Wall clock time and date at job start Tue Mar 31 2020 18:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50696 * 119.99795 * 2 1 4 4 N 1.46506 * 109.47200 * 123.02995 * 3 2 1 5 5 C 1.36736 * 127.13563 * 85.70720 * 4 3 2 6 6 C 1.50701 * 126.35044 * 359.97438 * 5 4 3 7 7 H 1.09004 * 110.88858 * 12.55738 * 6 5 4 8 8 C 1.54771 * 111.01287 * 248.61748 * 6 5 4 9 9 C 1.51677 * 102.47808 * 217.98684 * 8 6 5 10 10 N 1.27651 * 108.46278 * 15.28204 * 9 8 6 11 11 O 1.41385 * 113.16980 * 0.31816 * 10 9 8 12 12 N 1.30294 * 107.30236 * 180.26643 * 5 4 3 13 13 N 1.28524 * 110.05378 * 359.55080 * 12 5 4 14 14 C 1.31218 * 109.86109 * 0.46186 * 13 12 5 15 15 N 1.38576 * 126.47539 * 179.72796 * 14 13 12 16 16 C 1.46902 * 110.99989 * 294.46901 * 15 14 13 17 17 C 1.50704 * 109.47202 * 195.08813 * 16 15 14 18 18 H 1.07999 * 119.99776 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00204 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99692 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00237 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47190 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47444 * 119.99896 * 21 19 17 24 24 H 1.48496 * 109.47072 * 240.00060 * 21 19 17 25 25 C 1.46907 * 111.00079 * 58.42431 * 15 14 13 26 26 C 1.52994 * 109.47167 * 70.00109 * 25 15 14 27 27 O 1.42890 * 109.47615 * 65.00236 * 26 25 15 28 28 C 1.42900 * 114.00535 * 180.02562 * 27 26 25 29 29 H 1.08002 * 119.99937 * 0.02562 * 1 2 3 30 30 H 1.07996 * 119.99684 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.99706 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47654 * 3.02740 * 3 2 1 33 33 H 1.09005 * 109.46847 * 243.02829 * 3 2 1 34 34 H 1.09003 * 110.80582 * 336.23561 * 8 6 5 35 35 H 1.09003 * 110.80627 * 99.54512 * 8 6 5 36 36 H 1.07998 * 125.77046 * 195.25832 * 9 8 6 37 37 H 1.09002 * 109.46746 * 315.08608 * 16 15 14 38 38 H 1.09000 * 109.47029 * 75.08976 * 16 15 14 39 39 H 0.96999 * 119.99962 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.47121 * 190.00463 * 25 15 14 41 41 H 1.08998 * 109.46704 * 309.99645 * 25 15 14 42 42 H 1.08999 * 109.46694 * 185.00532 * 26 25 15 43 43 H 1.09002 * 109.46840 * 304.99808 * 26 25 15 44 44 H 1.08992 * 109.47312 * 180.02562 * 28 27 26 45 45 H 1.09007 * 109.46398 * 299.99779 * 28 27 26 46 46 H 1.08995 * 109.47001 * 59.99745 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9597 1.3516 1.1580 5 6 4.2283 0.8482 1.2408 6 6 4.9783 0.1320 0.1473 7 1 4.4720 0.2475 -0.8111 8 6 5.1740 -1.3632 0.4959 9 6 6.5699 -1.6418 -0.0279 10 7 7.1511 -0.5259 -0.2431 11 8 6.3434 0.5915 0.0698 12 7 4.6663 1.0968 2.4425 13 7 3.7711 1.7266 3.1163 14 6 2.7016 1.9064 2.3776 15 7 1.5311 2.5400 2.7633 16 6 0.8487 1.7857 3.8233 17 6 -0.5685 2.2798 3.9588 18 1 -0.9264 3.0750 3.3215 19 6 -1.4082 1.7169 4.8962 20 7 -0.9722 0.7489 5.6725 21 14 -3.1651 2.3288 5.0637 22 1 -3.4063 3.4164 4.0817 23 1 -4.1061 1.2096 4.8044 24 1 -3.3797 2.8474 6.4385 25 6 1.7953 3.9216 3.1869 26 6 2.1788 4.7640 1.9687 27 8 1.0647 4.8483 1.0779 28 6 1.3186 5.6173 -0.0995 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3565 2.1329 0.0543 33 1 2.6488 1.3867 -0.9159 34 1 5.1265 -1.5189 1.5737 35 1 4.4350 -1.9799 -0.0157 36 1 6.9997 -2.6191 -0.1908 37 1 0.8412 0.7261 3.5679 38 1 1.3750 1.9284 4.7671 39 1 -1.5628 0.3531 6.3323 40 1 0.8999 4.3375 3.6490 41 1 2.6133 3.9306 3.9071 42 1 2.4607 5.7655 2.2938 43 1 3.0201 4.2984 1.4553 44 1 0.4247 5.6333 -0.7228 45 1 1.5829 6.6366 0.1824 46 1 2.1419 5.1691 -0.6556 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340539908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:55 Heat of formation + Delta-G solvation = 80.335027 kcal Electronic energy + Delta-G solvation = -30357.254885 eV Core-core repulsion = 26286.577491 eV Total energy + Delta-G solvation = -4070.677395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.15294 -41.04178 -39.37544 -37.87317 -37.19395 -34.79305 -34.07042 -33.76470 -32.87121 -31.22060 -30.10832 -28.32546 -27.74334 -27.00139 -25.35858 -24.41199 -24.00707 -22.40643 -22.17736 -21.35507 -20.82814 -18.85489 -18.31142 -17.90427 -17.67328 -17.40094 -17.17372 -16.77950 -16.68629 -16.36753 -16.13399 -15.82755 -15.59854 -15.24893 -14.60464 -14.54420 -14.23635 -14.03688 -13.98503 -13.82856 -13.63424 -13.37126 -13.13647 -12.97080 -12.75944 -12.72170 -12.61850 -12.51976 -12.47623 -12.10187 -11.90554 -11.79141 -11.76339 -11.42413 -11.14144 -10.74670 -10.66539 -10.61070 -10.50708 -10.14099 -9.60953 -8.21349 -6.32556 0.51348 0.83939 0.94495 1.43413 1.44228 1.48657 1.59134 1.63073 2.12509 2.41218 2.80859 2.92106 3.06054 3.13074 3.27558 3.43819 3.56627 3.69271 3.78683 3.88505 3.90637 4.05137 4.14571 4.22021 4.28804 4.43834 4.50820 4.54307 4.56510 4.62440 4.69432 4.72194 4.82372 4.85615 4.87789 4.96410 5.03189 5.10457 5.11024 5.50575 5.58906 5.67899 5.74449 5.89165 5.98491 6.26622 6.31662 6.51713 6.81594 7.36979 7.59556 8.90473 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012003 B = 0.003962 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.244244 B = 7065.748997 C = 7832.987967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.199 4.199 3 C 0.135 3.865 4 N -0.447 5.447 5 C 0.170 3.830 6 C 0.138 3.862 7 H 0.134 0.866 8 C -0.151 4.151 9 C 0.106 3.894 10 N -0.327 5.327 11 O -0.229 6.229 12 N -0.304 5.304 13 N -0.359 5.359 14 C 0.371 3.629 15 N -0.448 5.448 16 C 0.236 3.764 17 C -0.514 4.514 18 H 0.073 0.927 19 C 0.008 3.992 20 N -0.934 5.934 21 Si 0.971 3.029 22 H -0.259 1.259 23 H -0.278 1.278 24 H -0.282 1.282 25 C 0.069 3.931 26 C 0.083 3.917 27 O -0.393 6.393 28 C 0.025 3.975 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.151 0.849 36 H 0.257 0.743 37 H -0.005 1.005 38 H -0.029 1.029 39 H 0.265 0.735 40 H 0.095 0.905 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.028 0.972 44 H 0.099 0.901 45 H 0.050 0.950 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.669 -2.559 -18.834 20.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.218 4.218 3 C 0.014 3.986 4 N -0.139 5.139 5 C -0.099 4.099 6 C 0.076 3.924 7 H 0.151 0.849 8 C -0.191 4.191 9 C -0.107 4.107 10 N -0.071 5.071 11 O -0.241 6.241 12 N -0.145 5.145 13 N -0.203 5.203 14 C 0.014 3.986 15 N -0.174 5.174 16 C 0.111 3.889 17 C -0.552 4.552 18 H 0.091 0.909 19 C -0.191 4.191 20 N -0.574 5.574 21 Si 0.796 3.204 22 H -0.183 1.183 23 H -0.204 1.204 24 H -0.207 1.207 25 C -0.058 4.058 26 C 0.006 3.994 27 O -0.312 6.312 28 C -0.071 4.071 29 H 0.115 0.885 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.121 0.879 33 H 0.146 0.854 34 H 0.112 0.888 35 H 0.169 0.831 36 H 0.273 0.727 37 H 0.013 0.987 38 H -0.012 1.012 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.046 0.954 44 H 0.118 0.882 45 H 0.069 0.931 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.002 -1.896 -18.204 19.975 hybrid contribution -1.738 -0.104 0.728 1.888 sum 6.263 -2.000 -17.476 18.672 Atomic orbital electron populations 1.24140 0.95926 1.03099 0.94506 1.22981 0.96463 0.97337 1.04994 1.21274 0.92798 0.98966 0.85531 1.46465 1.12971 1.41932 1.12557 1.24497 0.84681 1.03587 0.97143 1.21781 0.84261 0.92711 0.93621 0.84869 1.23373 0.97863 0.92920 1.04913 1.28604 0.93336 0.99440 0.89304 1.77996 1.17443 0.96124 1.15545 1.91363 1.14914 1.27030 1.90787 1.73866 1.23552 1.14429 1.02692 1.74636 1.00546 1.18736 1.26415 1.22809 0.93406 0.98060 0.84335 1.59051 1.13649 1.02437 1.42251 1.19289 0.93226 0.91325 0.85064 1.21308 0.95426 1.19858 1.18629 0.90894 1.25874 1.03348 0.94929 0.94910 1.70126 1.37988 1.26658 1.22635 0.85300 0.78569 0.78491 0.78070 1.18271 1.20376 1.20742 1.22169 1.01941 0.85901 0.95770 1.22374 0.88150 0.98706 0.90173 1.88025 1.36529 1.73525 1.33093 1.22920 1.02503 0.94787 0.86918 0.88463 0.86584 0.85484 0.87936 0.85380 0.88773 0.83069 0.72721 0.98657 1.01157 0.92636 0.88631 0.93396 0.90581 0.95409 0.88248 0.93139 0.94025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 14.32 67.77 0.97 -2.44 16 2 C -0.20 -4.63 9.85 25.64 0.25 -4.38 16 3 C 0.13 3.36 6.35 85.63 0.54 3.90 16 4 N -0.45 -14.99 2.79 -518.91 -1.45 -16.44 16 5 C 0.17 5.65 6.99 137.64 0.96 6.62 16 6 C 0.14 3.19 4.23 30.45 0.13 3.32 16 7 H 0.13 2.16 7.15 -2.39 -0.02 2.15 16 8 C -0.15 -2.37 6.63 30.76 0.20 -2.16 16 9 C 0.11 1.36 12.32 89.03 1.10 2.46 16 10 N -0.33 -7.55 12.45 -49.85 -0.62 -8.17 16 11 O -0.23 -6.77 12.23 -38.30 -0.47 -7.24 16 12 N -0.30 -12.88 12.18 -49.54 -0.60 -13.49 16 13 N -0.36 -16.83 11.94 -58.01 -0.69 -17.52 16 14 C 0.37 15.77 5.37 260.12 1.40 17.16 16 15 N -0.45 -19.94 4.40 -710.35 -3.12 -23.06 16 16 C 0.24 12.81 4.67 85.56 0.40 13.21 16 17 C -0.51 -28.25 8.38 25.60 0.21 -28.04 16 18 H 0.07 3.92 7.57 -2.91 -0.02 3.90 16 19 C 0.01 0.44 5.46 84.65 0.46 0.90 16 20 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 21 Si 0.97 43.15 29.54 68.60 2.03 45.18 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 C 0.07 2.82 5.17 86.30 0.45 3.26 16 26 C 0.08 2.70 6.06 71.98 0.44 3.14 16 27 O -0.39 -12.51 10.65 -148.98 -1.59 -14.10 16 28 C 0.02 0.54 11.01 113.37 1.25 1.79 16 29 H 0.10 2.60 7.84 -2.91 -0.02 2.57 16 30 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.10 2.89 7.77 -2.39 -0.02 2.87 16 33 H 0.13 2.15 7.34 -2.38 -0.02 2.14 16 34 H 0.09 1.98 7.90 -2.39 -0.02 1.96 16 35 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.26 0.33 8.06 -2.91 -0.02 0.30 16 37 H 0.00 -0.28 7.98 -2.39 -0.02 -0.30 16 38 H -0.03 -1.80 8.06 -2.39 -0.02 -1.82 16 39 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.10 4.08 7.00 -2.39 -0.02 4.06 16 41 H 0.05 2.03 7.82 -2.39 -0.02 2.01 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.03 0.94 7.39 -2.39 -0.02 0.92 16 44 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -81.93 394.60 3.50 -78.42 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.97 Total: 13.21 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 8.76 Total: 18.73 kcal Atomic # 7 Polarization: -128.00 SS G_CDS: -6.20 Total: -134.20 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -2.05 Total: -21.34 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -81.93 3.50 -78.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340539908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.759 kcal (2) G-P(sol) polarization free energy of solvation -81.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds