Wall clock time and date at job start Tue Mar 31 2020 18:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46908 * 111.00164 * 2 1 4 4 C 1.50700 * 109.46895 * 66.04419 * 3 2 1 5 5 O 1.21299 * 119.99961 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00106 * 180.02562 * 4 3 2 7 7 C 1.37095 * 120.00093 * 180.02562 * 6 4 3 8 8 H 1.08003 * 120.00389 * 359.97438 * 7 6 4 9 9 C 1.38950 * 120.00013 * 180.02562 * 7 6 4 10 10 N 1.31413 * 120.00026 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99825 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46628 * 90.00586 * 11 9 7 13 13 H 1.48501 * 109.47096 * 210.00235 * 11 9 7 14 14 H 1.48491 * 109.47331 * 330.00311 * 11 9 7 15 15 C 1.46900 * 111.00506 * 236.04777 * 2 1 3 16 16 C 1.53044 * 109.45755 * 298.95555 * 15 2 1 17 17 C 1.53193 * 109.31255 * 181.36890 * 16 15 2 18 18 N 1.46928 * 108.77250 * 305.36358 * 17 16 15 19 19 C 1.34775 * 120.62648 * 233.58153 * 18 17 16 20 20 O 1.21570 * 120.00473 * 7.02597 * 19 18 17 21 21 C 1.47710 * 119.99757 * 187.02008 * 19 18 17 22 22 C 1.41507 * 126.51796 * 187.06488 * 21 19 18 23 23 C 1.35365 * 105.50178 * 180.02562 * 22 21 19 24 24 N 1.35032 * 107.22870 * 359.97438 * 23 22 21 25 25 H 0.97000 * 124.88177 * 179.97438 * 24 23 22 26 26 N 1.28466 * 110.23525 * 0.02562 * 24 23 22 27 27 C 1.46925 * 118.73929 * 53.86308 * 18 17 16 28 28 C 1.53046 * 109.44696 * 59.01104 * 15 2 1 29 29 H 1.08999 * 109.47141 * 183.95093 * 1 2 3 30 30 H 1.09002 * 109.47410 * 303.95407 * 1 2 3 31 31 H 1.09004 * 109.46936 * 63.95217 * 1 2 3 32 32 H 1.08990 * 109.47094 * 186.04358 * 3 2 1 33 33 H 1.08999 * 109.47129 * 306.05030 * 3 2 1 34 34 H 0.96996 * 119.99771 * 359.97438 * 6 4 3 35 35 H 0.97000 * 119.99905 * 180.02562 * 10 9 7 36 36 H 1.08994 * 109.46227 * 178.98329 * 15 2 1 37 37 H 1.09003 * 109.49758 * 61.41737 * 16 15 2 38 38 H 1.08998 * 109.49668 * 301.31810 * 16 15 2 39 39 H 1.09000 * 109.58744 * 185.57485 * 17 16 15 40 40 H 1.09003 * 109.70184 * 65.21830 * 17 16 15 41 41 H 1.08000 * 127.24911 * 0.02562 * 22 21 19 42 42 H 1.08002 * 126.37815 * 179.73979 * 23 22 21 43 43 H 1.08997 * 109.58506 * 65.92250 * 27 18 17 44 44 H 1.08997 * 109.58192 * 186.34815 * 27 18 17 45 45 H 1.08995 * 109.49994 * 298.57450 * 28 15 2 46 46 H 1.08998 * 109.49634 * 58.67767 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0053 1.4452 2.1411 6 7 2.0180 3.3202 1.5234 7 6 1.6922 3.9347 2.7048 8 1 1.1299 3.3989 3.4552 9 6 2.0846 5.2474 2.9364 10 7 1.7728 5.8362 4.0691 11 14 3.0567 6.1745 1.6383 12 1 2.1191 6.8778 0.7264 13 1 3.9430 7.1666 2.2983 14 1 3.8805 5.2163 0.8585 15 6 1.9955 -0.7659 -1.1376 16 6 1.5261 -2.2190 -1.0349 17 6 2.1049 -3.0222 -2.2038 18 7 1.7388 -2.3572 -3.4618 19 6 1.1178 -3.0400 -4.4440 20 8 0.7411 -4.1792 -4.2480 21 6 0.8949 -2.4042 -5.7584 22 6 0.1423 -2.9340 -6.8333 23 6 0.2191 -2.0095 -7.8191 24 7 0.9734 -0.9907 -7.3540 25 1 1.1931 -0.1895 -7.8547 26 7 1.3593 -1.2356 -6.1534 27 6 2.0680 -0.9354 -3.6311 28 6 1.4845 -0.1541 -2.4440 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3634 0.5740 0.8524 31 1 -0.3633 0.4513 -0.9233 32 1 3.0796 1.3444 -0.1082 33 1 1.5611 1.9274 -0.8309 34 1 2.5233 3.8014 0.8496 35 1 2.0465 6.7527 4.2307 36 1 3.0849 -0.7344 -1.1235 37 1 0.4373 -2.2531 -1.0738 38 1 1.8706 -2.6469 -0.0935 39 1 1.6952 -4.0322 -2.1916 40 1 3.1906 -3.0673 -2.1169 41 1 -0.3829 -3.8773 -6.8613 42 1 -0.2350 -2.0763 -8.7967 43 1 3.1506 -0.8116 -3.6569 44 1 1.6338 -0.5681 -4.5610 45 1 0.3962 -0.2078 -2.4697 46 1 1.7995 0.8876 -2.5056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331001037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:00 Heat of formation + Delta-G solvation = 41.231696 kcal Electronic energy + Delta-G solvation = -29054.180403 eV Core-core repulsion = 24981.807361 eV Total energy + Delta-G solvation = -4072.373042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.10128 -40.30549 -38.96598 -37.78000 -35.68493 -33.91363 -32.74108 -31.70322 -31.60309 -31.04392 -30.78474 -28.06104 -26.26495 -25.03702 -23.89136 -23.53589 -22.35248 -22.00440 -20.26276 -19.32305 -19.25581 -18.59592 -18.19877 -17.28255 -16.33484 -16.23992 -16.04838 -15.18583 -15.09623 -14.97077 -14.77974 -14.44735 -14.16734 -14.09993 -13.98354 -13.55777 -13.53623 -13.25032 -13.10152 -12.69702 -12.51799 -12.34133 -12.12074 -11.86710 -11.50420 -11.43285 -11.21560 -11.10546 -10.89801 -10.67708 -10.59261 -10.44084 -10.24332 -9.96299 -9.84748 -9.64062 -9.51921 -8.85032 -8.52674 -8.16270 -7.84708 -6.29700 -3.80848 1.16604 1.72093 2.34543 2.82305 3.02728 3.06444 3.11206 3.14948 3.76469 3.93291 3.99243 4.11086 4.38226 4.54641 4.68352 4.80472 4.88882 4.92203 5.05080 5.13521 5.19590 5.21901 5.28198 5.31601 5.45602 5.50790 5.64741 5.69160 5.69735 5.76960 5.81377 5.86975 5.92806 5.96003 6.00984 6.09050 6.21193 6.36282 6.57195 6.58083 7.12237 7.23142 7.37066 7.40796 7.60687 7.93482 8.16681 8.62272 8.97253 9.44340 9.86158 10.83553 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.002414 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.325832 B =11595.285545 C =12637.468975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.510 5.510 3 C 0.042 3.958 4 C 0.454 3.546 5 O -0.558 6.558 6 N -0.593 5.593 7 C -0.303 4.303 8 H 0.119 0.881 9 C 0.040 3.960 10 N -0.882 5.882 11 Si 0.879 3.121 12 H -0.272 1.272 13 H -0.277 1.277 14 H -0.269 1.269 15 C 0.084 3.916 16 C -0.125 4.125 17 C 0.113 3.887 18 N -0.598 5.598 19 C 0.602 3.398 20 O -0.535 6.535 21 C -0.007 4.007 22 C -0.180 4.180 23 C -0.011 4.011 24 N -0.386 5.386 25 H 0.446 0.554 26 N -0.258 5.258 27 C 0.092 3.908 28 C -0.171 4.171 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.017 0.983 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.164 0.836 42 H 0.186 0.814 43 H 0.067 0.933 44 H 0.124 0.876 45 H 0.071 0.929 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 -13.289 -27.515 30.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.232 5.232 3 C -0.089 4.089 4 C 0.239 3.761 5 O -0.440 6.440 6 N -0.233 5.233 7 C -0.432 4.432 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.523 5.523 11 Si 0.706 3.294 12 H -0.197 1.197 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.025 4.025 16 C -0.163 4.163 17 C -0.009 4.009 18 N -0.330 5.330 19 C 0.388 3.612 20 O -0.411 6.411 21 C -0.168 4.168 22 C -0.208 4.208 23 C -0.156 4.156 24 N -0.099 5.099 25 H 0.291 0.709 26 N -0.095 5.095 27 C -0.032 4.032 28 C -0.211 4.211 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.035 0.965 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.202 0.798 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.181 0.819 42 H 0.203 0.797 43 H 0.086 0.914 44 H 0.141 0.859 45 H 0.089 0.911 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.121 -13.496 -25.843 29.176 hybrid contribution 0.225 1.326 -2.280 2.647 sum 1.346 -12.170 -28.123 30.673 Atomic orbital electron populations 1.22605 0.86918 1.02228 1.01333 1.61827 1.08785 1.12350 1.40228 1.21902 1.00712 0.89607 0.96728 1.19677 0.85017 0.82363 0.89024 1.90531 1.42566 1.64060 1.46810 1.42218 1.51056 1.12041 1.17937 1.19424 1.33618 0.96163 0.93956 0.86290 1.25037 0.97939 0.96529 0.96738 1.69623 1.45944 1.13519 1.23178 0.86675 0.80481 0.80531 0.81723 1.19734 1.20210 1.19481 1.21799 0.99659 0.93437 0.87640 1.21971 1.01667 0.94378 0.98296 1.21702 0.99847 0.97583 0.81800 1.47966 1.57866 1.11485 1.15699 1.16983 0.77474 0.84931 0.81795 1.90787 1.51041 1.17938 1.81287 1.22023 1.04073 0.93516 0.97141 1.21823 1.04674 1.02187 0.92089 1.22982 1.00864 0.89995 1.01739 1.43564 1.37330 1.18503 1.10540 0.70919 1.73411 1.21631 1.17300 0.97148 1.22485 1.00671 0.79091 1.00909 1.22754 1.02051 1.00165 0.96131 0.91855 0.88741 0.96469 0.89380 0.93330 0.79787 0.91663 0.89916 0.91136 0.89405 0.88647 0.91077 0.81873 0.79702 0.91440 0.85875 0.91082 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.46 60.06 0.51 0.78 16 2 N -0.51 -8.06 4.49 -236.28 -1.06 -9.12 16 3 C 0.04 0.70 4.89 -4.97 -0.02 0.67 16 4 C 0.45 10.27 7.47 -10.98 -0.08 10.19 16 5 O -0.56 -14.87 13.91 5.54 0.08 -14.79 16 6 N -0.59 -14.09 5.09 -10.96 -0.06 -14.15 16 7 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 8 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 9 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 10 N -0.88 -25.83 13.96 55.50 0.77 -25.06 16 11 Si 0.88 19.31 27.74 -169.99 -4.71 14.59 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 15 C 0.08 1.01 2.19 -67.67 -0.15 0.86 16 16 C -0.12 -1.41 5.11 -26.61 -0.14 -1.54 16 17 C 0.11 1.18 6.44 -3.71 -0.02 1.15 16 18 N -0.60 -6.62 2.97 -173.67 -0.52 -7.14 16 19 C 0.60 7.56 7.69 -12.39 -0.10 7.47 16 20 O -0.54 -8.13 16.36 5.30 0.09 -8.04 16 21 C -0.01 -0.07 6.82 -82.76 -0.56 -0.64 16 22 C -0.18 -1.47 10.81 -39.36 -0.43 -1.89 16 23 C -0.01 -0.05 12.02 -17.17 -0.21 -0.26 16 24 N -0.39 -1.96 6.83 30.47 0.21 -1.76 16 25 H 0.45 0.61 8.96 -190.44 -1.71 -1.09 16 26 N -0.26 -2.22 8.71 33.42 0.29 -1.93 16 27 C 0.09 0.90 6.14 -3.49 -0.02 0.88 16 28 C -0.17 -1.84 4.67 -26.39 -0.12 -1.96 16 29 H 0.06 0.93 6.36 -51.93 -0.33 0.60 16 30 H 0.09 1.86 5.83 -51.93 -0.30 1.56 16 31 H 0.02 0.25 6.31 -51.93 -0.33 -0.08 16 32 H 0.09 1.29 8.00 -51.93 -0.42 0.87 16 33 H 0.05 0.72 6.90 -51.93 -0.36 0.36 16 34 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.08 0.95 8.03 -51.93 -0.42 0.53 16 37 H 0.07 0.87 6.50 -51.93 -0.34 0.53 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.10 1.06 7.00 -51.93 -0.36 0.70 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.19 0.14 8.06 -52.49 -0.42 -0.28 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.12 1.18 4.17 -70.09 -0.29 0.89 16 45 H 0.07 0.85 6.47 -51.93 -0.34 0.51 16 46 H 0.08 0.79 6.69 -51.93 -0.35 0.44 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -36.36 362.37 -8.48 -44.83 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -7.44 Total: 9.11 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -1.59 Total: 7.99 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.36 Total: -59.15 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.16 Total: -22.84 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.59 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.36 -8.48 -44.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331001037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.065 kcal (2) G-P(sol) polarization free energy of solvation -36.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds