Wall clock time and date at job start Tue Mar 31 2020 18:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 114.00147 * 2 1 4 4 C 1.52996 * 109.47295 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47054 * 64.47859 * 4 3 2 6 6 C 1.46981 * 111.00007 * 71.14500 * 5 4 3 7 7 C 1.53466 * 109.68013 * 53.58664 * 6 5 4 8 8 N 1.46285 * 108.20610 * 49.45194 * 7 6 5 9 9 C 1.35207 * 124.01801 * 343.77719 * 8 7 6 10 10 N 1.30272 * 107.63712 * 179.75017 * 9 8 7 11 11 N 1.28952 * 109.78536 * 0.11544 * 10 9 8 12 12 C 1.31977 * 109.53192 * 359.97438 * 11 10 9 13 13 C 1.47449 * 126.66420 * 179.97438 * 12 11 10 14 14 O 1.21597 * 119.99765 * 179.97438 * 13 12 11 15 15 N 1.34778 * 119.99963 * 0.02562 * 13 12 11 16 16 C 1.47067 * 136.05756 * 359.62680 * 15 13 12 17 17 C 1.53240 * 88.08095 * 207.20346 * 16 15 13 18 18 C 1.50701 * 114.32674 * 220.46784 * 17 16 15 19 19 H 1.08000 * 119.99778 * 93.76219 * 18 17 16 20 20 C 1.37876 * 120.00043 * 273.76264 * 18 17 16 21 21 N 1.31510 * 119.99804 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00196 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47205 * 89.99906 * 22 20 18 24 24 H 1.48500 * 109.47155 * 210.00493 * 22 20 18 25 25 H 1.48513 * 109.46869 * 329.99876 * 22 20 18 26 26 C 1.47068 * 136.05539 * 179.97438 * 15 13 12 27 27 C 1.47374 * 111.00272 * 195.38459 * 5 4 3 28 28 H 1.08998 * 109.47289 * 59.99913 * 1 2 3 29 29 H 1.09005 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46864 * 299.99571 * 1 2 3 31 31 H 1.09001 * 109.46864 * 60.00193 * 3 2 1 32 32 H 1.08997 * 109.47003 * 300.00512 * 3 2 1 33 33 H 1.09001 * 109.47224 * 304.48233 * 4 3 2 34 34 H 1.08997 * 109.47108 * 184.48002 * 4 3 2 35 35 H 1.09002 * 109.43431 * 173.64434 * 6 5 4 36 36 H 1.08994 * 109.44294 * 293.52035 * 6 5 4 37 37 H 1.09003 * 109.71386 * 169.12763 * 7 6 5 38 38 H 1.08998 * 109.71663 * 289.72683 * 7 6 5 39 39 H 1.08998 * 113.46646 * 321.93013 * 16 15 13 40 40 H 1.08993 * 113.46828 * 92.37502 * 16 15 13 41 41 H 1.08998 * 114.01623 * 87.71435 * 17 16 15 42 42 H 0.97003 * 120.00006 * 180.02562 * 21 20 18 43 43 H 1.08999 * 113.46833 * 267.62424 * 26 15 13 44 44 H 1.08998 * 113.46614 * 38.06178 * 26 15 13 45 45 H 1.08995 * 109.74519 * 166.29267 * 27 5 4 46 46 H 1.09003 * 109.78180 * 45.59889 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9760 0.5514 -1.2508 6 6 3.8043 1.4621 -2.3916 7 6 4.5037 2.7962 -2.0976 8 7 5.8609 2.5083 -1.6340 9 6 6.2717 1.2942 -1.2037 10 7 7.5282 1.3962 -0.8752 11 7 7.9338 2.6045 -1.0707 12 6 6.9385 3.3336 -1.5393 13 6 6.9856 4.7644 -1.8928 14 8 5.9901 5.3188 -2.3172 15 7 8.1323 5.4573 -1.7464 16 6 9.4951 5.1629 -1.2786 17 6 9.6209 6.6368 -0.8786 18 6 10.9628 7.2507 -1.1845 19 1 11.1156 7.7793 -2.1138 20 6 11.9954 7.1376 -0.2779 21 7 13.1663 7.6737 -0.5447 22 14 11.7310 6.2239 1.3298 23 1 12.0667 4.7892 1.1448 24 1 12.6057 6.8057 2.3794 25 1 10.3103 6.3507 1.7432 26 6 8.5696 6.8422 -1.9783 27 6 5.3704 0.0864 -1.1446 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8521 0.5758 0.8462 34 1 3.9786 2.1773 0.0796 35 1 4.2410 1.0126 -3.2834 36 1 2.7418 1.6387 -2.5582 37 1 4.5451 3.3976 -3.0058 38 1 3.9568 3.3355 -1.3242 39 1 9.5246 4.4802 -0.4294 40 1 10.1750 4.8707 -2.0788 41 1 9.2639 6.8553 0.1277 42 1 13.8929 7.5938 0.0929 43 1 9.0007 7.0015 -2.9666 44 1 7.8135 7.5846 -1.7229 45 1 5.5989 -0.5846 -1.9726 46 1 5.5145 -0.4346 -0.1980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276896235.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:10 Heat of formation + Delta-G solvation = 43.171005 kcal Electronic energy + Delta-G solvation = -29388.299710 eV Core-core repulsion = 25316.010762 eV Total energy + Delta-G solvation = -4072.288948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.64008 -41.30690 -40.14817 -39.06943 -38.34930 -35.48261 -34.71768 -33.20270 -31.80730 -31.26643 -30.42989 -27.69858 -27.19291 -26.86168 -26.17436 -25.35478 -24.71317 -23.05470 -22.10946 -20.59064 -20.30876 -19.25257 -18.58426 -18.23073 -17.88048 -17.54560 -17.39310 -17.01542 -16.74036 -16.37161 -16.08272 -15.91627 -15.74879 -15.36564 -15.18144 -14.84266 -14.77297 -14.30031 -14.17843 -13.62151 -13.61334 -13.47817 -13.39276 -13.08969 -12.78432 -12.71317 -12.67183 -12.58793 -12.48418 -11.93782 -11.86014 -11.81769 -11.69483 -11.43859 -11.32884 -11.20421 -10.70425 -10.58838 -10.54032 -9.85161 -9.80627 -8.29879 -6.36634 -0.15030 0.80664 1.17194 1.39207 1.43064 1.48561 1.78022 1.91120 2.35345 2.53520 2.73944 2.87453 2.97531 3.02049 3.24610 3.61989 3.66712 3.81218 3.95444 3.99800 4.08992 4.17840 4.20619 4.27711 4.39767 4.41813 4.42605 4.49708 4.54306 4.56879 4.59110 4.62727 4.68568 4.70759 4.75100 4.80179 4.82337 4.83301 4.94082 5.32612 5.44161 5.57126 5.59190 5.67221 6.25227 6.31200 6.40808 6.66283 6.71757 7.25327 7.30617 8.85026 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021907 B = 0.002619 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.825063 B =10689.683693 C =11026.659449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.069 3.931 4 C 0.043 3.957 5 N -0.510 5.510 6 C 0.045 3.955 7 C 0.063 3.937 8 N -0.437 5.437 9 C 0.171 3.829 10 N -0.315 5.315 11 N -0.268 5.268 12 C 0.124 3.876 13 C 0.624 3.376 14 O -0.563 6.563 15 N -0.620 5.620 16 C 0.105 3.895 17 C -0.019 4.019 18 C -0.507 4.507 19 H 0.052 0.948 20 C 0.028 3.972 21 N -0.937 5.937 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.285 1.285 25 H -0.248 1.248 26 C 0.128 3.872 27 C 0.145 3.855 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.268 0.732 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.137 0.863 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.267 -16.971 -0.498 32.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.008 4.008 4 C -0.085 4.085 5 N -0.230 5.230 6 C -0.084 4.084 7 C -0.060 4.060 8 N -0.127 5.127 9 C -0.098 4.098 10 N -0.159 5.159 11 N -0.114 5.114 12 C -0.143 4.143 13 C 0.410 3.590 14 O -0.443 6.443 15 N -0.351 5.351 16 C -0.018 4.018 17 C -0.038 4.038 18 C -0.545 4.545 19 H 0.070 0.930 20 C -0.171 4.171 21 N -0.576 5.576 22 Si 0.752 3.248 23 H -0.193 1.193 24 H -0.211 1.211 25 H -0.172 1.172 26 C 0.007 3.993 27 C 0.014 3.986 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.121 0.879 36 H 0.152 0.848 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.155 0.845 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -26.701 -17.650 -0.312 32.009 hybrid contribution -0.092 1.364 0.326 1.406 sum -26.793 -16.286 0.013 31.354 Atomic orbital electron populations 1.22875 0.80121 1.03520 1.00511 1.87944 1.20584 1.27623 1.95472 1.22510 0.91722 0.85268 1.01290 1.22377 0.95277 0.98293 0.92530 1.62491 1.17883 1.38705 1.03971 1.22878 1.03455 0.87211 0.94840 1.23175 0.76903 1.02815 1.03093 1.46093 1.12031 1.08384 1.46231 1.26767 0.94284 0.90446 0.98338 1.74195 1.09465 1.11054 1.21159 1.74980 1.23823 0.98531 1.14116 1.23934 0.86112 0.95440 1.08854 1.15844 0.82702 0.81994 0.78422 1.90750 1.34388 1.69834 1.49311 1.49545 1.09620 1.14612 1.61341 1.23651 0.78968 1.00296 0.98858 1.20807 0.94594 0.92249 0.96171 1.20857 0.94029 1.34689 1.04881 0.92977 1.25706 0.94641 0.95430 1.01325 1.70003 1.03550 1.46096 1.37972 0.86005 0.79419 0.79476 0.79890 1.19272 1.21091 1.17176 1.23181 0.94919 0.80597 1.00614 1.21499 0.81083 0.88192 1.07812 0.93275 0.88973 0.93704 0.91968 0.91871 0.89150 0.93823 0.87867 0.84801 0.87354 0.88058 0.91478 0.89644 0.91238 0.92236 0.88976 0.89930 0.84492 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.46 16 2 O -0.40 -5.45 10.64 -148.98 -1.59 -7.03 16 3 C 0.07 0.73 6.07 71.98 0.44 1.17 16 4 C 0.04 0.56 4.80 86.30 0.41 0.97 16 5 N -0.51 -6.33 4.86 -898.11 -4.37 -10.70 16 6 C 0.04 0.47 5.67 86.44 0.49 0.96 16 7 C 0.06 1.10 5.46 86.58 0.47 1.58 16 8 N -0.44 -11.35 2.95 -506.15 -1.49 -12.84 16 9 C 0.17 4.18 7.36 138.18 1.02 5.20 16 10 N -0.32 -10.44 12.21 -50.34 -0.61 -11.05 16 11 N -0.27 -10.12 10.84 -51.63 -0.56 -10.68 16 12 C 0.12 4.31 7.91 136.38 1.08 5.39 16 13 C 0.62 23.51 8.07 86.67 0.70 24.21 16 14 O -0.56 -21.61 16.37 -4.02 -0.07 -21.68 16 15 N -0.62 -24.25 3.69 -862.66 -3.19 -27.44 16 16 C 0.10 4.35 6.89 83.10 0.57 4.92 16 17 C -0.02 -0.82 2.99 -11.29 -0.03 -0.85 16 18 C -0.51 -26.68 9.38 25.60 0.24 -26.44 16 19 H 0.05 2.99 8.06 -2.91 -0.02 2.96 16 20 C 0.03 1.56 5.47 84.66 0.46 2.03 16 21 N -0.94 -55.65 13.96 21.45 0.30 -55.35 16 22 Si 0.93 42.59 27.42 68.60 1.88 44.47 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.25 -10.67 6.22 99.48 0.62 -10.05 16 26 C 0.13 4.90 8.19 83.19 0.68 5.58 16 27 C 0.14 2.07 6.20 85.50 0.53 2.60 16 28 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.04 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.50 6.70 -2.39 -0.02 0.49 16 33 H 0.09 1.22 7.77 -2.39 -0.02 1.21 16 34 H 0.04 0.69 5.57 -2.39 -0.01 0.67 16 35 H 0.10 0.98 8.08 -2.39 -0.02 0.96 16 36 H 0.13 0.81 6.85 -2.39 -0.02 0.79 16 37 H 0.11 2.07 7.53 -2.39 -0.02 2.05 16 38 H 0.10 1.68 6.76 -2.39 -0.02 1.67 16 39 H 0.07 2.83 7.51 -2.39 -0.02 2.81 16 40 H 0.09 3.60 8.10 -2.39 -0.02 3.58 16 41 H 0.07 3.05 6.50 -2.39 -0.02 3.03 16 42 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.09 3.44 8.10 -2.39 -0.02 3.42 16 44 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 45 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.13 1.59 7.79 -2.39 -0.02 1.57 16 Total: -1.00 -71.27 371.31 -0.47 -71.74 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.91 Total: 11.78 kcal Atomic # 6 Polarization: 20.47 SS G_CDS: 8.31 Total: 28.78 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -9.92 Total: -128.06 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -1.65 Total: -28.71 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.47 kcal Total: -71.27 -0.47 -71.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276896235.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.908 kcal (2) G-P(sol) polarization free energy of solvation -71.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds