960 -14.10498 -14.02920 -13.61658 -13.58572 -13.38578 -13.23772 -13.17080 -13.02353 -12.91756 -12.73021 -12.63949 -12.41472 -12.27380 -12.12097 -11.74690 -11.53196 -11.47503 -11.12678 -10.29189 -10.23158 -10.02413 -9.72522 -9.47990 -9.40174 -8.48051 -5.96781 0.97701 1.35709 1.41351 1.44800 1.51401 1.55475 1.97250 2.01782 2.02933 2.27320 2.79471 3.18817 3.28209 3.31762 3.60446 3.72042 3.72374 4.04399 4.06907 4.13826 4.20042 4.23188 4.24746 4.33097 4.35291 4.45232 4.51307 4.61804 4.69405 4.73379 4.76906 4.92777 4.94161 4.97392 5.09285 5.18670 5.22407 5.40542 5.46017 5.75748 5.79511 5.87167 6.04864 6.11863 6.33509 6.58269 6.82344 7.04167 7.11186 7.53480 8.08470 8.69593 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.041740 B = 0.001836 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.654354 B =15244.262611 C =15500.412837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.598 5.598 3 C 0.496 3.504 4 O -0.569 6.569 5 C 0.118 3.882 6 N -0.375 5.375 7 C 0.056 3.944 8 C -0.286 4.286 9 C 0.025 3.975 10 N -0.327 5.327 11 C 0.139 3.861 12 H 0.084 0.916 13 C -0.120 4.120 14 C 0.039 3.961 15 N -0.498 5.498 16 C 0.046 3.954 17 C 0.441 3.559 18 O -0.610 6.610 19 N -0.573 5.573 20 C -0.331 4.331 21 H 0.082 0.918 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.273 1.273 27 H -0.271 1.271 28 C 0.030 3.970 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.172 0.828 33 H 0.136 0.864 34 H 0.216 0.784 35 H 0.169 0.831 36 H 0.196 0.804 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.024 0.976 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.110 0.890 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.049 0.951 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.810 27.997 -5.743 28.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.331 5.331 3 C 0.284 3.716 4 O -0.447 6.447 5 C -0.006 4.006 6 N -0.158 5.158 7 C -0.089 4.089 8 C -0.315 4.315 9 C -0.161 4.161 10 N -0.148 5.148 11 C 0.034 3.966 12 H 0.103 0.897 13 C -0.159 4.159 14 C -0.089 4.089 15 N -0.223 5.223 16 C -0.086 4.086 17 C 0.229 3.771 18 O -0.497 6.497 19 N -0.210 5.210 20 C -0.460 4.460 21 H 0.100 0.900 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.198 1.198 27 H -0.196 1.196 28 C -0.099 4.099 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.098 0.902 32 H 0.189 0.811 33 H 0.153 0.847 34 H 0.233 0.767 35 H 0.187 0.813 36 H 0.212 0.788 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.128 0.872 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.250 26.803 -5.487 27.551 hybrid contribution 1.350 -0.797 -0.037 1.568 sum -1.900 26.006 -5.524 26.653 Atomic orbital electron populations 1.22185 0.76551 1.05302 1.03813 1.47907 1.08537 1.04165 1.72479 1.21246 0.88014 0.86416 0.75973 1.90767 1.15993 1.87441 1.50526 1.21865 0.89087 0.80387 1.09290 1.48357 1.25597 1.19916 1.21967 1.23282 1.00835 0.88619 0.96187 1.21885 1.01466 1.06038 1.02069 1.24384 1.00569 0.93177 0.98007 1.77426 1.02356 1.19568 1.15466 1.21727 0.96902 0.83212 0.94774 0.89746 1.22856 1.03286 0.92900 0.96841 1.23294 0.97961 0.97177 0.90434 1.64642 1.54429 1.01183 1.02021 1.22011 0.99881 0.88876 0.97818 1.20600 0.84087 0.85595 0.86845 1.90428 1.48210 1.87244 1.23776 1.41935 1.53034 1.05168 1.20856 1.19716 1.37076 0.84446 1.04772 0.89994 1.26068 0.96753 1.02321 0.96288 1.69690 1.42491 1.28843 1.15232 0.84850 0.78140 0.77052 0.78169 1.19592 1.19814 1.19632 1.23280 0.98500 0.91003 0.97081 0.91020 0.87310 0.90234 0.81056 0.84680 0.76734 0.81344 0.78758 0.88596 0.90266 0.95780 0.89246 0.91873 0.87156 0.77127 0.91345 0.93279 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 9.29 127.77 1.19 1.81 16 2 N -0.60 -10.68 2.77 -817.68 -2.27 -12.95 16 3 C 0.50 10.33 7.71 87.66 0.68 11.00 16 4 O -0.57 -18.35 15.08 -3.04 -0.05 -18.40 16 5 C 0.12 1.36 5.54 85.63 0.47 1.83 16 6 N -0.38 -6.90 3.39 -351.79 -1.19 -8.09 16 7 C 0.06 0.72 11.45 83.54 0.96 1.67 16 8 C -0.29 -4.28 10.80 21.99 0.24 -4.04 16 9 C 0.02 0.50 12.03 85.24 1.03 1.53 16 10 N -0.33 -8.43 11.66 -57.02 -0.66 -9.10 16 11 C 0.14 3.28 3.40 45.87 0.16 3.44 16 12 H 0.08 2.39 6.96 -2.39 -0.02 2.38 16 13 C -0.12 -2.89 6.57 31.80 0.21 -2.68 16 14 C 0.04 1.28 5.31 86.65 0.46 1.74 16 15 N -0.50 -15.68 5.26 -887.57 -4.67 -20.35 16 16 C 0.05 1.60 5.52 85.56 0.47 2.07 16 17 C 0.44 20.66 7.49 87.66 0.66 21.32 16 18 O -0.61 -32.20 13.09 -3.11 -0.04 -32.24 16 19 N -0.57 -29.27 5.29 -306.98 -1.62 -30.89 16 20 C -0.33 -18.59 9.68 84.04 0.81 -17.78 16 21 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 22 C -0.01 -0.78 5.50 84.92 0.47 -0.32 16 23 N -0.92 -49.83 13.05 21.66 0.28 -49.54 16 24 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 25 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 C 0.03 0.76 6.19 86.45 0.54 1.29 16 29 H 0.07 0.65 7.96 -2.39 -0.02 0.63 16 30 H 0.11 0.19 6.43 -2.39 -0.02 0.17 16 31 H 0.08 1.02 6.18 -2.39 -0.01 1.00 16 32 H 0.17 0.24 7.32 -2.38 -0.02 0.22 16 33 H 0.14 1.00 8.11 -2.39 -0.02 0.98 16 34 H 0.22 0.63 8.06 -2.91 -0.02 0.60 16 35 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.20 2.87 8.06 -2.91 -0.02 2.85 16 37 H 0.10 2.02 6.08 -2.39 -0.01 2.01 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.02 0.83 8.02 -2.39 -0.02 0.82 16 40 H 0.09 3.55 5.96 -2.39 -0.01 3.54 16 41 H 0.06 2.06 7.81 -2.39 -0.02 2.04 16 42 H 0.11 3.44 8.14 -2.38 -0.02 3.42 16 43 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 44 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 45 H 0.05 1.26 7.57 -2.39 -0.02 1.25 16 46 H 0.10 2.16 7.34 -2.39 -0.02 2.15 16 Total: -1.00 -82.23 376.51 0.42 -81.81 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: 0.28 Total: 32.12 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: 8.33 Total: 22.89 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -10.13 Total: -130.92 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -0.09 Total: -50.64 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -82.23 0.42 -81.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267756878.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.106 kcal (2) G-P(sol) polarization free energy of solvation -82.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds