Wall clock time and date at job start Tue Mar 31 2020 18:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35297 * 116.99742 * 2 1 4 4 N 1.32464 * 119.02069 * 179.97438 * 3 2 1 5 5 C 1.32011 * 120.91935 * 179.97438 * 4 3 2 6 6 C 1.40056 * 118.98681 * 0.02562 * 5 4 3 7 7 C 1.47627 * 120.88550 * 179.97438 * 6 5 4 8 8 O 1.21578 * 120.00143 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00181 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00029 * 180.27690 * 9 7 6 11 11 C 1.53006 * 109.46937 * 179.72264 * 10 9 7 12 12 N 1.46900 * 109.46674 * 180.02562 * 11 10 9 13 13 C 1.46908 * 110.99843 * 294.29833 * 12 11 10 14 14 C 1.53235 * 109.33753 * 172.74909 * 13 12 11 15 15 N 1.47085 * 108.52242 * 53.83486 * 14 13 12 16 16 C 1.36932 * 120.88250 * 128.83527 * 15 14 13 17 17 H 1.07997 * 119.99773 * 206.55978 * 16 15 14 18 18 C 1.38810 * 120.00008 * 26.56319 * 16 15 14 19 19 N 1.31613 * 120.00409 * 17.01550 * 18 16 15 20 20 Si 1.86809 * 119.99710 * 197.01597 * 18 16 15 21 21 H 1.48499 * 109.46875 * 89.99800 * 20 18 16 22 22 H 1.48502 * 109.46936 * 209.99861 * 20 18 16 23 23 H 1.48501 * 109.47098 * 329.99904 * 20 18 16 24 24 C 1.47084 * 118.23086 * 308.80977 * 15 14 13 25 25 C 1.46900 * 110.99700 * 170.00297 * 12 11 10 26 26 C 1.40058 * 118.23489 * 0.25072 * 6 5 4 27 27 N 1.32014 * 118.98636 * 359.48846 * 26 6 5 28 28 H 1.08999 * 109.47262 * 60.00585 * 1 2 3 29 29 H 1.08995 * 109.46934 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47433 * 300.00399 * 1 2 3 31 31 H 1.07994 * 120.51158 * 179.97438 * 5 4 3 32 32 H 0.97004 * 120.00032 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.46767 * 299.72142 * 10 9 7 34 34 H 1.08999 * 109.47195 * 59.72193 * 10 9 7 35 35 H 1.09003 * 109.46816 * 299.99780 * 11 10 9 36 36 H 1.08999 * 109.47235 * 59.99954 * 11 10 9 37 37 H 1.09002 * 109.48802 * 292.70837 * 13 12 11 38 38 H 1.08992 * 109.48887 * 52.79076 * 13 12 11 39 39 H 1.08991 * 109.63280 * 294.11988 * 14 13 12 40 40 H 1.09000 * 109.62738 * 173.53448 * 14 13 12 41 41 H 0.96995 * 120.00441 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.62934 * 291.47397 * 24 15 14 43 43 H 1.09001 * 109.78318 * 170.99050 * 24 15 14 44 44 H 1.09001 * 109.49078 * 307.20462 * 25 12 11 45 45 H 1.08991 * 109.49700 * 67.28898 * 25 12 11 46 46 H 1.07997 * 120.51150 * 179.73165 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 3.3670 1.2523 0.0005 5 6 4.0049 2.4080 0.0000 6 6 3.2603 3.5943 -0.0005 7 6 3.9305 4.9097 -0.0005 8 8 5.1446 4.9734 0.0005 9 7 3.1964 6.0400 -0.0005 10 6 3.8615 7.3453 -0.0066 11 6 2.8077 8.4546 -0.0122 12 7 3.4746 9.7635 -0.0190 13 6 4.2165 9.9827 1.2299 14 6 5.0405 11.2692 1.1114 15 7 4.1411 12.3659 0.7217 16 6 4.1210 13.5415 1.4235 17 1 3.2273 14.1477 1.4360 18 6 5.2494 13.9541 2.1187 19 7 6.4213 13.4196 1.8481 20 14 5.1046 15.2682 3.4386 21 1 4.8362 14.6251 4.7499 22 1 6.3736 16.0358 3.5142 23 1 3.9890 16.1882 3.1009 24 6 3.2642 12.1663 -0.4422 25 6 2.5101 10.8444 -0.2626 26 6 1.8630 3.4995 0.0049 27 7 1.3028 2.3040 0.0000 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 5.0844 2.4385 0.0009 32 1 2.2277 5.9892 -0.0009 33 1 4.4840 7.4401 0.8831 34 1 4.4845 7.4315 -0.8968 35 1 2.1852 8.3598 -0.9020 36 1 2.1846 8.3684 0.8780 37 1 3.5144 10.0753 2.0585 38 1 4.8830 9.1392 1.4098 39 1 5.8121 11.1413 0.3525 40 1 5.5020 11.4982 2.0720 41 1 7.2098 13.7082 2.3336 42 1 3.8652 12.1246 -1.3505 43 1 2.5513 12.9879 -0.5122 44 1 1.9392 10.6259 -1.1650 45 1 1.8319 10.9250 0.5868 46 1 1.2529 4.3906 0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479939947.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:25 Heat of formation + Delta-G solvation = 27.056059 kcal Electronic energy + Delta-G solvation = -27888.594629 eV Core-core repulsion = 23815.606885 eV Total energy + Delta-G solvation = -4072.987744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.89780 -39.94195 -38.70486 -38.19256 -35.61768 -34.58780 -33.98410 -32.35071 -31.37908 -29.97665 -29.06288 -28.09511 -26.07833 -25.28825 -24.57760 -23.28565 -22.62118 -21.46895 -21.22237 -19.41416 -19.15447 -18.61358 -18.09179 -17.00714 -16.85212 -16.12313 -15.77621 -15.61917 -15.14648 -14.96491 -14.77410 -14.67871 -14.36191 -14.18519 -14.05281 -13.64432 -13.56072 -13.45246 -12.97081 -12.59749 -12.57079 -12.37072 -11.90522 -11.71399 -11.54112 -11.47424 -11.37391 -11.08015 -10.77253 -10.48574 -10.37159 -10.26517 -10.07891 -9.83699 -9.77814 -9.68461 -9.63752 -9.23306 -8.52391 -7.94236 -6.68866 -5.79057 -3.20656 0.00923 0.44834 1.96235 2.47929 2.72195 3.29656 3.32979 3.36974 3.43839 3.45239 3.85942 4.07407 4.23082 4.34965 4.47638 4.50067 4.66664 4.71966 4.89443 4.96491 5.08223 5.09020 5.37782 5.39247 5.43666 5.46898 5.76551 5.86028 5.87614 5.96142 6.05067 6.06280 6.13563 6.20228 6.29152 6.46614 6.50512 6.65278 6.89634 7.10982 7.21062 7.41606 7.48971 7.60183 7.67079 7.79646 7.85337 8.42176 9.19991 9.83250 10.41532 11.29731 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027989 B = 0.001782 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.168469 B =15708.677416 C =16037.283705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.284 6.284 3 C 0.516 3.484 4 N -0.525 5.525 5 C 0.252 3.748 6 C -0.281 4.281 7 C 0.573 3.427 8 O -0.526 6.526 9 N -0.722 5.722 10 C 0.121 3.879 11 C 0.044 3.956 12 N -0.529 5.529 13 C 0.030 3.970 14 C 0.177 3.823 15 N -0.595 5.595 16 C -0.254 4.254 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.148 3.852 25 C 0.046 3.954 26 C 0.224 3.776 27 N -0.570 5.570 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.193 0.807 32 H 0.396 0.604 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.026 0.974 38 H 0.065 0.935 39 H 0.028 0.972 40 H 0.089 0.911 41 H 0.254 0.746 42 H 0.026 0.974 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.028 0.972 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.416 -23.790 -4.526 27.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.184 6.184 3 C 0.215 3.785 4 N -0.249 5.249 5 C 0.084 3.916 6 C -0.290 4.290 7 C 0.358 3.642 8 O -0.403 6.403 9 N -0.374 5.374 10 C -0.002 4.002 11 C -0.085 4.085 12 N -0.254 5.254 13 C -0.098 4.098 14 C 0.051 3.949 15 N -0.319 5.319 16 C -0.383 4.383 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.021 3.979 25 C -0.083 4.083 26 C 0.057 3.943 27 N -0.299 5.299 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.085 0.915 31 H 0.210 0.790 32 H 0.230 0.770 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.044 0.956 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.047 0.953 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -12.478 -24.900 -4.834 28.268 hybrid contribution -1.011 1.540 1.368 2.295 sum -13.489 -23.360 -3.465 27.197 Atomic orbital electron populations 1.23099 0.75063 1.04019 1.03212 1.86094 1.23885 1.22506 1.85953 1.21012 0.86374 0.84900 0.86221 1.67770 1.07239 1.29937 1.19998 1.23443 1.01404 0.84115 0.82618 1.21622 0.96137 0.96865 1.14347 1.17536 0.86830 0.82952 0.76892 1.90847 1.13056 1.87081 1.49318 1.45825 1.10051 1.06205 1.75309 1.21468 0.95468 0.79415 1.03872 1.22207 0.95215 0.90456 1.00653 1.61883 1.26764 1.00062 1.36704 1.23017 0.97163 1.01148 0.88511 1.20875 0.90227 0.82656 1.01127 1.44124 1.44931 1.13247 1.29556 1.19196 0.95971 0.98674 1.24469 0.91618 1.25029 0.94799 0.98611 1.01253 1.70020 0.97692 1.45375 1.41574 0.86287 0.76964 0.81302 0.82185 1.21520 1.21721 1.20488 1.20971 0.93194 0.92717 0.90984 1.22629 0.93545 0.93191 0.98934 1.23191 0.91361 0.94707 0.85028 1.68083 1.41016 0.99024 1.21764 0.91512 0.87492 0.91517 0.79019 0.76951 0.90627 0.89975 0.90797 0.94909 0.95563 0.91718 0.95394 0.89283 0.93559 0.95591 0.92552 0.91955 0.95323 0.80690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.35 101.05 1.05 1.25 16 2 O -0.28 -2.57 10.55 -17.58 -0.19 -2.75 16 3 C 0.52 5.14 8.48 -90.99 -0.77 4.37 16 4 N -0.52 -5.58 10.45 -14.39 -0.15 -5.73 16 5 C 0.25 2.33 10.87 -16.79 -0.18 2.15 16 6 C -0.28 -2.43 5.90 -104.70 -0.62 -3.05 16 7 C 0.57 6.09 7.78 -12.43 -0.10 5.99 16 8 O -0.53 -7.65 16.44 5.30 0.09 -7.56 16 9 N -0.72 -6.42 5.51 -61.31 -0.34 -6.76 16 10 C 0.12 1.41 5.60 -4.04 -0.02 1.39 16 11 C 0.04 0.52 5.08 -3.82 -0.02 0.50 16 12 N -0.53 -8.67 4.63 -234.32 -1.08 -9.76 16 13 C 0.03 0.57 5.46 -3.70 -0.02 0.55 16 14 C 0.18 4.21 5.42 -3.60 -0.02 4.19 16 15 N -0.60 -14.82 3.04 -172.02 -0.52 -15.35 16 16 C -0.25 -6.90 9.63 -15.06 -0.15 -7.05 16 17 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 18 C 0.00 0.05 4.94 -17.43 -0.09 -0.04 16 19 N -0.90 -26.10 11.15 55.49 0.62 -25.48 16 20 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.15 3.05 6.69 -3.60 -0.02 3.03 16 25 C 0.05 0.77 5.62 -3.70 -0.02 0.75 16 26 C 0.22 1.55 10.81 -16.79 -0.18 1.37 16 27 N -0.57 -4.83 9.19 -14.39 -0.13 -4.96 16 28 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 29 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 31 H 0.19 1.52 7.74 -52.49 -0.41 1.11 16 32 H 0.40 2.19 6.60 -40.82 -0.27 1.92 16 33 H 0.08 1.02 6.40 -51.93 -0.33 0.69 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.74 7.97 -51.93 -0.41 0.33 16 36 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 1.11 6.16 -51.93 -0.32 0.79 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.09 2.36 6.12 -51.93 -0.32 2.04 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 44 H 0.06 0.87 7.99 -51.93 -0.41 0.45 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.18 0.57 6.53 -52.49 -0.34 0.23 16 LS Contribution 377.29 15.07 5.69 5.69 Total: -1.00 -33.96 377.29 -8.79 -42.76 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.58 Total: -2.02 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: -1.16 Total: 15.41 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -1.61 Total: -68.03 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.10 Total: -10.32 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.96 -8.79 -42.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479939947.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.811 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds