Wall clock time and date at job start Tue Mar 31 2020 18:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 110.99934 * 2 1 4 4 C 1.50702 * 109.47146 * 66.04204 * 3 2 1 5 5 O 1.21295 * 119.99939 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00001 * 179.97438 * 4 3 2 7 7 C 1.37097 * 119.99752 * 180.02562 * 6 4 3 8 8 H 1.07994 * 120.00423 * 0.02562 * 7 6 4 9 9 C 1.38947 * 119.99621 * 180.02562 * 7 6 4 10 10 N 1.31413 * 120.00261 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 120.00198 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46939 * 90.00396 * 11 9 7 13 13 H 1.48504 * 109.47244 * 210.00330 * 11 9 7 14 14 H 1.48497 * 109.47132 * 330.00350 * 11 9 7 15 15 C 1.46897 * 111.00299 * 236.04268 * 2 1 3 16 16 C 1.53045 * 109.46140 * 298.95745 * 15 2 1 17 17 C 1.53185 * 109.31150 * 181.38514 * 16 15 2 18 18 N 1.46930 * 108.77672 * 305.35996 * 17 16 15 19 19 C 1.34771 * 120.63444 * 233.58681 * 18 17 16 20 20 O 1.21608 * 119.99941 * 6.38764 * 19 18 17 21 21 C 1.47430 * 120.00053 * 186.38886 * 19 18 17 22 22 C 1.41290 * 126.41480 * 29.18962 * 21 19 18 23 23 N 1.30443 * 108.02267 * 180.02562 * 22 21 19 24 24 N 1.39932 * 108.89713 * 359.97438 * 23 22 21 25 25 H 0.97004 * 125.75386 * 180.02562 * 24 23 22 26 26 C 1.34259 * 108.49442 * 0.02562 * 24 23 22 27 27 C 1.46929 * 118.73526 * 53.86531 * 18 17 16 28 28 C 1.53043 * 109.45723 * 59.02418 * 15 2 1 29 29 H 1.08992 * 109.46916 * 183.95157 * 1 2 3 30 30 H 1.08999 * 109.47349 * 303.96031 * 1 2 3 31 31 H 1.09001 * 109.46749 * 63.95534 * 1 2 3 32 32 H 1.09004 * 109.47017 * 186.03862 * 3 2 1 33 33 H 1.09001 * 109.47103 * 306.04296 * 3 2 1 34 34 H 0.96993 * 119.99746 * 0.02562 * 6 4 3 35 35 H 0.96998 * 120.00363 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.44684 * 178.98878 * 15 2 1 37 37 H 1.08997 * 109.49343 * 61.43212 * 16 15 2 38 38 H 1.08994 * 109.52158 * 301.35313 * 16 15 2 39 39 H 1.08997 * 109.58623 * 185.57848 * 17 16 15 40 40 H 1.08993 * 109.70826 * 65.22317 * 17 16 15 41 41 H 1.07997 * 125.98955 * 0.03413 * 22 21 19 42 42 H 1.07997 * 126.29492 * 180.26835 * 26 24 23 43 43 H 1.09000 * 109.58611 * 65.92032 * 27 18 17 44 44 H 1.08989 * 109.58730 * 186.34814 * 27 18 17 45 45 H 1.08999 * 109.49541 * 298.56428 * 28 15 2 46 46 H 1.09004 * 109.49693 * 58.66699 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0045 1.4456 2.1407 6 7 2.0188 3.3199 1.5237 7 6 1.6930 3.9344 2.7051 8 1 1.1307 3.3986 3.4554 9 6 2.0863 5.2467 2.9371 10 7 1.7745 5.8357 4.0697 11 14 3.0596 6.1734 1.6396 12 1 2.1230 6.8775 0.7273 13 1 3.9464 7.1648 2.3000 14 1 3.8831 5.2147 0.8599 15 6 1.9956 -0.7660 -1.1375 16 6 1.5261 -2.2191 -1.0348 17 6 2.1053 -3.0224 -2.2034 18 7 1.7394 -2.3576 -3.4616 19 6 1.1187 -3.0405 -4.4439 20 8 0.7521 -4.1839 -4.2516 21 6 0.8841 -2.4012 -5.7515 22 6 1.6775 -1.3956 -6.3479 23 7 1.1448 -1.0908 -7.4989 24 7 0.0024 -1.8756 -7.6915 25 1 -0.5800 -1.8482 -8.4668 26 6 -0.1519 -2.6729 -6.6224 27 6 2.0686 -0.9357 -3.6310 28 6 1.4849 -0.1543 -2.4441 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3634 0.5741 0.8523 31 1 -0.3633 0.4512 -0.9233 32 1 3.0798 1.3444 -0.1081 33 1 1.5612 1.9273 -0.8309 34 1 2.5242 3.8011 0.8499 35 1 2.0494 6.7517 4.2318 36 1 3.0850 -0.7345 -1.1231 37 1 0.4374 -2.2532 -1.0740 38 1 1.8698 -2.6472 -0.0932 39 1 1.6955 -4.0323 -2.1913 40 1 3.1908 -3.0675 -2.1162 41 1 2.5688 -0.9563 -5.9249 42 1 -0.9389 -3.3973 -6.4733 43 1 3.1513 -0.8119 -3.6565 44 1 1.6348 -0.5685 -4.5610 45 1 0.3966 -0.2080 -2.4700 46 1 1.8000 0.8874 -2.5057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331001420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:03 Heat of formation + Delta-G solvation = 35.650825 kcal Electronic energy + Delta-G solvation = -29020.052513 eV Core-core repulsion = 24947.437466 eV Total energy + Delta-G solvation = -4072.615047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.91035 -40.21214 -38.93328 -37.77566 -35.72050 -33.93015 -32.80145 -31.70506 -31.58124 -31.09736 -30.39245 -28.06890 -26.17495 -24.84313 -23.98804 -23.47215 -22.37502 -21.84839 -20.26327 -19.46649 -19.31161 -18.41722 -18.21562 -16.81767 -16.20515 -16.13513 -15.68680 -15.33992 -15.10142 -15.01366 -14.91694 -14.62216 -14.32608 -14.10943 -13.99604 -13.56610 -13.38377 -13.24014 -13.06652 -12.70869 -12.50100 -12.23753 -12.14225 -11.80915 -11.60600 -11.54416 -11.34602 -11.23850 -11.02142 -10.87640 -10.59939 -10.47621 -10.29239 -10.07754 -9.97225 -9.53025 -9.29620 -8.86823 -8.55028 -8.17442 -7.88600 -6.30578 -3.81909 1.12905 1.72217 2.21885 2.71246 3.02161 3.03673 3.06115 3.14781 3.74824 3.90499 4.10074 4.10626 4.32853 4.49112 4.54878 4.74308 4.76757 4.81981 4.86180 4.99004 5.03172 5.15680 5.20367 5.23791 5.34312 5.42938 5.48120 5.60574 5.65460 5.70549 5.76310 5.82582 5.86121 5.91414 5.96937 6.05355 6.15974 6.35210 6.54537 6.57920 6.97461 7.15695 7.20146 7.33589 7.59474 7.97050 8.15532 8.61089 8.96191 9.43236 9.84732 10.82618 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018126 B = 0.002409 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.380299 B =11622.213521 C =12624.796075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.510 5.510 3 C 0.042 3.958 4 C 0.453 3.547 5 O -0.558 6.558 6 N -0.592 5.592 7 C -0.303 4.303 8 H 0.119 0.881 9 C 0.041 3.959 10 N -0.882 5.882 11 Si 0.879 3.121 12 H -0.272 1.272 13 H -0.277 1.277 14 H -0.269 1.269 15 C 0.085 3.915 16 C -0.125 4.125 17 C 0.115 3.885 18 N -0.606 5.606 19 C 0.597 3.403 20 O -0.549 6.549 21 C -0.290 4.290 22 C 0.079 3.921 23 N -0.294 5.294 24 N -0.464 5.464 25 H 0.445 0.555 26 C 0.129 3.871 27 C 0.100 3.900 28 C -0.173 4.173 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.017 0.983 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.196 0.804 42 H 0.191 0.809 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.332 -14.647 -24.728 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.232 5.232 3 C -0.090 4.090 4 C 0.239 3.761 5 O -0.440 6.440 6 N -0.232 5.232 7 C -0.432 4.432 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.522 5.522 11 Si 0.706 3.294 12 H -0.197 1.197 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.025 4.025 16 C -0.164 4.164 17 C -0.008 4.008 18 N -0.338 5.338 19 C 0.385 3.615 20 O -0.427 6.427 21 C -0.305 4.305 22 C -0.109 4.109 23 N -0.115 5.115 24 N -0.169 5.169 25 H 0.290 0.710 26 C -0.023 4.023 27 C -0.023 4.023 28 C -0.213 4.213 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.035 0.965 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.202 0.798 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.212 0.788 42 H 0.207 0.793 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.092 0.908 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.017 -14.953 -24.469 28.676 hybrid contribution 0.209 1.043 -1.323 1.697 sum 0.192 -13.910 -25.792 29.305 Atomic orbital electron populations 1.22607 0.86891 1.02222 1.01365 1.61822 1.08804 1.12400 1.40151 1.21907 1.00721 0.89562 0.96776 1.19669 0.85064 0.82380 0.89027 1.90531 1.42570 1.64071 1.46839 1.42218 1.50995 1.12054 1.17930 1.19419 1.33651 0.96183 0.93957 0.86295 1.25039 0.97919 0.96528 0.96736 1.69620 1.45870 1.13559 1.23181 0.86677 0.80488 0.80538 0.81711 1.19713 1.20205 1.19465 1.21787 0.99690 0.93463 0.87511 1.21972 1.01658 0.94330 0.98395 1.21646 0.99743 0.97580 0.81782 1.47898 1.59121 1.10836 1.15987 1.17261 0.76752 0.84930 0.82508 1.90773 1.51738 1.18028 1.82178 1.20293 1.02563 1.07982 0.99706 1.24310 0.99876 0.94961 0.91711 1.77204 0.98266 1.16864 1.19148 1.46241 1.22751 1.30050 1.17850 0.71006 1.23029 0.98754 0.94031 0.86507 1.22202 1.00328 0.80063 0.99721 1.22764 1.02274 1.00160 0.96060 0.91862 0.88726 0.96453 0.89348 0.93302 0.79775 0.91644 0.89853 0.91178 0.89469 0.88690 0.91199 0.78767 0.79253 0.90919 0.88759 0.90830 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.46 60.07 0.51 0.76 16 2 N -0.51 -7.66 4.49 -236.27 -1.06 -8.72 16 3 C 0.04 0.67 4.89 -4.98 -0.02 0.64 16 4 C 0.45 10.04 7.48 -10.98 -0.08 9.96 16 5 O -0.56 -14.65 13.91 5.54 0.08 -14.57 16 6 N -0.59 -13.86 5.09 -10.96 -0.06 -13.92 16 7 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 10 N -0.88 -25.66 13.96 55.50 0.77 -24.88 16 11 Si 0.88 19.13 27.74 -169.99 -4.71 14.42 16 12 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 13 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 14 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 15 C 0.08 0.93 2.18 -67.67 -0.15 0.78 16 16 C -0.13 -1.29 5.11 -26.61 -0.14 -1.42 16 17 C 0.11 1.06 6.44 -3.71 -0.02 1.04 16 18 N -0.61 -5.61 2.97 -173.77 -0.52 -6.13 16 19 C 0.60 6.47 7.62 -12.52 -0.10 6.37 16 20 O -0.55 -7.71 16.44 5.27 0.09 -7.62 16 21 C -0.29 -2.53 5.54 -105.07 -0.58 -3.11 16 22 C 0.08 0.60 9.58 -16.98 -0.16 0.44 16 23 N -0.29 -2.44 12.63 30.86 0.39 -2.05 16 24 N -0.46 -2.65 7.29 30.85 0.22 -2.43 16 25 H 0.45 1.02 8.96 -182.72 -1.64 -0.62 16 26 C 0.13 0.85 11.93 -16.56 -0.20 0.65 16 27 C 0.10 0.74 5.24 -3.48 -0.02 0.72 16 28 C -0.17 -1.60 4.67 -26.38 -0.12 -1.72 16 29 H 0.06 0.88 6.36 -51.93 -0.33 0.55 16 30 H 0.09 1.81 5.82 -51.93 -0.30 1.51 16 31 H 0.02 0.24 6.31 -51.93 -0.33 -0.09 16 32 H 0.09 1.23 8.00 -51.93 -0.42 0.81 16 33 H 0.05 0.68 6.90 -51.93 -0.36 0.33 16 34 H 0.37 7.56 5.76 -40.82 -0.24 7.33 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.08 0.85 8.03 -51.93 -0.42 0.44 16 37 H 0.07 0.80 6.50 -51.93 -0.34 0.46 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.09 0.98 7.00 -51.93 -0.36 0.62 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.20 1.03 6.44 -52.49 -0.34 0.69 16 42 H 0.19 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.63 4.16 -51.94 -0.22 0.41 16 45 H 0.07 0.78 6.47 -51.93 -0.34 0.44 16 46 H 0.08 0.69 6.69 -51.93 -0.35 0.35 16 LS Contribution 361.62 15.07 5.45 5.45 Total: -1.00 -36.44 361.62 -7.89 -44.32 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.21 Total: 8.65 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -1.33 Total: 7.48 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.24 Total: -58.13 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: 0.16 Total: -22.19 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.44 -7.89 -44.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331001420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.974 kcal (2) G-P(sol) polarization free energy of solvation -36.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds