Wall clock time and date at job start Tue Mar 31 2020 18:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 110.99934 * 2 1 4 4 C 1.50702 * 109.47146 * 66.04204 * 3 2 1 5 5 O 1.21295 * 119.99939 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00001 * 179.97438 * 4 3 2 7 7 C 1.37097 * 119.99752 * 180.02562 * 6 4 3 8 8 H 1.07994 * 120.00423 * 0.02562 * 7 6 4 9 9 C 1.38947 * 119.99621 * 180.02562 * 7 6 4 10 10 N 1.31413 * 120.00261 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 120.00198 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46939 * 90.00396 * 11 9 7 13 13 H 1.48504 * 109.47244 * 210.00330 * 11 9 7 14 14 H 1.48497 * 109.47132 * 330.00350 * 11 9 7 15 15 C 1.46897 * 111.00299 * 236.04268 * 2 1 3 16 16 C 1.53045 * 109.46140 * 298.95745 * 15 2 1 17 17 C 1.53185 * 109.31150 * 181.38514 * 16 15 2 18 18 N 1.46930 * 108.77672 * 305.35996 * 17 16 15 19 19 C 1.34771 * 120.63444 * 233.58681 * 18 17 16 20 20 O 1.21608 * 119.99941 * 6.38764 * 19 18 17 21 21 C 1.47430 * 120.00053 * 186.38886 * 19 18 17 22 22 C 1.41290 * 126.41480 * 29.18962 * 21 19 18 23 23 N 1.30443 * 108.02267 * 180.02562 * 22 21 19 24 24 N 1.39932 * 108.89713 * 359.97438 * 23 22 21 25 25 H 0.97004 * 125.75386 * 180.02562 * 24 23 22 26 26 C 1.34259 * 108.49442 * 0.02562 * 24 23 22 27 27 C 1.46929 * 118.73526 * 53.86531 * 18 17 16 28 28 C 1.53043 * 109.45723 * 59.02418 * 15 2 1 29 29 H 1.08992 * 109.46916 * 183.95157 * 1 2 3 30 30 H 1.08999 * 109.47349 * 303.96031 * 1 2 3 31 31 H 1.09001 * 109.46749 * 63.95534 * 1 2 3 32 32 H 1.09004 * 109.47017 * 186.03862 * 3 2 1 33 33 H 1.09001 * 109.47103 * 306.04296 * 3 2 1 34 34 H 0.96993 * 119.99746 * 0.02562 * 6 4 3 35 35 H 0.96998 * 120.00363 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.44684 * 178.98878 * 15 2 1 37 37 H 1.08997 * 109.49343 * 61.43212 * 16 15 2 38 38 H 1.08994 * 109.52158 * 301.35313 * 16 15 2 39 39 H 1.08997 * 109.58623 * 185.57848 * 17 16 15 40 40 H 1.08993 * 109.70826 * 65.22317 * 17 16 15 41 41 H 1.07997 * 125.98955 * 0.03413 * 22 21 19 42 42 H 1.07997 * 126.29492 * 180.26835 * 26 24 23 43 43 H 1.09000 * 109.58611 * 65.92032 * 27 18 17 44 44 H 1.08989 * 109.58730 * 186.34814 * 27 18 17 45 45 H 1.08999 * 109.49541 * 298.56428 * 28 15 2 46 46 H 1.09004 * 109.49693 * 58.66699 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0045 1.4456 2.1407 6 7 2.0188 3.3199 1.5237 7 6 1.6930 3.9344 2.7051 8 1 1.1307 3.3986 3.4554 9 6 2.0863 5.2467 2.9371 10 7 1.7745 5.8357 4.0697 11 14 3.0596 6.1734 1.6396 12 1 2.1230 6.8775 0.7273 13 1 3.9464 7.1648 2.3000 14 1 3.8831 5.2147 0.8599 15 6 1.9956 -0.7660 -1.1375 16 6 1.5261 -2.2191 -1.0348 17 6 2.1053 -3.0224 -2.2034 18 7 1.7394 -2.3576 -3.4616 19 6 1.1187 -3.0405 -4.4439 20 8 0.7521 -4.1839 -4.2516 21 6 0.8841 -2.4012 -5.7515 22 6 1.6775 -1.3956 -6.3479 23 7 1.1448 -1.0908 -7.4989 24 7 0.0024 -1.8756 -7.6915 25 1 -0.5800 -1.8482 -8.4668 26 6 -0.1519 -2.6729 -6.6224 27 6 2.0686 -0.9357 -3.6310 28 6 1.4849 -0.1543 -2.4441 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3634 0.5741 0.8523 31 1 -0.3633 0.4512 -0.9233 32 1 3.0798 1.3444 -0.1081 33 1 1.5612 1.9273 -0.8309 34 1 2.5242 3.8011 0.8499 35 1 2.0494 6.7517 4.2318 36 1 3.0850 -0.7345 -1.1231 37 1 0.4374 -2.2532 -1.0740 38 1 1.8698 -2.6472 -0.0932 39 1 1.6955 -4.0323 -2.1913 40 1 3.1908 -3.0675 -2.1162 41 1 2.5688 -0.9563 -5.9249 42 1 -0.9389 -3.3973 -6.4733 43 1 3.1513 -0.8119 -3.6565 44 1 1.6348 -0.5685 -4.5610 45 1 0.3966 -0.2080 -2.4700 46 1 1.8000 0.8874 -2.5057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331001420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:02 Heat of formation + Delta-G solvation = 5.343603 kcal Electronic energy + Delta-G solvation = -29021.366733 eV Core-core repulsion = 24947.437466 eV Total energy + Delta-G solvation = -4073.929267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.45898 -41.08199 -40.29339 -39.01574 -36.76809 -35.85051 -33.73095 -33.47068 -32.30094 -31.87627 -31.02101 -29.45688 -27.29800 -26.34720 -24.72127 -24.50542 -23.05418 -22.56828 -21.24506 -20.98697 -20.17022 -20.04057 -19.06495 -17.94997 -17.29868 -16.89051 -16.75264 -16.49054 -16.38042 -16.19487 -15.68361 -15.52625 -15.35364 -15.13688 -15.00228 -14.85911 -14.58469 -14.30813 -14.11491 -14.02809 -13.70906 -13.55434 -13.08023 -12.98291 -12.74962 -12.67800 -12.39147 -12.29262 -12.16874 -12.07216 -11.94818 -11.72762 -11.45599 -11.32390 -10.92424 -10.74936 -10.32289 -10.19561 -9.91579 -9.55878 -9.05096 -8.38099 -5.98703 0.59285 1.14859 1.32451 1.38235 1.47245 1.78607 2.01223 2.05558 2.26053 2.35315 2.67159 3.18468 3.29739 3.53521 3.79985 3.87225 3.93993 4.03755 4.06378 4.15871 4.26353 4.33899 4.38347 4.40782 4.45125 4.52286 4.56846 4.65997 4.67562 4.74347 4.84645 4.87731 4.96711 5.05941 5.14211 5.25279 5.33487 5.38097 5.56878 5.63710 5.95185 6.07978 6.21728 6.27523 6.43319 6.52390 6.64072 6.92951 7.22191 7.44599 8.03161 8.79739 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018126 B = 0.002409 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.380299 B =11622.213521 C =12624.796075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.532 5.532 3 C 0.055 3.945 4 C 0.450 3.550 5 O -0.608 6.608 6 N -0.593 5.593 7 C -0.325 4.325 8 H 0.053 0.947 9 C -0.018 4.018 10 N -0.938 5.938 11 Si 0.965 3.035 12 H -0.258 1.258 13 H -0.277 1.277 14 H -0.227 1.227 15 C 0.087 3.913 16 C -0.119 4.119 17 C 0.120 3.880 18 N -0.604 5.604 19 C 0.594 3.406 20 O -0.592 6.592 21 C -0.317 4.317 22 C 0.084 3.916 23 N -0.320 5.320 24 N -0.451 5.451 25 H 0.459 0.541 26 C 0.139 3.861 27 C 0.103 3.897 28 C -0.167 4.167 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.390 0.610 35 H 0.278 0.722 36 H 0.103 0.897 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.217 0.783 42 H 0.210 0.790 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.057 0.943 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.632 -14.014 -28.968 32.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.255 5.255 3 C -0.076 4.076 4 C 0.238 3.762 5 O -0.491 6.491 6 N -0.236 5.236 7 C -0.454 4.454 8 H 0.071 0.929 9 C -0.216 4.216 10 N -0.579 5.579 11 Si 0.785 3.215 12 H -0.182 1.182 13 H -0.203 1.203 14 H -0.150 1.150 15 C -0.020 4.020 16 C -0.157 4.157 17 C -0.003 4.003 18 N -0.335 5.335 19 C 0.384 3.616 20 O -0.474 6.474 21 C -0.332 4.332 22 C -0.103 4.103 23 N -0.141 5.141 24 N -0.158 5.158 25 H 0.307 0.693 26 C -0.015 4.015 27 C -0.020 4.020 28 C -0.207 4.207 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.141 0.859 33 H 0.098 0.902 34 H 0.225 0.775 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.233 0.767 42 H 0.227 0.773 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.076 0.924 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.288 -14.318 -28.759 32.208 hybrid contribution -0.634 0.715 0.078 0.959 sum 1.654 -13.603 -28.681 31.787 Atomic orbital electron populations 1.22393 0.87740 1.01938 1.00095 1.61738 1.08324 1.12379 1.43073 1.21842 1.02878 0.89737 0.93147 1.21012 0.82799 0.81701 0.90658 1.90525 1.44171 1.65173 1.49280 1.42039 1.51875 1.12723 1.16922 1.18974 1.34588 0.96924 0.94951 0.92900 1.26144 0.98774 0.97029 0.99701 1.69813 1.47501 1.14316 1.26224 0.85358 0.78865 0.79043 0.78202 1.18239 1.20269 1.15007 1.21872 1.00552 0.92725 0.86890 1.21886 1.00640 0.94538 0.98672 1.21576 1.00731 0.96554 0.81419 1.47976 1.58441 1.11645 1.15477 1.17586 0.76138 0.84501 0.83382 1.90747 1.53671 1.19901 1.83061 1.20277 1.04164 1.09335 0.99455 1.24613 1.00160 0.94274 0.91240 1.77166 0.99308 1.17940 1.19692 1.46265 1.22267 1.29173 1.18091 0.69312 1.23380 0.98518 0.93620 0.86009 1.22364 1.02013 0.78344 0.99232 1.22703 1.01343 1.01056 0.95584 0.91262 0.93277 0.94718 0.85917 0.90179 0.77484 0.91257 0.87926 0.92837 0.90162 0.90283 0.89069 0.76700 0.77308 0.88045 0.87709 0.92426 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 8.46 127.69 1.08 1.88 16 2 N -0.53 -14.99 4.49 -901.44 -4.05 -19.04 16 3 C 0.05 1.57 4.89 85.56 0.42 1.99 16 4 C 0.45 19.86 7.48 87.66 0.66 20.52 16 5 O -0.61 -33.32 13.91 -3.08 -0.04 -33.36 16 6 N -0.59 -27.41 5.09 -306.98 -1.56 -28.97 16 7 C -0.33 -18.92 10.16 84.04 0.85 -18.07 16 8 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 9 C -0.02 -1.01 5.50 84.93 0.47 -0.55 16 10 N -0.94 -56.58 13.96 21.66 0.30 -56.28 16 11 Si 0.97 38.09 27.74 68.60 1.90 39.99 16 12 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 13 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 14 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 15 C 0.09 1.63 2.18 44.95 0.10 1.73 16 16 C -0.12 -2.27 5.11 30.67 0.16 -2.12 16 17 C 0.12 2.00 6.44 86.36 0.56 2.55 16 18 N -0.60 -9.72 2.97 -821.96 -2.44 -12.16 16 19 C 0.59 12.01 7.62 86.67 0.66 12.67 16 20 O -0.59 -16.47 16.44 -4.05 -0.07 -16.54 16 21 C -0.32 -4.85 5.54 -20.15 -0.11 -4.96 16 22 C 0.08 1.04 9.58 85.65 0.82 1.86 16 23 N -0.32 -4.48 12.63 -56.28 -0.71 -5.19 16 24 N -0.45 -4.10 7.29 -56.32 -0.41 -4.51 16 25 H 0.46 1.04 8.96 -213.42 -1.91 -0.88 16 26 C 0.14 1.53 11.93 84.28 1.01 2.54 16 27 C 0.10 1.09 5.24 86.51 0.45 1.54 16 28 C -0.17 -2.43 4.67 30.82 0.14 -2.29 16 29 H 0.07 1.97 6.36 -2.39 -0.02 1.95 16 30 H 0.05 1.96 5.82 -2.39 -0.01 1.94 16 31 H 0.03 0.91 6.31 -2.39 -0.02 0.90 16 32 H 0.12 2.76 8.00 -2.38 -0.02 2.74 16 33 H 0.08 1.86 6.90 -2.39 -0.02 1.84 16 34 H 0.39 14.65 5.76 -92.71 -0.53 14.12 16 35 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.10 1.59 8.03 -2.39 -0.02 1.57 16 37 H 0.05 1.20 6.50 -2.39 -0.02 1.18 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 1.61 7.00 -2.39 -0.02 1.59 16 40 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.22 1.42 6.44 -2.91 -0.02 1.40 16 42 H 0.21 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.11 0.96 4.16 -2.39 -0.01 0.95 16 45 H 0.06 1.05 6.47 -2.39 -0.02 1.03 16 46 H 0.09 1.13 6.69 -2.39 -0.02 1.12 16 Total: -1.00 -87.07 361.62 -1.26 -88.34 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: -1.45 Total: 28.43 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 7.26 Total: 19.31 kcal Atomic # 7 Polarization: -117.29 SS G_CDS: -8.86 Total: -126.16 kcal Atomic # 8 Polarization: -49.79 SS G_CDS: -0.11 Total: -49.90 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 1.90 Total: 39.99 kcal Total: -87.07 -1.26 -88.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331001420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.680 kcal (2) G-P(sol) polarization free energy of solvation -87.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds