Wall clock time and date at job start Tue Mar 31 2020 18:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46908 * 111.00164 * 2 1 4 4 C 1.50700 * 109.46895 * 66.04419 * 3 2 1 5 5 O 1.21299 * 119.99961 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00106 * 180.02562 * 4 3 2 7 7 C 1.37095 * 120.00093 * 180.02562 * 6 4 3 8 8 H 1.08003 * 120.00389 * 359.97438 * 7 6 4 9 9 C 1.38950 * 120.00013 * 180.02562 * 7 6 4 10 10 N 1.31413 * 120.00026 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99825 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46628 * 90.00586 * 11 9 7 13 13 H 1.48501 * 109.47096 * 210.00235 * 11 9 7 14 14 H 1.48491 * 109.47331 * 330.00311 * 11 9 7 15 15 C 1.46900 * 111.00506 * 236.04777 * 2 1 3 16 16 C 1.53044 * 109.45755 * 298.95555 * 15 2 1 17 17 C 1.53193 * 109.31255 * 181.36890 * 16 15 2 18 18 N 1.46928 * 108.77250 * 305.36358 * 17 16 15 19 19 C 1.34775 * 120.62648 * 233.58153 * 18 17 16 20 20 O 1.21570 * 120.00473 * 7.02597 * 19 18 17 21 21 C 1.47710 * 119.99757 * 187.02008 * 19 18 17 22 22 C 1.41507 * 126.51796 * 187.06488 * 21 19 18 23 23 C 1.35365 * 105.50178 * 180.02562 * 22 21 19 24 24 N 1.35032 * 107.22870 * 359.97438 * 23 22 21 25 25 H 0.97000 * 124.88177 * 179.97438 * 24 23 22 26 26 N 1.28466 * 110.23525 * 0.02562 * 24 23 22 27 27 C 1.46925 * 118.73929 * 53.86308 * 18 17 16 28 28 C 1.53046 * 109.44696 * 59.01104 * 15 2 1 29 29 H 1.08999 * 109.47141 * 183.95093 * 1 2 3 30 30 H 1.09002 * 109.47410 * 303.95407 * 1 2 3 31 31 H 1.09004 * 109.46936 * 63.95217 * 1 2 3 32 32 H 1.08990 * 109.47094 * 186.04358 * 3 2 1 33 33 H 1.08999 * 109.47129 * 306.05030 * 3 2 1 34 34 H 0.96996 * 119.99771 * 359.97438 * 6 4 3 35 35 H 0.97000 * 119.99905 * 180.02562 * 10 9 7 36 36 H 1.08994 * 109.46227 * 178.98329 * 15 2 1 37 37 H 1.09003 * 109.49758 * 61.41737 * 16 15 2 38 38 H 1.08998 * 109.49668 * 301.31810 * 16 15 2 39 39 H 1.09000 * 109.58744 * 185.57485 * 17 16 15 40 40 H 1.09003 * 109.70184 * 65.21830 * 17 16 15 41 41 H 1.08000 * 127.24911 * 0.02562 * 22 21 19 42 42 H 1.08002 * 126.37815 * 179.73979 * 23 22 21 43 43 H 1.08997 * 109.58506 * 65.92250 * 27 18 17 44 44 H 1.08997 * 109.58192 * 186.34815 * 27 18 17 45 45 H 1.08995 * 109.49994 * 298.57450 * 28 15 2 46 46 H 1.08998 * 109.49634 * 58.67767 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0053 1.4452 2.1411 6 7 2.0180 3.3202 1.5234 7 6 1.6922 3.9347 2.7048 8 1 1.1299 3.3989 3.4552 9 6 2.0846 5.2474 2.9364 10 7 1.7728 5.8362 4.0691 11 14 3.0567 6.1745 1.6383 12 1 2.1191 6.8778 0.7264 13 1 3.9430 7.1666 2.2983 14 1 3.8805 5.2163 0.8585 15 6 1.9955 -0.7659 -1.1376 16 6 1.5261 -2.2190 -1.0349 17 6 2.1049 -3.0222 -2.2038 18 7 1.7388 -2.3572 -3.4618 19 6 1.1178 -3.0400 -4.4440 20 8 0.7411 -4.1792 -4.2480 21 6 0.8949 -2.4042 -5.7584 22 6 0.1423 -2.9340 -6.8333 23 6 0.2191 -2.0095 -7.8191 24 7 0.9734 -0.9907 -7.3540 25 1 1.1931 -0.1895 -7.8547 26 7 1.3593 -1.2356 -6.1534 27 6 2.0680 -0.9354 -3.6311 28 6 1.4845 -0.1541 -2.4440 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3634 0.5740 0.8524 31 1 -0.3633 0.4513 -0.9233 32 1 3.0796 1.3444 -0.1082 33 1 1.5611 1.9274 -0.8309 34 1 2.5233 3.8014 0.8496 35 1 2.0465 6.7527 4.2307 36 1 3.0849 -0.7344 -1.1235 37 1 0.4373 -2.2531 -1.0738 38 1 1.8706 -2.6469 -0.0935 39 1 1.6952 -4.0322 -2.1916 40 1 3.1906 -3.0673 -2.1169 41 1 -0.3829 -3.8773 -6.8613 42 1 -0.2350 -2.0763 -8.7967 43 1 3.1506 -0.8116 -3.6569 44 1 1.6338 -0.5681 -4.5610 45 1 0.3962 -0.2078 -2.4697 46 1 1.7995 0.8876 -2.5056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331001037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:59 Heat of formation + Delta-G solvation = 11.485778 kcal Electronic energy + Delta-G solvation = -29055.470283 eV Core-core repulsion = 24981.807361 eV Total energy + Delta-G solvation = -4073.662922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.62774 -41.26904 -40.41257 -39.12418 -36.83229 -35.87180 -33.74601 -33.48618 -32.31907 -31.95828 -31.42885 -29.51345 -27.39591 -26.54677 -25.08008 -24.39176 -23.25575 -22.61170 -21.29686 -21.06536 -20.12365 -19.97661 -19.22079 -18.14115 -17.76378 -17.01851 -16.89258 -16.77076 -16.52103 -16.26297 -15.70586 -15.60607 -15.29231 -15.17732 -14.88827 -14.74330 -14.60470 -14.33482 -14.21952 -14.07728 -13.93538 -13.64589 -13.15687 -13.08876 -12.87571 -12.71260 -12.46108 -12.37388 -12.19618 -11.96215 -11.87898 -11.50928 -11.48197 -11.38307 -11.08676 -10.44633 -10.34303 -10.21119 -10.13829 -9.70111 -9.08688 -8.39326 -5.99965 0.48148 1.23898 1.31157 1.36783 1.45910 1.79311 1.99005 2.21681 2.24749 2.31312 2.63443 3.16932 3.26757 3.32571 3.71833 3.91055 3.95101 4.04329 4.12269 4.17400 4.24789 4.29348 4.36921 4.40998 4.49862 4.53156 4.64554 4.69528 4.77552 4.78726 4.81743 4.91992 4.96565 5.03063 5.09314 5.20615 5.32831 5.34837 5.55434 5.60882 5.93142 6.04788 6.16707 6.22738 6.33740 6.62466 6.84373 6.91257 7.10167 7.42673 8.00971 8.78495 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.002414 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.325832 B =11595.285545 C =12637.468975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.531 5.531 3 C 0.054 3.946 4 C 0.451 3.549 5 O -0.607 6.607 6 N -0.593 5.593 7 C -0.326 4.326 8 H 0.053 0.947 9 C -0.018 4.018 10 N -0.937 5.937 11 Si 0.966 3.034 12 H -0.257 1.257 13 H -0.276 1.276 14 H -0.229 1.229 15 C 0.087 3.913 16 C -0.118 4.118 17 C 0.116 3.884 18 N -0.598 5.598 19 C 0.594 3.406 20 O -0.576 6.576 21 C -0.040 4.040 22 C -0.211 4.211 23 C 0.018 3.982 24 N -0.369 5.369 25 H 0.464 0.536 26 N -0.267 5.267 27 C 0.096 3.904 28 C -0.163 4.163 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.033 0.967 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.389 0.611 35 H 0.278 0.722 36 H 0.100 0.900 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.160 0.840 42 H 0.231 0.769 43 H 0.084 0.916 44 H 0.129 0.871 45 H 0.056 0.944 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.113 -12.119 -32.388 34.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.253 5.253 3 C -0.076 4.076 4 C 0.239 3.761 5 O -0.490 6.490 6 N -0.235 5.235 7 C -0.455 4.455 8 H 0.071 0.929 9 C -0.216 4.216 10 N -0.578 5.578 11 Si 0.785 3.215 12 H -0.182 1.182 13 H -0.202 1.202 14 H -0.152 1.152 15 C -0.021 4.021 16 C -0.157 4.157 17 C -0.006 4.006 18 N -0.329 5.329 19 C 0.382 3.618 20 O -0.455 6.455 21 C -0.198 4.198 22 C -0.239 4.239 23 C -0.127 4.127 24 N -0.085 5.085 25 H 0.313 0.687 26 N -0.105 5.105 27 C -0.027 4.027 28 C -0.203 4.203 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.139 0.861 33 H 0.097 0.903 34 H 0.225 0.775 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.178 0.822 42 H 0.248 0.752 43 H 0.103 0.897 44 H 0.146 0.854 45 H 0.075 0.925 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.293 -12.317 -30.743 33.282 hybrid contribution -0.549 0.881 -0.739 1.274 sum 2.744 -11.436 -31.482 33.607 Atomic orbital electron populations 1.22404 0.87660 1.02021 1.00117 1.61751 1.08384 1.12375 1.42828 1.21839 1.02805 0.89733 0.93272 1.20953 0.82856 0.81730 0.90571 1.90525 1.44179 1.65151 1.49192 1.42032 1.51861 1.12655 1.16956 1.18980 1.34647 0.96936 0.94921 0.92856 1.26142 0.98749 0.97011 0.99716 1.69814 1.47469 1.14293 1.26180 0.85354 0.78869 0.79025 0.78202 1.18172 1.20161 1.15184 1.21867 1.00428 0.92851 0.86913 1.21888 1.00713 0.94455 0.98614 1.21673 1.00823 0.96762 0.81340 1.48077 1.57278 1.12100 1.15458 1.17390 0.76919 0.84654 0.82843 1.90749 1.52824 1.19680 1.82208 1.21866 1.06227 0.94838 0.96902 1.22036 1.05692 1.03339 0.92802 1.23545 0.98714 0.88117 1.02295 1.43684 1.36087 1.19106 1.09599 0.68717 1.73264 1.22019 1.16555 0.98660 1.22567 1.01609 0.77898 1.00611 1.22679 1.01129 1.00937 0.95554 0.91204 0.93038 0.94841 0.86062 0.90286 0.77507 0.91224 0.88167 0.92678 0.89693 0.89893 0.89061 0.82233 0.75221 0.89737 0.85378 0.92541 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 8.46 127.69 1.08 1.91 16 2 N -0.53 -15.94 4.49 -901.44 -4.04 -19.98 16 3 C 0.05 1.65 4.89 85.56 0.42 2.07 16 4 C 0.45 20.36 7.47 87.66 0.66 21.02 16 5 O -0.61 -33.79 13.91 -3.09 -0.04 -33.83 16 6 N -0.59 -27.86 5.09 -306.97 -1.56 -29.42 16 7 C -0.33 -19.13 10.16 84.04 0.85 -18.27 16 8 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 9 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 10 N -0.94 -56.77 13.96 21.66 0.30 -56.47 16 11 Si 0.97 38.44 27.74 68.60 1.90 40.35 16 12 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 13 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 14 H -0.23 -7.55 6.52 99.48 0.65 -6.90 16 15 C 0.09 1.88 2.19 44.95 0.10 1.98 16 16 C -0.12 -2.56 5.11 30.67 0.16 -2.40 16 17 C 0.12 2.31 6.44 86.36 0.56 2.87 16 18 N -0.60 -12.51 2.97 -821.63 -2.44 -14.95 16 19 C 0.59 14.87 7.69 86.75 0.67 15.54 16 20 O -0.58 -18.14 16.36 -3.93 -0.06 -18.20 16 21 C -0.04 -0.79 6.82 42.46 0.29 -0.50 16 22 C -0.21 -3.16 10.81 22.41 0.24 -2.91 16 23 C 0.02 0.11 12.02 83.54 1.00 1.12 16 24 N -0.37 -2.43 6.83 -57.51 -0.39 -2.82 16 25 H 0.46 -0.68 8.96 -219.99 -1.97 -2.65 16 26 N -0.27 -3.91 8.71 -48.17 -0.42 -4.33 16 27 C 0.10 1.59 6.14 86.51 0.53 2.12 16 28 C -0.16 -3.00 4.67 30.82 0.14 -2.85 16 29 H 0.07 2.09 6.36 -2.39 -0.02 2.07 16 30 H 0.05 2.11 5.83 -2.39 -0.01 2.09 16 31 H 0.03 0.94 6.31 -2.38 -0.02 0.92 16 32 H 0.12 2.95 8.00 -2.39 -0.02 2.93 16 33 H 0.08 1.98 6.90 -2.39 -0.02 1.96 16 34 H 0.39 14.97 5.76 -92.71 -0.53 14.44 16 35 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.10 1.87 8.03 -2.39 -0.02 1.85 16 37 H 0.05 1.36 6.50 -2.39 -0.02 1.34 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 1.88 7.00 -2.39 -0.02 1.86 16 40 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 41 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 42 H 0.23 -0.86 8.06 -2.91 -0.02 -0.88 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.13 2.09 4.17 -25.88 -0.11 1.99 16 45 H 0.06 1.22 6.47 -2.39 -0.02 1.21 16 46 H 0.09 1.44 6.69 -2.39 -0.02 1.42 16 Total: -1.00 -87.74 362.37 -1.21 -88.95 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: -1.61 Total: 29.56 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: 7.16 Total: 21.15 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -8.55 Total: -127.98 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -0.11 Total: -52.03 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 1.90 Total: 40.35 kcal Total: -87.74 -1.21 -88.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331001037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.432 kcal (2) G-P(sol) polarization free energy of solvation -87.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds