Wall clock time and date at job start Tue Mar 31 2020 18:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99880 * 2 1 4 4 O 1.21279 * 119.99757 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00058 * 0.02562 * 3 2 1 6 6 N 1.46497 * 109.46849 * 179.97438 * 5 3 2 7 7 C 1.36880 * 126.39547 * 90.00146 * 6 5 3 8 8 C 1.34678 * 106.81672 * 179.97438 * 7 6 5 9 9 N 1.34127 * 108.01747 * 359.97438 * 8 7 6 10 10 C 1.30503 * 109.25744 * 359.72571 * 9 8 7 11 11 C 1.46495 * 119.99972 * 180.02562 * 2 1 3 12 12 H 1.09005 * 110.76541 * 183.20098 * 11 2 1 13 13 C 1.55398 * 110.84661 * 306.46512 * 11 2 1 14 14 C 1.54916 * 101.74107 * 153.86291 * 13 11 2 15 15 N 1.47843 * 104.79337 * 323.02060 * 14 13 11 16 16 C 1.46904 * 110.99640 * 146.36598 * 15 14 13 17 17 C 1.50701 * 109.47311 * 69.15748 * 16 15 14 18 18 O 1.21295 * 120.00077 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00217 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00192 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99526 * 359.97438 * 20 19 17 22 22 C 1.38947 * 119.99946 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00209 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00111 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47143 * 90.00162 * 24 22 20 26 26 H 1.48496 * 109.47627 * 210.00027 * 24 22 20 27 27 H 1.48503 * 109.47563 * 330.00634 * 24 22 20 28 28 C 1.47439 * 108.57210 * 24.09642 * 15 14 13 29 29 H 1.08996 * 109.47359 * 269.99690 * 1 2 3 30 30 H 1.09001 * 109.47212 * 30.00102 * 1 2 3 31 31 H 1.09002 * 109.46844 * 149.99881 * 1 2 3 32 32 H 1.08996 * 109.46675 * 299.99386 * 5 3 2 33 33 H 1.08996 * 109.47082 * 59.99867 * 5 3 2 34 34 H 1.07998 * 126.59597 * 359.95901 * 7 6 5 35 35 H 1.08000 * 125.98874 * 179.97438 * 8 7 6 36 36 H 1.08002 * 125.64798 * 180.29608 * 10 9 8 37 37 H 1.08995 * 110.87020 * 35.77947 * 13 11 2 38 38 H 1.08997 * 111.05714 * 272.03179 * 13 11 2 39 39 H 1.08996 * 110.37177 * 204.18825 * 14 13 11 40 40 H 1.09002 * 110.37261 * 81.84838 * 14 13 11 41 41 H 1.09006 * 109.46849 * 189.15426 * 16 15 14 42 42 H 1.08995 * 109.46868 * 309.15239 * 16 15 14 43 43 H 0.97002 * 119.99546 * 359.97438 * 19 17 16 44 44 H 0.96998 * 120.00234 * 180.02562 * 23 22 20 45 45 H 1.09002 * 109.88998 * 118.41597 * 28 15 14 46 46 H 1.09003 * 109.88733 * 239.44258 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 7 2.3374 3.5858 0.0011 7 6 2.8652 4.2036 -1.1004 8 6 3.6894 5.1682 -0.6487 9 7 3.6649 5.1404 0.6921 10 6 2.8525 4.1991 1.0883 11 6 2.1975 -1.2687 -0.0006 12 1 3.2720 -1.0946 0.0564 13 6 1.7265 -2.1797 1.1670 14 6 2.0513 -3.5908 0.6164 15 7 1.7497 -3.5109 -0.8287 16 6 2.6661 -4.3566 -1.6052 17 6 2.3700 -5.8074 -1.3250 18 8 1.4831 -6.1075 -0.5539 19 7 3.0912 -6.7716 -1.9304 20 6 2.8222 -8.0915 -1.6751 21 1 2.0325 -8.3585 -0.9885 22 6 3.5662 -9.0854 -2.2989 23 7 3.3080 -10.3505 -2.0546 24 14 4.9325 -8.6234 -3.4860 25 1 6.2091 -8.4818 -2.7405 26 1 5.0751 -9.6852 -4.5143 27 1 4.5999 -7.3358 -4.1468 28 6 1.8453 -2.1016 -1.2511 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 0.7585 2.5302 -0.8892 33 1 0.7591 2.5298 0.8908 34 1 2.6603 3.9636 -2.1333 35 1 4.2684 5.8454 -1.2591 36 1 2.6312 3.9500 2.1156 37 1 0.6567 -2.0654 1.3414 38 1 2.2924 -1.9754 2.0759 39 1 1.4199 -4.3394 1.0951 40 1 3.1043 -3.8257 0.7719 41 1 2.5316 -4.1571 -2.6684 42 1 3.6945 -4.1342 -1.3210 43 1 3.8007 -6.5316 -2.5469 44 1 3.8277 -11.0444 -2.4898 45 1 2.6276 -1.9918 -2.0022 46 1 0.8903 -1.7713 -1.6597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494876395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:34 Heat of formation + Delta-G solvation = 30.408526 kcal Electronic energy + Delta-G solvation = -28421.774982 eV Core-core repulsion = 24348.932612 eV Total energy + Delta-G solvation = -4072.842370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.40795 -40.61061 -39.11055 -37.79285 -35.64596 -34.40407 -33.94028 -31.82329 -31.42971 -29.83203 -29.19171 -28.06839 -27.57218 -26.40435 -24.09249 -22.23816 -21.66428 -21.24270 -21.03223 -19.63838 -19.40465 -18.42419 -18.13138 -17.74901 -16.76574 -16.26064 -15.88651 -15.73070 -15.14801 -14.77281 -14.66223 -14.65170 -14.31858 -14.10246 -13.84042 -13.71334 -13.52739 -13.44203 -13.12665 -13.01381 -12.88582 -12.73080 -12.62723 -12.22719 -11.98934 -11.77076 -11.66751 -11.29601 -11.12806 -10.85745 -10.70541 -10.61497 -10.29484 -9.99847 -9.83581 -9.58216 -9.18976 -8.79919 -8.63530 -8.20666 -8.06220 -6.33117 -3.84568 1.60354 1.95840 2.17167 2.60570 2.93175 3.00854 3.05158 3.13604 3.71124 3.76641 3.91481 4.02428 4.08426 4.31762 4.36109 4.41472 4.47373 4.54596 4.57300 4.72367 4.87438 4.96361 5.08468 5.13746 5.17466 5.21220 5.24681 5.37854 5.43734 5.58308 5.61204 5.67664 5.73622 5.86924 5.87139 5.96113 6.06301 6.28840 6.41875 6.71709 6.84627 7.01274 7.04056 7.54757 7.56049 7.77640 8.11904 8.57992 8.93074 9.40315 9.80946 10.79954 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024455 B = 0.002008 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.684359 B =13940.855746 C =14636.396631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.599 5.599 3 C 0.495 3.505 4 O -0.520 6.520 5 C 0.089 3.911 6 N -0.448 5.448 7 C -0.047 4.047 8 C -0.029 4.029 9 N -0.494 5.494 10 C 0.192 3.808 11 C 0.118 3.882 12 H 0.107 0.893 13 C -0.138 4.138 14 C 0.053 3.947 15 N -0.501 5.501 16 C 0.036 3.964 17 C 0.453 3.547 18 O -0.559 6.559 19 N -0.592 5.592 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.270 1.270 28 C 0.032 3.968 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.172 0.828 35 H 0.170 0.830 36 H 0.202 0.798 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.046 0.954 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.059 0.941 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.446 27.906 1.881 28.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.333 5.333 3 C 0.281 3.719 4 O -0.395 6.395 5 C -0.038 4.038 6 N -0.131 5.131 7 C -0.179 4.179 8 C -0.176 4.176 9 N -0.212 5.212 10 C -0.090 4.090 11 C 0.014 3.986 12 H 0.125 0.875 13 C -0.176 4.176 14 C -0.075 4.075 15 N -0.225 5.225 16 C -0.095 4.095 17 C 0.239 3.761 18 O -0.441 6.441 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.097 4.097 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.190 0.810 35 H 0.187 0.813 36 H 0.219 0.781 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.064 0.936 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.202 0.798 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.490 27.689 2.774 28.364 hybrid contribution 1.427 -0.308 -1.557 2.134 sum -4.063 27.381 1.217 27.707 Atomic orbital electron populations 1.21960 0.78847 1.04135 1.02708 1.47752 1.07282 1.05321 1.72931 1.20759 0.88474 0.85403 0.77297 1.90805 1.13475 1.86785 1.48387 1.21731 0.91106 0.83858 1.07071 1.45031 1.34980 1.25519 1.07573 1.22686 1.03277 0.99410 0.92526 1.22274 1.02609 1.01450 0.91229 1.70293 1.18517 1.20150 1.12204 1.24964 0.96798 0.93782 0.93442 1.22494 0.97884 0.82091 0.96125 0.87470 1.23146 1.02405 0.94729 0.97357 1.23032 1.00439 0.96289 0.87730 1.63296 1.50801 1.04716 1.03666 1.22181 0.94459 0.93807 0.99101 1.19585 0.85364 0.85866 0.85313 1.90545 1.32842 1.82754 1.37936 1.42211 1.32648 1.06800 1.41490 1.19413 1.18828 0.78838 1.26194 0.86270 1.25034 0.98122 0.95023 0.97994 1.69615 1.40452 0.98957 1.43097 0.86683 0.82687 0.78628 0.81448 1.19657 1.20153 1.19517 1.23201 1.01860 0.88313 0.96313 0.91725 0.91004 0.89297 0.85941 0.85746 0.81045 0.81323 0.78111 0.90031 0.90514 0.88123 0.93554 0.89222 0.93060 0.79754 0.91610 0.92287 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 8.81 59.85 0.53 0.79 16 2 N -0.60 -4.45 2.88 -171.69 -0.50 -4.94 16 3 C 0.50 4.23 7.74 -10.98 -0.09 4.14 16 4 O -0.52 -7.04 15.81 5.56 0.09 -6.95 16 5 C 0.09 0.42 5.18 -5.19 -0.03 0.39 16 6 N -0.45 -3.58 2.24 -119.87 -0.27 -3.85 16 7 C -0.05 -0.40 11.58 -16.56 -0.19 -0.59 16 8 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 9 N -0.49 -5.84 11.25 -14.66 -0.16 -6.00 16 10 C 0.19 1.79 12.56 -90.37 -1.14 0.65 16 11 C 0.12 1.19 3.36 -65.97 -0.22 0.97 16 12 H 0.11 1.30 7.01 -51.93 -0.36 0.93 16 13 C -0.14 -1.40 6.62 -24.45 -0.16 -1.57 16 14 C 0.05 0.74 5.75 -2.29 -0.01 0.73 16 15 N -0.50 -7.39 4.86 -232.68 -1.13 -8.52 16 16 C 0.04 0.59 5.05 -4.97 -0.03 0.56 16 17 C 0.45 10.05 7.58 -10.99 -0.08 9.96 16 18 O -0.56 -14.49 14.61 5.54 0.08 -14.41 16 19 N -0.59 -13.91 5.09 -10.96 -0.06 -13.97 16 20 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 21 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.57 13.96 55.50 0.77 -24.80 16 24 Si 0.88 19.28 27.74 -169.99 -4.71 14.57 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 28 C 0.03 0.36 6.40 -2.84 -0.02 0.34 16 29 H 0.06 0.19 8.08 -51.93 -0.42 -0.23 16 30 H 0.07 0.09 6.44 -51.93 -0.33 -0.25 16 31 H 0.09 0.44 6.54 -51.93 -0.34 0.10 16 32 H 0.12 0.25 7.40 -51.93 -0.38 -0.13 16 33 H 0.12 0.22 8.11 -51.93 -0.42 -0.20 16 34 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.20 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.08 0.75 7.07 -51.93 -0.37 0.38 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 1.68 7.38 -51.93 -0.38 1.30 16 40 H 0.05 0.67 7.62 -51.93 -0.40 0.28 16 41 H 0.09 1.28 8.03 -51.93 -0.42 0.87 16 42 H 0.05 0.75 7.85 -51.93 -0.41 0.34 16 43 H 0.37 7.67 5.76 -40.82 -0.24 7.43 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.06 0.65 7.55 -51.93 -0.39 0.25 16 46 H 0.08 0.81 6.39 -51.93 -0.33 0.48 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -38.05 376.57 -8.55 -46.59 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.44 Total: 8.35 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -1.89 Total: 8.26 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -1.34 Total: -62.07 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.17 Total: -21.37 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.05 -8.55 -46.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494876395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.001 kcal (2) G-P(sol) polarization free energy of solvation -38.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds