Wall clock time and date at job start Tue Mar 31 2020 18:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 120.00195 * 2 1 4 4 O 1.21277 * 120.00298 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00041 * 0.02562 * 3 2 1 6 6 C 1.50696 * 109.47490 * 179.97438 * 5 3 2 7 7 C 1.39866 * 125.89915 * 125.01392 * 6 5 3 8 8 C 1.35320 * 107.91898 * 179.97438 * 7 6 5 9 9 N 1.34951 * 107.74569 * 359.97438 * 8 7 6 10 10 H 0.96996 * 126.03426 * 179.97438 * 9 8 7 11 11 N 1.30844 * 125.89476 * 304.97479 * 6 5 3 12 12 C 1.46501 * 119.99980 * 180.02562 * 2 1 3 13 13 H 1.08997 * 110.27361 * 182.08337 * 12 2 1 14 14 C 1.54589 * 110.30692 * 304.28113 * 12 2 1 15 15 C 1.54934 * 102.92484 * 96.96026 * 14 12 2 16 16 N 1.48530 * 103.22745 * 37.41129 * 15 14 12 17 17 C 1.46906 * 111.00269 * 200.28148 * 16 15 14 18 18 C 1.50700 * 109.46798 * 307.40072 * 17 16 15 19 19 O 1.21291 * 120.00396 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99426 * 180.02562 * 18 17 16 21 21 C 1.37104 * 119.99787 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99536 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99965 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99825 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00128 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46796 * 90.00320 * 25 23 21 27 27 H 1.48495 * 109.47213 * 209.99954 * 25 23 21 28 28 H 1.48498 * 109.47253 * 330.00641 * 25 23 21 29 29 C 1.47899 * 105.81925 * 320.79589 * 16 15 14 30 30 H 1.08994 * 109.47442 * 89.98792 * 1 2 3 31 31 H 1.08999 * 109.46828 * 209.99532 * 1 2 3 32 32 H 1.09006 * 109.46463 * 329.99022 * 1 2 3 33 33 H 1.09002 * 109.46974 * 59.99026 * 5 3 2 34 34 H 1.09000 * 109.47028 * 299.99901 * 5 3 2 35 35 H 1.07993 * 126.04141 * 359.97438 * 7 6 5 36 36 H 1.08004 * 126.12796 * 179.97438 * 8 7 6 37 37 H 1.09007 * 110.72413 * 215.31844 * 14 12 2 38 38 H 1.09000 * 110.72554 * 338.59917 * 14 12 2 39 39 H 1.09002 * 110.66556 * 278.97969 * 15 14 12 40 40 H 1.08997 * 110.67426 * 155.84882 * 15 14 12 41 41 H 1.09005 * 109.46691 * 67.39407 * 17 16 15 42 42 H 1.08993 * 109.47319 * 187.39310 * 17 16 15 43 43 H 0.96998 * 120.00827 * 359.97438 * 20 18 17 44 44 H 0.96996 * 119.99922 * 179.97438 * 24 23 21 45 45 H 1.09001 * 109.91747 * 265.97544 * 29 16 15 46 46 H 1.09004 * 110.08050 * 144.77528 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3647 3.6178 0.0011 7 6 2.4035 4.6640 -0.9264 8 6 3.4217 5.4867 -0.5835 9 7 4.0061 4.9793 0.5220 10 1 4.7644 5.3597 0.9923 11 7 3.3251 3.8056 0.8697 12 6 2.1975 -1.2687 -0.0006 13 1 3.2712 -1.0850 0.0367 14 6 1.7585 -2.1422 1.1970 15 6 0.7043 -3.0876 0.5684 16 7 1.2610 -3.3690 -0.7796 17 6 0.2128 -3.8420 -1.6939 18 6 -0.5176 -5.0001 -1.0644 19 8 -0.1963 -5.3932 0.0372 20 7 -1.5271 -5.5998 -1.7260 21 6 -2.1913 -6.6538 -1.1536 22 1 -1.9052 -7.0037 -0.1728 23 6 -3.2324 -7.2717 -1.8354 24 7 -3.8687 -8.2823 -1.2870 25 14 -3.7276 -6.6659 -3.5317 26 1 -2.9488 -7.3952 -4.5645 27 1 -5.1774 -6.9102 -3.7408 28 1 -3.4503 -5.2110 -3.6382 29 6 1.8393 -2.0922 -1.2516 30 1 -0.3634 0.0002 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5140 33 1 0.7591 2.5298 0.8908 34 1 0.7585 2.5303 -0.8892 35 1 1.7385 4.7925 -1.7674 36 1 3.7143 6.3879 -1.1019 37 1 2.6017 -2.7110 1.5891 38 1 1.3094 -1.5285 1.9779 39 1 -0.2615 -2.5885 0.4892 40 1 0.6172 -4.0065 1.1480 41 1 -0.4903 -3.0325 -1.8903 42 1 0.6665 -4.1645 -2.6310 43 1 -1.7838 -5.2858 -2.6071 44 1 -4.5957 -8.7134 -1.7628 45 1 1.1078 -1.5534 -1.8539 46 1 2.7367 -2.2827 -1.8402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481720204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:11 Heat of formation + Delta-G solvation = 38.253762 kcal Electronic energy + Delta-G solvation = -28650.903676 eV Core-core repulsion = 24578.401501 eV Total energy + Delta-G solvation = -4072.502175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.50161 -40.39008 -38.97597 -37.63802 -35.09479 -33.96751 -33.30558 -31.80804 -31.31921 -30.22925 -29.21943 -28.43519 -27.23069 -26.18468 -24.02556 -22.29428 -21.44766 -21.11930 -19.99793 -19.43830 -18.94752 -18.42958 -18.29362 -17.43610 -16.53608 -16.00600 -15.84061 -15.21195 -15.09286 -14.76178 -14.72813 -14.39460 -14.21644 -13.84582 -13.62017 -13.37243 -13.31935 -13.05409 -12.87486 -12.66435 -12.57811 -12.38333 -12.28977 -12.03369 -11.92305 -11.64519 -11.31723 -11.20530 -10.95737 -10.90231 -10.69272 -10.60459 -10.00219 -9.96189 -9.62105 -9.57766 -9.02574 -8.83998 -8.51282 -8.22095 -7.99491 -6.33781 -3.85322 1.62436 2.35662 2.49352 2.58661 2.89278 2.99785 3.05107 3.13255 3.69357 4.06464 4.10445 4.21420 4.32006 4.55769 4.58867 4.75497 4.80127 4.84887 4.90842 5.04306 5.14368 5.20400 5.24851 5.30055 5.40208 5.41817 5.44581 5.51436 5.58889 5.65257 5.77241 5.78619 5.87735 5.94797 6.02931 6.20427 6.27052 6.40915 6.62382 6.97442 7.13415 7.17591 7.20872 7.40544 7.55379 8.04104 8.11932 8.56735 8.92326 9.39260 9.79446 10.79160 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026002 B = 0.002090 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.566619 B =13392.019225 C =13955.953878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.609 5.609 3 C 0.518 3.482 4 O -0.524 6.524 5 C -0.059 4.059 6 C 0.085 3.915 7 C -0.266 4.266 8 C 0.054 3.946 9 N -0.478 5.478 10 H 0.438 0.562 11 N -0.261 5.261 12 C 0.130 3.870 13 H 0.109 0.891 14 C -0.135 4.135 15 C 0.034 3.966 16 N -0.493 5.493 17 C 0.035 3.965 18 C 0.451 3.549 19 O -0.562 6.562 20 N -0.588 5.588 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.025 3.975 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.148 0.852 36 H 0.176 0.824 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.120 0.880 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.370 0.630 44 H 0.274 0.726 45 H 0.049 0.951 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.262 28.065 -1.655 29.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.343 5.343 3 C 0.304 3.696 4 O -0.399 6.399 5 C -0.100 4.100 6 C -0.083 4.083 7 C -0.296 4.296 8 C -0.094 4.094 9 N -0.186 5.186 10 H 0.282 0.718 11 N -0.085 5.085 12 C 0.027 3.973 13 H 0.127 0.873 14 C -0.174 4.174 15 C -0.093 4.093 16 N -0.217 5.217 17 C -0.097 4.097 18 C 0.237 3.763 19 O -0.444 6.444 20 N -0.227 5.227 21 C -0.433 4.433 22 H 0.138 0.862 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.104 4.104 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.165 0.835 36 H 0.193 0.807 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.138 0.862 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.910 26.767 0.114 28.905 hybrid contribution -1.375 1.557 -2.220 3.041 sum 9.535 28.324 -2.105 29.960 Atomic orbital electron populations 1.22014 0.79590 1.04077 1.02212 1.47942 1.06912 1.05670 1.73809 1.20365 0.88099 0.84858 0.76242 1.90732 1.13708 1.86991 1.48496 1.20080 0.96040 0.88375 1.05552 1.21570 0.95909 0.96271 0.94580 1.21390 1.04785 0.98262 1.05162 1.22561 0.95661 1.00215 0.90913 1.46395 1.28665 1.20167 1.23353 0.71789 1.77417 1.08297 0.99486 1.23265 1.21953 0.98085 0.82160 0.95138 0.87330 1.22948 1.00379 0.97336 0.96720 1.23638 0.94338 1.00672 0.90629 1.64637 1.29481 1.25250 1.02361 1.22134 0.93378 0.97080 0.97132 1.19607 0.82981 0.86369 0.87388 1.90484 1.67186 1.66151 1.20575 1.42200 1.31358 1.31378 1.17811 1.19427 1.12523 1.06700 1.04698 0.86228 1.25044 0.96550 0.96230 0.98329 1.69620 1.22575 1.21628 1.38160 0.86673 0.79264 0.78907 0.84540 1.19573 1.20187 1.19557 1.23299 1.00551 0.89918 0.96611 0.92416 0.89878 0.90780 0.87181 0.86914 0.83455 0.80717 0.89663 0.90787 0.94299 0.86171 0.93376 0.89088 0.79697 0.91589 0.93313 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 9.22 59.85 0.55 1.07 16 2 N -0.61 -6.52 2.72 -172.39 -0.47 -6.99 16 3 C 0.52 6.14 7.66 -10.98 -0.08 6.05 16 4 O -0.52 -8.40 14.92 5.56 0.08 -8.31 16 5 C -0.06 -0.50 4.83 -29.04 -0.14 -0.64 16 6 C 0.08 0.89 6.01 -82.41 -0.50 0.40 16 7 C -0.27 -2.19 10.72 -40.01 -0.43 -2.62 16 8 C 0.05 0.36 11.99 -17.22 -0.21 0.15 16 9 N -0.48 -3.95 7.36 30.45 0.22 -3.73 16 10 H 0.44 2.21 8.96 -182.61 -1.64 0.58 16 11 N -0.26 -3.19 12.05 33.67 0.41 -2.78 16 12 C 0.13 1.61 3.44 -66.58 -0.23 1.39 16 13 H 0.11 1.50 6.96 -51.93 -0.36 1.14 16 14 C -0.13 -1.73 6.14 -24.88 -0.15 -1.88 16 15 C 0.03 0.53 4.93 -1.90 -0.01 0.52 16 16 N -0.49 -7.79 5.26 -231.89 -1.22 -9.01 16 17 C 0.03 0.57 5.52 -4.97 -0.03 0.54 16 18 C 0.45 9.90 7.49 -10.99 -0.08 9.81 16 19 O -0.56 -14.31 13.10 5.55 0.07 -14.24 16 20 N -0.59 -13.64 5.09 -10.96 -0.06 -13.70 16 21 C -0.30 -8.43 10.16 -14.93 -0.15 -8.58 16 22 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.33 13.96 55.50 0.77 -24.56 16 25 Si 0.88 19.00 27.74 -169.99 -4.71 14.29 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 28 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 29 C 0.03 0.32 6.21 -2.76 -0.02 0.31 16 30 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 31 H 0.08 0.78 4.76 -51.93 -0.25 0.53 16 32 H 0.07 0.41 6.44 -51.93 -0.33 0.08 16 33 H 0.11 0.73 7.40 -51.93 -0.38 0.34 16 34 H 0.11 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.18 0.44 8.06 -52.48 -0.42 0.02 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 0.87 7.89 -51.93 -0.41 0.46 16 39 H 0.04 0.58 5.87 -51.93 -0.30 0.28 16 40 H 0.12 2.31 5.97 -51.93 -0.31 2.00 16 41 H 0.05 0.69 7.81 -51.93 -0.41 0.28 16 42 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.37 7.55 5.76 -40.82 -0.24 7.32 16 44 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.05 0.58 6.67 -51.93 -0.35 0.23 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 369.49 15.07 5.57 5.57 Total: -1.00 -36.94 369.49 -8.38 -45.32 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -7.48 Total: 10.62 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -1.57 Total: 7.54 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.34 Total: -60.78 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.16 Total: -22.55 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.94 -8.38 -45.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481720204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.570 kcal (2) G-P(sol) polarization free energy of solvation -36.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds