Wall clock time and date at job start Tue Mar 31 2020 18:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 120.00195 * 2 1 4 4 O 1.21277 * 120.00298 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00041 * 0.02562 * 3 2 1 6 6 C 1.50696 * 109.47490 * 179.97438 * 5 3 2 7 7 C 1.39866 * 125.89915 * 125.01392 * 6 5 3 8 8 C 1.35320 * 107.91898 * 179.97438 * 7 6 5 9 9 N 1.34951 * 107.74569 * 359.97438 * 8 7 6 10 10 H 0.96996 * 126.03426 * 179.97438 * 9 8 7 11 11 N 1.30844 * 125.89476 * 304.97479 * 6 5 3 12 12 C 1.46501 * 119.99980 * 180.02562 * 2 1 3 13 13 H 1.08997 * 110.27361 * 182.08337 * 12 2 1 14 14 C 1.54589 * 110.30692 * 304.28113 * 12 2 1 15 15 C 1.54934 * 102.92484 * 96.96026 * 14 12 2 16 16 N 1.48530 * 103.22745 * 37.41129 * 15 14 12 17 17 C 1.46906 * 111.00269 * 200.28148 * 16 15 14 18 18 C 1.50700 * 109.46798 * 307.40072 * 17 16 15 19 19 O 1.21291 * 120.00396 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99426 * 180.02562 * 18 17 16 21 21 C 1.37104 * 119.99787 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99536 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99965 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99825 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00128 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46796 * 90.00320 * 25 23 21 27 27 H 1.48495 * 109.47213 * 209.99954 * 25 23 21 28 28 H 1.48498 * 109.47253 * 330.00641 * 25 23 21 29 29 C 1.47899 * 105.81925 * 320.79589 * 16 15 14 30 30 H 1.08994 * 109.47442 * 89.98792 * 1 2 3 31 31 H 1.08999 * 109.46828 * 209.99532 * 1 2 3 32 32 H 1.09006 * 109.46463 * 329.99022 * 1 2 3 33 33 H 1.09002 * 109.46974 * 59.99026 * 5 3 2 34 34 H 1.09000 * 109.47028 * 299.99901 * 5 3 2 35 35 H 1.07993 * 126.04141 * 359.97438 * 7 6 5 36 36 H 1.08004 * 126.12796 * 179.97438 * 8 7 6 37 37 H 1.09007 * 110.72413 * 215.31844 * 14 12 2 38 38 H 1.09000 * 110.72554 * 338.59917 * 14 12 2 39 39 H 1.09002 * 110.66556 * 278.97969 * 15 14 12 40 40 H 1.08997 * 110.67426 * 155.84882 * 15 14 12 41 41 H 1.09005 * 109.46691 * 67.39407 * 17 16 15 42 42 H 1.08993 * 109.47319 * 187.39310 * 17 16 15 43 43 H 0.96998 * 120.00827 * 359.97438 * 20 18 17 44 44 H 0.96996 * 119.99922 * 179.97438 * 24 23 21 45 45 H 1.09001 * 109.91747 * 265.97544 * 29 16 15 46 46 H 1.09004 * 110.08050 * 144.77528 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3647 3.6178 0.0011 7 6 2.4035 4.6640 -0.9264 8 6 3.4217 5.4867 -0.5835 9 7 4.0061 4.9793 0.5220 10 1 4.7644 5.3597 0.9923 11 7 3.3251 3.8056 0.8697 12 6 2.1975 -1.2687 -0.0006 13 1 3.2712 -1.0850 0.0367 14 6 1.7585 -2.1422 1.1970 15 6 0.7043 -3.0876 0.5684 16 7 1.2610 -3.3690 -0.7796 17 6 0.2128 -3.8420 -1.6939 18 6 -0.5176 -5.0001 -1.0644 19 8 -0.1963 -5.3932 0.0372 20 7 -1.5271 -5.5998 -1.7260 21 6 -2.1913 -6.6538 -1.1536 22 1 -1.9052 -7.0037 -0.1728 23 6 -3.2324 -7.2717 -1.8354 24 7 -3.8687 -8.2823 -1.2870 25 14 -3.7276 -6.6659 -3.5317 26 1 -2.9488 -7.3952 -4.5645 27 1 -5.1774 -6.9102 -3.7408 28 1 -3.4503 -5.2110 -3.6382 29 6 1.8393 -2.0922 -1.2516 30 1 -0.3634 0.0002 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5140 33 1 0.7591 2.5298 0.8908 34 1 0.7585 2.5303 -0.8892 35 1 1.7385 4.7925 -1.7674 36 1 3.7143 6.3879 -1.1019 37 1 2.6017 -2.7110 1.5891 38 1 1.3094 -1.5285 1.9779 39 1 -0.2615 -2.5885 0.4892 40 1 0.6172 -4.0065 1.1480 41 1 -0.4903 -3.0325 -1.8903 42 1 0.6665 -4.1645 -2.6310 43 1 -1.7838 -5.2858 -2.6071 44 1 -4.5957 -8.7134 -1.7628 45 1 1.1078 -1.5534 -1.8539 46 1 2.7367 -2.2827 -1.8402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481720204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:10 Heat of formation + Delta-G solvation = 7.473359 kcal Electronic energy + Delta-G solvation = -28652.238415 eV Core-core repulsion = 24578.401501 eV Total energy + Delta-G solvation = -4073.836914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.11605 -41.38672 -40.39732 -39.00304 -36.26563 -35.74539 -34.01481 -33.75583 -32.50315 -30.80163 -30.15272 -29.31001 -28.43690 -27.27704 -25.71941 -23.06763 -22.41788 -22.08501 -21.29392 -20.77928 -20.17284 -19.71999 -18.98185 -18.33956 -17.74608 -17.37850 -16.76925 -16.66690 -16.37782 -16.17524 -15.73164 -15.42368 -15.10856 -14.98217 -14.68158 -14.48191 -14.35087 -14.17566 -13.98782 -13.80239 -13.74045 -13.42139 -13.21246 -13.12074 -12.99077 -12.92764 -12.64294 -12.43043 -12.35199 -12.15842 -11.95721 -11.85871 -11.53550 -11.44708 -10.83936 -10.32058 -10.26451 -10.20749 -9.72052 -9.58371 -9.24946 -8.39125 -5.99833 1.05384 1.31734 1.37804 1.46343 1.64464 1.71849 1.96259 2.06453 2.16696 2.25002 2.71711 3.16694 3.24383 3.50249 3.65450 3.72875 3.83796 4.06672 4.08732 4.16718 4.20976 4.33793 4.37461 4.38011 4.42708 4.52107 4.56484 4.67560 4.72886 4.79675 4.83374 4.90164 4.94362 5.03293 5.13811 5.15869 5.28240 5.48825 5.55358 5.73034 5.89827 5.94881 6.08030 6.39805 6.53658 6.61347 6.80786 6.90870 7.19853 7.41325 7.98595 8.78305 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026002 B = 0.002090 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.566619 B =13392.019225 C =13955.953878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.605 5.605 3 C 0.514 3.486 4 O -0.574 6.574 5 C -0.054 4.054 6 C 0.067 3.933 7 C -0.286 4.286 8 C 0.065 3.935 9 N -0.479 5.479 10 H 0.448 0.552 11 N -0.321 5.321 12 C 0.137 3.863 13 H 0.091 0.909 14 C -0.124 4.124 15 C 0.040 3.960 16 N -0.515 5.515 17 C 0.046 3.954 18 C 0.450 3.550 19 O -0.604 6.604 20 N -0.589 5.589 21 C -0.325 4.325 22 H 0.056 0.944 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.260 1.260 27 H -0.276 1.276 28 H -0.228 1.228 29 C 0.034 3.966 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.170 0.830 36 H 0.218 0.782 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.389 0.611 44 H 0.278 0.722 45 H 0.070 0.930 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.503 31.893 -5.080 33.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.338 5.338 3 C 0.303 3.697 4 O -0.453 6.453 5 C -0.094 4.094 6 C -0.101 4.101 7 C -0.315 4.315 8 C -0.083 4.083 9 N -0.189 5.189 10 H 0.293 0.707 11 N -0.145 5.145 12 C 0.032 3.968 13 H 0.110 0.890 14 C -0.163 4.163 15 C -0.087 4.087 16 N -0.240 5.240 17 C -0.085 4.085 18 C 0.238 3.762 19 O -0.488 6.488 20 N -0.231 5.231 21 C -0.454 4.454 22 H 0.074 0.926 23 C -0.215 4.215 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.184 1.184 27 H -0.201 1.201 28 H -0.151 1.151 29 C -0.094 4.094 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.146 0.854 34 H 0.165 0.835 35 H 0.188 0.812 36 H 0.234 0.766 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.135 0.865 43 H 0.225 0.775 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.150 30.621 -3.304 32.428 hybrid contribution -1.042 0.369 -1.005 1.494 sum 9.108 30.991 -4.309 32.588 Atomic orbital electron populations 1.22240 0.77586 1.04894 1.03664 1.47975 1.08004 1.04686 1.73125 1.20993 0.87699 0.85973 0.75010 1.90713 1.16022 1.87687 1.50831 1.20212 0.95671 0.85603 1.07959 1.22038 0.95887 0.97291 0.94842 1.21789 1.05924 0.98042 1.05712 1.23284 0.94428 1.00795 0.89773 1.46467 1.28913 1.19494 1.24002 0.70686 1.77323 1.10066 1.01723 1.25390 1.21707 0.97477 0.82979 0.94646 0.89047 1.22824 0.99303 0.96950 0.97235 1.23396 0.95644 0.99137 0.90567 1.64582 1.29572 1.27454 1.02374 1.22092 0.93829 0.95388 0.97228 1.20792 0.81958 0.86796 0.86668 1.90505 1.68031 1.67532 1.22750 1.42010 1.31753 1.30692 1.18659 1.18983 1.14239 1.09057 1.03166 0.92607 1.26114 0.95660 0.95832 1.03854 1.69806 1.23438 1.23437 1.40845 0.85374 0.78577 0.80680 0.76946 1.18448 1.20127 1.15148 1.23251 1.00962 0.88496 0.96690 0.90552 0.91210 0.87887 0.85351 0.83547 0.81217 0.76581 0.90589 0.89735 0.93412 0.90662 0.89785 0.86478 0.77516 0.91212 0.91218 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.72 9.22 127.77 1.18 1.90 16 2 N -0.60 -11.53 2.72 -817.70 -2.23 -13.76 16 3 C 0.51 11.33 7.66 87.66 0.67 12.00 16 4 O -0.57 -18.33 14.92 -3.02 -0.05 -18.37 16 5 C -0.05 -0.75 4.83 29.10 0.14 -0.61 16 6 C 0.07 1.29 6.01 43.10 0.26 1.55 16 7 C -0.29 -3.94 10.72 21.99 0.24 -3.71 16 8 C 0.06 0.69 11.99 83.54 1.00 1.70 16 9 N -0.48 -7.41 7.36 -57.58 -0.42 -7.84 16 10 H 0.45 4.21 8.96 -213.34 -1.91 2.30 16 11 N -0.32 -7.69 12.05 -47.39 -0.57 -8.26 16 12 C 0.14 3.22 3.44 45.87 0.16 3.38 16 13 H 0.09 2.52 6.96 -2.39 -0.02 2.51 16 14 C -0.12 -3.17 6.14 31.80 0.20 -2.98 16 15 C 0.04 1.24 4.93 86.65 0.43 1.66 16 16 N -0.51 -15.51 5.26 -887.57 -4.67 -20.17 16 17 C 0.05 1.37 5.52 85.56 0.47 1.84 16 18 C 0.45 19.64 7.49 87.66 0.66 20.30 16 19 O -0.60 -32.17 13.10 -3.06 -0.04 -32.21 16 20 N -0.59 -26.95 5.09 -306.98 -1.56 -28.51 16 21 C -0.33 -18.66 10.16 84.04 0.85 -17.81 16 22 H 0.06 3.83 7.39 -2.91 -0.02 3.81 16 23 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 24 N -0.93 -55.74 13.96 21.66 0.30 -55.44 16 25 Si 0.96 37.85 27.74 68.60 1.90 39.76 16 26 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 27 H -0.28 -10.80 7.11 99.48 0.71 -10.10 16 28 H -0.23 -7.37 6.52 99.48 0.65 -6.72 16 29 C 0.03 0.79 6.21 86.45 0.54 1.33 16 30 H 0.08 0.72 7.92 -2.39 -0.02 0.70 16 31 H 0.07 1.10 4.76 -2.39 -0.01 1.09 16 32 H 0.10 0.70 6.44 -2.38 -0.02 0.69 16 33 H 0.13 1.30 7.40 -2.39 -0.02 1.28 16 34 H 0.15 1.00 8.09 -2.39 -0.02 0.98 16 35 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 36 H 0.22 0.23 8.06 -2.91 -0.02 0.20 16 37 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.08 1.95 7.89 -2.39 -0.02 1.93 16 39 H 0.05 1.38 5.87 -2.39 -0.01 1.37 16 40 H 0.08 3.06 5.97 -2.39 -0.01 3.05 16 41 H 0.08 1.97 7.81 -2.38 -0.02 1.95 16 42 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 43 H 0.39 14.63 5.76 -92.71 -0.53 14.09 16 44 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 45 H 0.07 1.33 6.67 -2.39 -0.02 1.31 16 46 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -89.03 369.49 -1.54 -90.57 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: -1.46 Total: 34.10 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 7.25 Total: 20.14 kcal Atomic # 7 Polarization: -124.83 SS G_CDS: -9.15 Total: -133.99 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -0.09 Total: -50.58 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 1.90 Total: 39.76 kcal Total: -89.03 -1.54 -90.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481720204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.045 kcal (2) G-P(sol) polarization free energy of solvation -89.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds