Wall clock time and date at job start Tue Mar 31 2020 18:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34772 * 120.00213 * 2 1 4 4 O 1.21284 * 119.99792 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00449 * 179.97438 * 3 2 1 6 6 C 1.53039 * 109.46683 * 180.02562 * 5 3 2 7 7 C 1.53189 * 109.31650 * 178.63159 * 6 5 3 8 8 N 1.46929 * 108.77740 * 54.63239 * 7 6 5 9 9 C 1.34776 * 120.63039 * 126.37155 * 8 7 6 10 10 O 1.21584 * 120.00308 * 185.22772 * 9 8 7 11 11 N 1.34782 * 119.99884 * 5.22197 * 9 8 7 12 12 C 1.40191 * 119.99733 * 174.86768 * 11 9 8 13 13 C 1.40397 * 125.97305 * 0.02623 * 12 11 9 14 14 C 1.35250 * 107.86553 * 179.73492 * 13 12 11 15 15 N 1.34960 * 107.86002 * 0.36053 * 14 13 12 16 16 C 1.46500 * 125.97692 * 179.89776 * 15 14 13 17 17 C 1.50701 * 109.47325 * 124.71725 * 16 15 14 18 18 H 1.07999 * 119.99376 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00134 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00279 * 359.72803 * 19 17 16 21 21 Si 1.86804 * 119.99974 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47321 * 179.72767 * 21 19 17 23 23 H 1.48504 * 109.47032 * 299.73038 * 21 19 17 24 24 H 1.48501 * 109.46921 * 59.72565 * 21 19 17 25 25 N 1.31214 * 125.96902 * 179.97438 * 12 11 9 26 26 C 1.46916 * 118.73681 * 306.64491 * 8 7 6 27 27 C 1.52763 * 109.01040 * 53.31041 * 26 8 7 28 28 H 1.08996 * 109.47317 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47051 * 299.99952 * 1 2 3 30 30 H 1.09004 * 109.46962 * 59.99639 * 1 2 3 31 31 H 0.97004 * 119.99886 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46032 * 299.97648 * 5 3 2 33 33 H 1.08997 * 109.49944 * 58.67272 * 6 5 3 34 34 H 1.09004 * 109.52008 * 298.59766 * 6 5 3 35 35 H 1.09003 * 109.58151 * 294.84474 * 7 6 5 36 36 H 1.08999 * 109.70555 * 174.49083 * 7 6 5 37 37 H 0.96995 * 119.99813 * 354.87607 * 11 9 8 38 38 H 1.07999 * 126.06857 * 359.95711 * 13 12 11 39 39 H 1.08003 * 126.06861 * 180.25624 * 14 13 12 40 40 H 1.09000 * 109.47282 * 4.71792 * 16 15 14 41 41 H 1.09002 * 109.46941 * 244.71518 * 16 15 14 42 42 H 0.96999 * 119.99342 * 0.27196 * 20 19 17 43 43 H 1.09002 * 109.59013 * 173.14392 * 26 8 7 44 44 H 1.09004 * 109.59103 * 293.56480 * 26 8 7 45 45 H 1.09002 * 109.56770 * 185.55198 * 27 26 8 46 46 H 1.08996 * 109.38731 * 65.51108 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1558 2.6101 0.0011 7 6 5.6873 2.6063 0.0362 8 7 6.1839 1.7912 -1.0808 9 6 7.0776 2.2954 -1.9546 10 8 7.4091 1.6463 -2.9278 11 7 7.6037 3.5193 -1.7497 12 6 8.6117 3.9998 -2.5974 13 6 9.1637 3.3161 -3.6924 14 6 10.0989 4.1166 -4.2526 15 7 10.1464 5.2606 -3.5381 16 6 11.0260 6.4026 -3.7994 17 6 10.1964 7.6517 -3.9498 18 1 9.1215 7.6000 -3.8592 19 6 10.8098 8.8604 -4.2018 20 7 12.1192 8.9244 -4.3057 21 14 9.7813 10.4086 -4.3888 22 1 10.6734 11.5675 -4.6464 23 1 8.8419 10.2443 -5.5272 24 1 9.0108 10.6447 -3.1415 25 7 9.2033 5.1674 -2.5066 26 6 5.6832 0.4181 -1.2306 27 6 4.1559 0.4446 -1.2484 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9500 -0.8401 0.0004 32 1 4.0086 0.6539 0.8911 33 1 3.7730 3.1310 0.8787 34 1 3.8138 3.1176 -0.9010 35 1 6.0300 2.1811 0.9796 36 1 6.0597 3.6260 -0.0617 37 1 7.2851 4.0674 -1.0157 38 1 8.8878 2.3280 -4.0299 39 1 10.7020 3.8813 -5.1172 40 1 11.5872 6.2265 -4.7172 41 1 11.7194 6.5249 -2.9673 42 1 12.6532 8.1204 -4.2089 43 1 6.0508 -0.0050 -2.1655 44 1 6.0257 -0.1892 -0.3927 45 1 3.7732 -0.5760 -1.2599 46 1 3.8135 0.9716 -2.1389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365124142.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:31 Heat of formation + Delta-G solvation = -4.731887 kcal Electronic energy + Delta-G solvation = -28368.539013 eV Core-core repulsion = 24294.172840 eV Total energy + Delta-G solvation = -4074.366173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.38439 -41.53528 -40.70622 -38.31849 -36.45643 -35.69456 -35.58535 -34.12235 -32.60936 -31.97337 -30.98797 -28.72219 -28.02929 -26.32931 -25.14956 -24.30759 -23.31406 -22.38101 -21.87130 -21.12508 -20.36960 -19.38292 -19.19102 -18.24437 -18.14535 -17.14306 -16.93580 -16.87639 -16.42641 -15.98378 -15.91351 -15.61078 -15.47949 -15.19465 -15.05436 -14.81319 -14.51695 -14.40455 -14.06304 -13.86567 -13.72978 -13.53524 -13.31951 -13.24869 -13.09246 -13.00137 -12.62077 -12.29219 -12.02241 -11.95981 -11.78749 -11.68581 -11.66385 -11.08625 -11.00621 -10.87623 -10.69476 -10.12812 -9.91292 -9.72901 -9.12531 -8.76550 -6.55455 0.97712 1.07432 1.50461 1.56805 1.60165 1.63291 1.78320 1.95127 2.27183 2.35461 2.47912 2.76374 3.01075 3.54316 3.69627 3.76705 3.86907 3.99345 4.11653 4.19433 4.30876 4.39308 4.44964 4.55816 4.60251 4.62495 4.64212 4.71756 4.78476 4.79896 4.85305 4.86546 4.94386 4.97180 5.10114 5.11983 5.28130 5.45540 5.51219 5.56535 5.72613 5.84440 5.95150 6.27835 6.42397 6.54372 6.56013 7.02466 7.19901 7.27181 7.34392 8.58517 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017959 B = 0.002159 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.728615 B =12965.895535 C =14097.531533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.722 5.722 3 C 0.511 3.489 4 O -0.590 6.590 5 C -0.098 4.098 6 C -0.112 4.112 7 C 0.107 3.893 8 N -0.617 5.617 9 C 0.712 3.288 10 O -0.598 6.598 11 N -0.640 5.640 12 C 0.286 3.714 13 C -0.289 4.289 14 C 0.056 3.944 15 N -0.344 5.344 16 C 0.260 3.740 17 C -0.621 4.621 18 H 0.043 0.957 19 C -0.019 4.019 20 N -0.922 5.922 21 Si 1.119 2.881 22 H -0.274 1.274 23 H -0.272 1.272 24 H -0.276 1.276 25 N -0.349 5.349 26 C 0.127 3.873 27 C -0.117 4.117 28 H 0.111 0.889 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.420 0.580 32 H 0.139 0.861 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.417 0.583 38 H 0.169 0.831 39 H 0.202 0.798 40 H 0.055 0.945 41 H 0.017 0.983 42 H 0.261 0.739 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.117 0.883 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.588 -24.919 12.002 33.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.374 5.374 3 C 0.298 3.702 4 O -0.470 6.470 5 C -0.119 4.119 6 C -0.151 4.151 7 C -0.015 4.015 8 N -0.355 5.355 9 C 0.414 3.586 10 O -0.477 6.477 11 N -0.294 5.294 12 C 0.030 3.970 13 C -0.320 4.320 14 C -0.092 4.092 15 N -0.126 5.126 16 C 0.140 3.860 17 C -0.659 4.659 18 H 0.062 0.938 19 C -0.219 4.219 20 N -0.558 5.558 21 Si 0.940 3.060 22 H -0.199 1.199 23 H -0.198 1.198 24 H -0.201 1.201 25 N -0.180 5.180 26 C 0.006 3.994 27 C -0.155 4.155 28 H 0.129 0.871 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.258 0.742 32 H 0.157 0.843 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.256 0.744 38 H 0.187 0.813 39 H 0.219 0.781 40 H 0.072 0.928 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.123 0.877 45 H 0.135 0.865 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.566 -21.903 11.683 31.608 hybrid contribution 0.012 -2.004 0.010 2.004 sum -19.555 -23.907 11.693 33.025 Atomic orbital electron populations 1.21641 0.79337 1.04142 1.01087 1.45758 1.08139 1.08855 1.74636 1.21110 0.90985 0.83488 0.74586 1.90716 1.71531 1.33370 1.51373 1.21335 0.89808 0.98356 1.02358 1.21675 0.94192 0.96026 1.03237 1.21933 0.93812 0.95616 0.90124 1.47366 1.43599 1.16058 1.28437 1.15727 0.79907 0.80102 0.82904 1.90814 1.65510 1.60800 1.30539 1.41666 1.37484 1.17598 1.32635 1.19121 0.92278 0.92227 0.93338 1.21692 1.04782 1.04497 1.01054 1.23172 1.00624 0.86306 0.99105 1.48545 1.28800 1.14187 1.21067 1.19419 0.88100 0.82211 0.96238 1.22281 0.94751 0.94334 1.54546 0.93827 1.27252 0.97589 1.04696 0.92334 1.70945 1.05566 1.32189 1.47129 0.82888 0.73723 0.71770 0.77624 1.19868 1.19771 1.20132 1.77262 1.08983 1.18173 1.13583 1.21643 0.93046 0.80130 1.04599 1.21842 0.95196 1.02451 0.96024 0.87068 0.93311 0.93877 0.74237 0.84327 0.89348 0.93589 0.87246 0.90427 0.74364 0.81340 0.78106 0.92753 0.96474 0.92941 0.89798 0.87651 0.86456 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.70 127.77 1.37 2.00 16 2 N -0.72 -5.49 5.60 -484.53 -2.71 -8.20 16 3 C 0.51 7.56 7.15 87.66 0.63 8.19 16 4 O -0.59 -15.13 15.98 -3.04 -0.05 -15.18 16 5 C -0.10 -0.91 2.49 -11.51 -0.03 -0.94 16 6 C -0.11 -1.63 4.65 30.67 0.14 -1.48 16 7 C 0.11 1.43 6.39 86.36 0.55 1.98 16 8 N -0.62 -11.56 2.98 -837.75 -2.49 -14.05 16 9 C 0.71 20.82 8.26 179.05 1.48 22.30 16 10 O -0.60 -21.19 12.91 -3.98 -0.05 -21.24 16 11 N -0.64 -20.54 5.36 -321.23 -1.72 -22.27 16 12 C 0.29 11.86 8.11 133.31 1.08 12.94 16 13 C -0.29 -11.65 9.61 22.11 0.21 -11.44 16 14 C 0.06 2.26 11.44 83.52 0.96 3.22 16 15 N -0.34 -16.56 3.67 -351.83 -1.29 -17.85 16 16 C 0.26 13.58 5.57 85.63 0.48 14.06 16 17 C -0.62 -35.98 9.24 25.60 0.24 -35.75 16 18 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 19 C -0.02 -1.08 5.46 84.65 0.46 -0.62 16 20 N -0.92 -54.43 13.65 21.44 0.29 -54.14 16 21 Si 1.12 50.64 29.90 68.60 2.05 52.69 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 24 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 25 N -0.35 -16.78 12.42 -54.44 -0.68 -17.45 16 26 C 0.13 1.57 6.41 86.22 0.55 2.12 16 27 C -0.12 -1.04 5.25 30.53 0.16 -0.88 16 28 H 0.11 0.05 8.14 -2.39 -0.02 0.04 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.04 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.42 -0.01 8.23 -92.71 -0.76 -0.77 16 32 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.09 1.26 8.07 -2.39 -0.02 1.24 16 34 H 0.05 0.97 8.13 -2.38 -0.02 0.95 16 35 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 1.14 5.64 -2.39 -0.01 1.13 16 37 H 0.42 11.20 6.31 -92.71 -0.59 10.62 16 38 H 0.17 6.57 5.93 -2.91 -0.02 6.55 16 39 H 0.20 6.38 8.06 -2.91 -0.02 6.35 16 40 H 0.05 2.72 7.94 -2.39 -0.02 2.70 16 41 H 0.02 0.95 8.00 -2.39 -0.02 0.93 16 42 H 0.26 15.22 7.22 -92.71 -0.67 14.55 16 43 H 0.08 1.41 7.00 -2.39 -0.02 1.40 16 44 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.12 0.21 7.52 -2.39 -0.02 0.19 16 46 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -85.00 377.37 1.40 -83.60 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -0.22 Total: 18.38 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 8.28 Total: 15.71 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -8.60 Total: -133.97 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.10 Total: -36.41 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Total: -85.00 1.40 -83.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365124142.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.867 kcal (2) G-P(sol) polarization free energy of solvation -85.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds