Wall clock time and date at job start Tue Mar 31 2020 18:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 114.00147 * 2 1 4 4 C 1.52996 * 109.47295 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47054 * 64.47859 * 4 3 2 6 6 C 1.46981 * 111.00007 * 71.14500 * 5 4 3 7 7 C 1.53466 * 109.68013 * 53.58664 * 6 5 4 8 8 N 1.46285 * 108.20610 * 49.45194 * 7 6 5 9 9 C 1.35207 * 124.01801 * 343.77719 * 8 7 6 10 10 N 1.30272 * 107.63712 * 179.75017 * 9 8 7 11 11 N 1.28952 * 109.78536 * 0.11544 * 10 9 8 12 12 C 1.31977 * 109.53192 * 359.97438 * 11 10 9 13 13 C 1.47449 * 126.66420 * 179.97438 * 12 11 10 14 14 O 1.21597 * 119.99765 * 179.97438 * 13 12 11 15 15 N 1.34778 * 119.99963 * 0.02562 * 13 12 11 16 16 C 1.47067 * 136.05756 * 359.62680 * 15 13 12 17 17 C 1.53240 * 88.08095 * 207.20346 * 16 15 13 18 18 C 1.50701 * 114.32674 * 220.46784 * 17 16 15 19 19 H 1.08000 * 119.99778 * 93.76219 * 18 17 16 20 20 C 1.37876 * 120.00043 * 273.76264 * 18 17 16 21 21 N 1.31510 * 119.99804 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00196 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47205 * 89.99906 * 22 20 18 24 24 H 1.48500 * 109.47155 * 210.00493 * 22 20 18 25 25 H 1.48513 * 109.46869 * 329.99876 * 22 20 18 26 26 C 1.47068 * 136.05539 * 179.97438 * 15 13 12 27 27 C 1.47374 * 111.00272 * 195.38459 * 5 4 3 28 28 H 1.08998 * 109.47289 * 59.99913 * 1 2 3 29 29 H 1.09005 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46864 * 299.99571 * 1 2 3 31 31 H 1.09001 * 109.46864 * 60.00193 * 3 2 1 32 32 H 1.08997 * 109.47003 * 300.00512 * 3 2 1 33 33 H 1.09001 * 109.47224 * 304.48233 * 4 3 2 34 34 H 1.08997 * 109.47108 * 184.48002 * 4 3 2 35 35 H 1.09002 * 109.43431 * 173.64434 * 6 5 4 36 36 H 1.08994 * 109.44294 * 293.52035 * 6 5 4 37 37 H 1.09003 * 109.71386 * 169.12763 * 7 6 5 38 38 H 1.08998 * 109.71663 * 289.72683 * 7 6 5 39 39 H 1.08998 * 113.46646 * 321.93013 * 16 15 13 40 40 H 1.08993 * 113.46828 * 92.37502 * 16 15 13 41 41 H 1.08998 * 114.01623 * 87.71435 * 17 16 15 42 42 H 0.97003 * 120.00006 * 180.02562 * 21 20 18 43 43 H 1.08999 * 113.46833 * 267.62424 * 26 15 13 44 44 H 1.08998 * 113.46614 * 38.06178 * 26 15 13 45 45 H 1.08995 * 109.74519 * 166.29267 * 27 5 4 46 46 H 1.09003 * 109.78180 * 45.59889 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9760 0.5514 -1.2508 6 6 3.8043 1.4621 -2.3916 7 6 4.5037 2.7962 -2.0976 8 7 5.8609 2.5083 -1.6340 9 6 6.2717 1.2942 -1.2037 10 7 7.5282 1.3962 -0.8752 11 7 7.9338 2.6045 -1.0707 12 6 6.9385 3.3336 -1.5393 13 6 6.9856 4.7644 -1.8928 14 8 5.9901 5.3188 -2.3172 15 7 8.1323 5.4573 -1.7464 16 6 9.4951 5.1629 -1.2786 17 6 9.6209 6.6368 -0.8786 18 6 10.9628 7.2507 -1.1845 19 1 11.1156 7.7793 -2.1138 20 6 11.9954 7.1376 -0.2779 21 7 13.1663 7.6737 -0.5447 22 14 11.7310 6.2239 1.3298 23 1 12.0667 4.7892 1.1448 24 1 12.6057 6.8057 2.3794 25 1 10.3103 6.3507 1.7432 26 6 8.5696 6.8422 -1.9783 27 6 5.3704 0.0864 -1.1446 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8521 0.5758 0.8462 34 1 3.9786 2.1773 0.0796 35 1 4.2410 1.0126 -3.2834 36 1 2.7418 1.6387 -2.5582 37 1 4.5451 3.3976 -3.0058 38 1 3.9568 3.3355 -1.3242 39 1 9.5246 4.4802 -0.4294 40 1 10.1750 4.8707 -2.0788 41 1 9.2639 6.8553 0.1277 42 1 13.8929 7.5938 0.0929 43 1 9.0007 7.0015 -2.9666 44 1 7.8135 7.5846 -1.7229 45 1 5.5989 -0.5846 -1.9726 46 1 5.5145 -0.4346 -0.1980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276896235.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:11 Heat of formation + Delta-G solvation = 66.819278 kcal Electronic energy + Delta-G solvation = -29387.274243 eV Core-core repulsion = 25316.010762 eV Total energy + Delta-G solvation = -4071.263482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.49641 -39.75544 -39.39630 -37.78936 -37.47280 -34.50458 -32.71307 -32.14096 -30.56586 -30.46660 -29.16825 -26.84036 -26.00886 -25.30862 -25.13832 -24.52854 -23.39556 -22.22444 -20.52895 -19.69059 -18.89053 -17.49901 -17.30038 -17.18007 -16.83217 -16.68899 -16.53082 -15.90176 -15.54442 -15.37017 -15.20060 -14.96305 -14.57262 -14.17168 -13.98859 -13.57799 -13.33814 -13.11191 -13.06028 -12.66052 -12.51315 -12.22383 -12.13353 -12.04831 -11.86023 -11.78828 -11.66986 -11.36121 -10.94960 -10.88870 -10.54625 -10.40082 -10.08289 -10.07251 -9.98666 -9.60567 -9.38098 -9.26319 -9.13091 -8.66467 -8.24417 -6.20240 -4.24048 1.10863 1.92930 2.37815 3.09088 3.21517 3.27846 3.32672 3.34127 3.34835 3.37760 3.79366 3.94366 4.30027 4.32744 4.34257 4.38941 4.57479 4.71661 4.77362 4.83710 4.90558 4.93656 5.00064 5.01712 5.06727 5.07662 5.20678 5.27612 5.28322 5.36592 5.51652 5.71594 5.77979 5.84603 5.97674 6.16797 6.22960 6.24825 6.35340 6.41121 6.49956 6.52193 6.76033 7.14030 7.53078 7.96421 8.18236 8.35599 8.49993 8.81529 9.40187 10.91259 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021907 B = 0.002619 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.825063 B =10689.683693 C =11026.659449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.068 3.932 4 C 0.042 3.958 5 N -0.516 5.516 6 C 0.036 3.964 7 C 0.068 3.932 8 N -0.443 5.443 9 C 0.146 3.854 10 N -0.280 5.280 11 N -0.239 5.239 12 C 0.148 3.852 13 C 0.620 3.380 14 O -0.557 6.557 15 N -0.615 5.615 16 C 0.091 3.909 17 C -0.013 4.013 18 C -0.511 4.511 19 H 0.081 0.919 20 C 0.080 3.920 21 N -0.891 5.891 22 Si 0.872 3.128 23 H -0.270 1.270 24 H -0.286 1.286 25 H -0.263 1.263 26 C 0.120 3.880 27 C 0.144 3.856 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.267 0.733 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.115 0.885 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.218 -15.080 -0.789 28.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C -0.009 4.009 4 C -0.085 4.085 5 N -0.237 5.237 6 C -0.092 4.092 7 C -0.056 4.056 8 N -0.134 5.134 9 C -0.123 4.123 10 N -0.123 5.123 11 N -0.085 5.085 12 C -0.119 4.119 13 C 0.406 3.594 14 O -0.436 6.436 15 N -0.346 5.346 16 C -0.031 4.031 17 C -0.033 4.033 18 C -0.549 4.549 19 H 0.099 0.901 20 C -0.124 4.124 21 N -0.527 5.527 22 Si 0.699 3.301 23 H -0.195 1.195 24 H -0.212 1.212 25 H -0.188 1.188 26 C -0.001 4.001 27 C 0.013 3.987 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.133 0.867 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -23.591 -15.757 -0.591 28.376 hybrid contribution -0.905 0.819 0.491 1.316 sum -24.497 -14.938 -0.100 28.692 Atomic orbital electron populations 1.22744 0.81376 1.02784 0.99747 1.87989 1.19134 1.26889 1.95283 1.22498 0.92672 0.85471 1.00305 1.22382 0.94365 0.99121 0.92645 1.62420 1.18986 1.38643 1.03657 1.22767 1.02327 0.89101 0.95025 1.22845 0.78638 1.00840 1.03286 1.45870 1.11552 1.08909 1.47031 1.25911 0.95047 0.89732 1.01573 1.74272 1.07306 1.11621 1.19145 1.75081 1.22499 0.97497 1.13419 1.24303 0.84651 0.95860 1.07067 1.15737 0.83320 0.81349 0.79039 1.90766 1.34418 1.69329 1.49078 1.49656 1.09711 1.14585 1.60642 1.23992 0.78243 1.01719 0.99120 1.20921 0.95811 0.91391 0.95194 1.20690 0.92312 1.35649 1.06254 0.90053 1.24974 0.94935 0.94462 0.98045 1.69882 1.02465 1.43828 1.36515 0.86906 0.78775 0.80795 0.83669 1.19507 1.21195 1.18793 1.23301 0.95343 0.80038 1.01368 1.21104 0.81648 0.89794 1.06138 0.94197 0.89587 0.94331 0.92650 0.93122 0.88892 0.92618 0.88764 0.87373 0.86823 0.88654 0.91220 0.89137 0.91426 0.92289 0.89389 0.91481 0.86724 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.08 10.64 -35.23 -0.37 -3.45 16 3 C 0.07 0.46 6.07 37.16 0.23 0.68 16 4 C 0.04 0.33 4.80 -3.83 -0.02 0.31 16 5 N -0.52 -4.04 4.86 -235.22 -1.14 -5.19 16 6 C 0.04 0.26 5.67 -3.54 -0.02 0.24 16 7 C 0.07 0.68 5.46 -3.92 -0.02 0.65 16 8 N -0.44 -6.10 2.95 -111.33 -0.33 -6.43 16 9 C 0.15 1.92 7.36 -155.40 -1.14 0.78 16 10 N -0.28 -4.75 12.21 32.74 0.40 -4.35 16 11 N -0.24 -4.56 10.84 32.33 0.35 -4.21 16 12 C 0.15 2.63 7.91 -154.76 -1.22 1.40 16 13 C 0.62 11.94 8.07 -12.51 -0.10 11.84 16 14 O -0.56 -11.02 16.37 5.28 0.09 -10.94 16 15 N -0.61 -12.23 3.69 -186.64 -0.69 -12.92 16 16 C 0.09 1.91 6.89 -8.63 -0.06 1.85 16 17 C -0.01 -0.30 2.99 -91.38 -0.27 -0.57 16 18 C -0.51 -13.24 9.38 -34.44 -0.32 -13.56 16 19 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 20 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 21 N -0.89 -25.79 13.96 55.43 0.77 -25.02 16 22 Si 0.87 20.62 27.42 -169.99 -4.66 15.96 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.26 -6.00 6.22 56.52 0.35 -5.65 16 26 C 0.12 2.35 8.19 -8.49 -0.07 2.28 16 27 C 0.14 1.24 6.20 -4.66 -0.03 1.21 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.29 6.70 -51.93 -0.35 -0.06 16 33 H 0.09 0.73 7.77 -51.93 -0.40 0.33 16 34 H 0.06 0.50 5.57 -51.93 -0.29 0.21 16 35 H 0.09 0.63 8.08 -51.93 -0.42 0.21 16 36 H 0.11 0.56 6.85 -51.93 -0.36 0.20 16 37 H 0.11 1.20 7.53 -51.93 -0.39 0.80 16 38 H 0.10 0.90 6.76 -51.93 -0.35 0.55 16 39 H 0.07 1.48 7.51 -51.93 -0.39 1.09 16 40 H 0.09 1.89 8.10 -51.93 -0.42 1.47 16 41 H 0.07 1.52 6.50 -51.93 -0.34 1.18 16 42 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.09 1.65 8.10 -51.93 -0.42 1.23 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.12 0.89 7.79 -51.93 -0.40 0.48 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -32.69 371.31 -8.71 -41.40 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.68 Total: -0.90 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: -2.04 Total: 10.45 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.64 Total: -58.12 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.29 Total: -14.39 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.66 Total: 15.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.69 -8.71 -41.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276896235.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.222 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds