Wall clock time and date at job start Tue Mar 31 2020 18:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35297 * 116.99742 * 2 1 4 4 N 1.32464 * 119.02069 * 179.97438 * 3 2 1 5 5 C 1.32011 * 120.91935 * 179.97438 * 4 3 2 6 6 C 1.40056 * 118.98681 * 0.02562 * 5 4 3 7 7 C 1.47627 * 120.88550 * 179.97438 * 6 5 4 8 8 O 1.21578 * 120.00143 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00181 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00029 * 180.27690 * 9 7 6 11 11 C 1.53006 * 109.46937 * 179.72264 * 10 9 7 12 12 N 1.46900 * 109.46674 * 180.02562 * 11 10 9 13 13 C 1.46908 * 110.99843 * 294.29833 * 12 11 10 14 14 C 1.53235 * 109.33753 * 172.74909 * 13 12 11 15 15 N 1.47085 * 108.52242 * 53.83486 * 14 13 12 16 16 C 1.36932 * 120.88250 * 128.83527 * 15 14 13 17 17 H 1.07997 * 119.99773 * 206.55978 * 16 15 14 18 18 C 1.38810 * 120.00008 * 26.56319 * 16 15 14 19 19 N 1.31613 * 120.00409 * 17.01550 * 18 16 15 20 20 Si 1.86809 * 119.99710 * 197.01597 * 18 16 15 21 21 H 1.48499 * 109.46875 * 89.99800 * 20 18 16 22 22 H 1.48502 * 109.46936 * 209.99861 * 20 18 16 23 23 H 1.48501 * 109.47098 * 329.99904 * 20 18 16 24 24 C 1.47084 * 118.23086 * 308.80977 * 15 14 13 25 25 C 1.46900 * 110.99700 * 170.00297 * 12 11 10 26 26 C 1.40058 * 118.23489 * 0.25072 * 6 5 4 27 27 N 1.32014 * 118.98636 * 359.48846 * 26 6 5 28 28 H 1.08999 * 109.47262 * 60.00585 * 1 2 3 29 29 H 1.08995 * 109.46934 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47433 * 300.00399 * 1 2 3 31 31 H 1.07994 * 120.51158 * 179.97438 * 5 4 3 32 32 H 0.97004 * 120.00032 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.46767 * 299.72142 * 10 9 7 34 34 H 1.08999 * 109.47195 * 59.72193 * 10 9 7 35 35 H 1.09003 * 109.46816 * 299.99780 * 11 10 9 36 36 H 1.08999 * 109.47235 * 59.99954 * 11 10 9 37 37 H 1.09002 * 109.48802 * 292.70837 * 13 12 11 38 38 H 1.08992 * 109.48887 * 52.79076 * 13 12 11 39 39 H 1.08991 * 109.63280 * 294.11988 * 14 13 12 40 40 H 1.09000 * 109.62738 * 173.53448 * 14 13 12 41 41 H 0.96995 * 120.00441 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.62934 * 291.47397 * 24 15 14 43 43 H 1.09001 * 109.78318 * 170.99050 * 24 15 14 44 44 H 1.09001 * 109.49078 * 307.20462 * 25 12 11 45 45 H 1.08991 * 109.49700 * 67.28898 * 25 12 11 46 46 H 1.07997 * 120.51150 * 179.73165 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 3.3670 1.2523 0.0005 5 6 4.0049 2.4080 0.0000 6 6 3.2603 3.5943 -0.0005 7 6 3.9305 4.9097 -0.0005 8 8 5.1446 4.9734 0.0005 9 7 3.1964 6.0400 -0.0005 10 6 3.8615 7.3453 -0.0066 11 6 2.8077 8.4546 -0.0122 12 7 3.4746 9.7635 -0.0190 13 6 4.2165 9.9827 1.2299 14 6 5.0405 11.2692 1.1114 15 7 4.1411 12.3659 0.7217 16 6 4.1210 13.5415 1.4235 17 1 3.2273 14.1477 1.4360 18 6 5.2494 13.9541 2.1187 19 7 6.4213 13.4196 1.8481 20 14 5.1046 15.2682 3.4386 21 1 4.8362 14.6251 4.7499 22 1 6.3736 16.0358 3.5142 23 1 3.9890 16.1882 3.1009 24 6 3.2642 12.1663 -0.4422 25 6 2.5101 10.8444 -0.2626 26 6 1.8630 3.4995 0.0049 27 7 1.3028 2.3040 0.0000 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 5.0844 2.4385 0.0009 32 1 2.2277 5.9892 -0.0009 33 1 4.4840 7.4401 0.8831 34 1 4.4845 7.4315 -0.8968 35 1 2.1852 8.3598 -0.9020 36 1 2.1846 8.3684 0.8780 37 1 3.5144 10.0753 2.0585 38 1 4.8830 9.1392 1.4098 39 1 5.8121 11.1413 0.3525 40 1 5.5020 11.4982 2.0720 41 1 7.2098 13.7082 2.3336 42 1 3.8652 12.1246 -1.3505 43 1 2.5513 12.9879 -0.5122 44 1 1.9392 10.6259 -1.1650 45 1 1.8319 10.9250 0.5868 46 1 1.2529 4.3906 0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479939947.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:24 Heat of formation + Delta-G solvation = -1.885296 kcal Electronic energy + Delta-G solvation = -27889.849620 eV Core-core repulsion = 23815.606885 eV Total energy + Delta-G solvation = -4074.242736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.55943 -40.77638 -39.73219 -39.23729 -36.87861 -35.64779 -35.02139 -33.44684 -32.80814 -31.62190 -30.25242 -28.68441 -27.58637 -25.93756 -25.49470 -24.74363 -24.21909 -22.66009 -22.07197 -20.80826 -20.00539 -19.31998 -18.88023 -18.66465 -17.61356 -17.26059 -16.77935 -16.63756 -16.22630 -16.02364 -15.86644 -15.57185 -15.53957 -15.27005 -15.19982 -15.00083 -14.78542 -14.67664 -14.46935 -14.06119 -13.19879 -13.12422 -12.98949 -12.93544 -12.80280 -12.61425 -12.55984 -12.42129 -12.21601 -12.17732 -12.00941 -11.83370 -11.53313 -11.42201 -11.16756 -10.58123 -10.49292 -10.40353 -10.06426 -9.26563 -8.67077 -7.86510 -5.31250 -0.67481 -0.16894 1.39533 1.47186 1.48210 1.57349 1.68547 1.89479 2.51477 2.60329 2.75801 3.08523 3.26714 3.29185 3.48290 3.62558 3.70311 3.79496 3.92731 4.13099 4.32489 4.34563 4.38191 4.38384 4.50728 4.51517 4.58812 4.67911 4.69365 4.74579 4.84931 4.86789 4.97117 5.02460 5.08470 5.23752 5.29600 5.40274 5.42918 5.62489 5.70635 5.87638 6.16674 6.26641 6.38389 6.41378 6.76525 7.08896 7.14328 7.85774 8.39445 9.20163 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027989 B = 0.001782 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.168469 B =15708.677416 C =16037.283705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.301 6.301 3 C 0.506 3.494 4 N -0.551 5.551 5 C 0.246 3.754 6 C -0.284 4.284 7 C 0.577 3.423 8 O -0.572 6.572 9 N -0.704 5.704 10 C 0.129 3.871 11 C 0.052 3.948 12 N -0.543 5.543 13 C 0.050 3.950 14 C 0.183 3.817 15 N -0.614 5.614 16 C -0.262 4.262 17 H 0.070 0.930 18 C -0.053 4.053 19 N -0.937 5.937 20 Si 0.968 3.032 21 H -0.286 1.286 22 H -0.297 1.297 23 H -0.267 1.267 24 C 0.140 3.860 25 C 0.059 3.941 26 C 0.239 3.761 27 N -0.569 5.569 28 H 0.070 0.930 29 H 0.132 0.868 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.417 0.583 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.050 0.950 37 H 0.023 0.977 38 H 0.078 0.922 39 H -0.004 1.004 40 H 0.054 0.946 41 H 0.249 0.751 42 H 0.014 0.986 43 H 0.062 0.938 44 H 0.102 0.898 45 H 0.029 0.971 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.793 -24.566 -4.764 30.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.201 6.201 3 C 0.206 3.794 4 N -0.277 5.277 5 C 0.080 3.920 6 C -0.293 4.293 7 C 0.363 3.637 8 O -0.452 6.452 9 N -0.356 5.356 10 C 0.005 3.995 11 C -0.076 4.076 12 N -0.268 5.268 13 C -0.079 4.079 14 C 0.057 3.943 15 N -0.338 5.338 16 C -0.392 4.392 17 H 0.087 0.913 18 C -0.249 4.249 19 N -0.583 5.583 20 Si 0.796 3.204 21 H -0.213 1.213 22 H -0.223 1.223 23 H -0.192 1.192 24 C 0.015 3.985 25 C -0.070 4.070 26 C 0.072 3.928 27 N -0.298 5.298 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.088 0.912 31 H 0.212 0.788 32 H 0.255 0.745 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.096 0.904 39 H 0.014 0.986 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.032 0.968 43 H 0.080 0.920 44 H 0.120 0.880 45 H 0.047 0.953 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -15.940 -25.699 -5.093 30.667 hybrid contribution -0.019 1.734 1.359 2.203 sum -15.959 -23.965 -3.733 29.034 Atomic orbital electron populations 1.23384 0.73066 1.05837 1.03538 1.86085 1.25917 1.22475 1.85665 1.21250 0.86439 0.85663 0.86075 1.67753 1.08054 1.30588 1.21305 1.23552 1.01804 0.84307 0.82368 1.21407 0.96913 0.95386 1.15554 1.17742 0.86276 0.83744 0.75893 1.90835 1.15152 1.87689 1.51506 1.45546 1.10996 1.04736 1.74369 1.21196 0.95427 0.80709 1.02161 1.22225 0.95032 0.87402 1.02964 1.61747 1.27785 1.02215 1.35081 1.22610 0.96980 0.98583 0.89773 1.20619 0.90435 0.85122 0.98121 1.44413 1.45513 1.12929 1.30993 1.19558 0.95946 0.99324 1.24403 0.91251 1.25806 0.94518 1.01102 1.03438 1.70191 0.98244 1.47126 1.42740 0.85254 0.76784 0.78894 0.79440 1.21264 1.22341 1.19167 1.21174 0.92761 0.95671 0.88930 1.22459 0.92821 0.90944 1.00792 1.23806 0.90841 0.95498 0.82691 1.68208 1.40535 0.99064 1.22031 0.91081 0.85047 0.91174 0.78788 0.74518 0.92683 0.91637 0.87609 0.93191 0.95828 0.90427 0.98602 0.92751 0.94151 0.96762 0.91977 0.87982 0.95262 0.76611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.35 113.37 1.17 1.46 16 2 O -0.30 -5.13 10.55 -85.83 -0.91 -6.03 16 3 C 0.51 9.53 8.48 180.48 1.53 11.06 16 4 N -0.55 -11.54 10.45 -312.42 -3.26 -14.80 16 5 C 0.25 4.48 10.87 85.11 0.93 5.41 16 6 C -0.28 -4.42 5.90 -19.92 -0.12 -4.54 16 7 C 0.58 11.38 7.78 86.72 0.67 12.05 16 8 O -0.57 -16.61 16.44 -3.96 -0.07 -16.68 16 9 N -0.70 -10.38 5.51 -466.16 -2.57 -12.95 16 10 C 0.13 2.74 5.60 86.38 0.48 3.22 16 11 C 0.05 1.02 5.08 86.31 0.44 1.46 16 12 N -0.54 -16.50 4.63 -895.24 -4.15 -20.65 16 13 C 0.05 1.83 5.46 86.38 0.47 2.31 16 14 C 0.18 8.99 5.42 86.35 0.47 9.45 16 15 N -0.61 -30.94 3.04 -698.14 -2.12 -33.06 16 16 C -0.26 -14.40 9.63 84.03 0.81 -13.60 16 17 H 0.07 3.68 7.88 -2.91 -0.02 3.65 16 18 C -0.05 -3.00 4.94 84.86 0.42 -2.58 16 19 N -0.94 -56.17 11.15 21.65 0.24 -55.93 16 20 Si 0.97 44.91 29.59 68.60 2.03 46.94 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 C 0.14 5.64 6.69 86.35 0.58 6.22 16 25 C 0.06 1.78 5.62 86.38 0.49 2.26 16 26 C 0.24 2.55 10.81 85.11 0.92 3.47 16 27 N -0.57 -8.29 9.19 -312.41 -2.87 -11.16 16 28 H 0.07 0.50 8.09 -2.39 -0.02 0.48 16 29 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.51 8.09 -2.39 -0.02 0.49 16 31 H 0.20 3.21 7.74 -2.91 -0.02 3.19 16 32 H 0.42 2.64 6.60 -92.71 -0.61 2.02 16 33 H 0.05 1.42 6.40 -2.39 -0.02 1.41 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.11 1.50 7.97 -2.39 -0.02 1.48 16 36 H 0.05 0.88 8.12 -2.39 -0.02 0.86 16 37 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 2.64 6.16 -2.39 -0.01 2.62 16 39 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.05 3.01 6.12 -2.39 -0.01 3.00 16 41 H 0.25 14.51 8.31 -92.71 -0.77 13.73 16 42 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.06 2.37 7.96 -2.39 -0.02 2.36 16 44 H 0.10 2.33 7.99 -2.39 -0.02 2.31 16 45 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.22 0.31 6.53 -2.91 -0.02 0.29 16 Total: -1.00 -77.28 377.29 -4.01 -81.29 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 0.40 Total: 5.38 kcal Atomic # 6 Polarization: 28.40 SS G_CDS: 9.26 Total: 37.66 kcal Atomic # 7 Polarization: -133.82 SS G_CDS: -14.73 Total: -148.55 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.97 Total: -22.71 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -77.28 -4.01 -81.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479939947.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.403 kcal (2) G-P(sol) polarization free energy of solvation -77.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds