Wall clock time and date at job start Tue Mar 31 2020 18:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99880 * 2 1 4 4 O 1.21279 * 119.99757 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00058 * 0.02562 * 3 2 1 6 6 N 1.46497 * 109.46849 * 179.97438 * 5 3 2 7 7 C 1.36880 * 126.39547 * 90.00146 * 6 5 3 8 8 C 1.34678 * 106.81672 * 179.97438 * 7 6 5 9 9 N 1.34127 * 108.01747 * 359.97438 * 8 7 6 10 10 C 1.30503 * 109.25744 * 359.72571 * 9 8 7 11 11 C 1.46495 * 119.99972 * 180.02562 * 2 1 3 12 12 H 1.09005 * 110.76541 * 183.20098 * 11 2 1 13 13 C 1.55398 * 110.84661 * 306.46512 * 11 2 1 14 14 C 1.54916 * 101.74107 * 153.86291 * 13 11 2 15 15 N 1.47843 * 104.79337 * 323.02060 * 14 13 11 16 16 C 1.46904 * 110.99640 * 146.36598 * 15 14 13 17 17 C 1.50701 * 109.47311 * 69.15748 * 16 15 14 18 18 O 1.21295 * 120.00077 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00217 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00192 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99526 * 359.97438 * 20 19 17 22 22 C 1.38947 * 119.99946 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00209 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00111 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47143 * 90.00162 * 24 22 20 26 26 H 1.48496 * 109.47627 * 210.00027 * 24 22 20 27 27 H 1.48503 * 109.47563 * 330.00634 * 24 22 20 28 28 C 1.47439 * 108.57210 * 24.09642 * 15 14 13 29 29 H 1.08996 * 109.47359 * 269.99690 * 1 2 3 30 30 H 1.09001 * 109.47212 * 30.00102 * 1 2 3 31 31 H 1.09002 * 109.46844 * 149.99881 * 1 2 3 32 32 H 1.08996 * 109.46675 * 299.99386 * 5 3 2 33 33 H 1.08996 * 109.47082 * 59.99867 * 5 3 2 34 34 H 1.07998 * 126.59597 * 359.95901 * 7 6 5 35 35 H 1.08000 * 125.98874 * 179.97438 * 8 7 6 36 36 H 1.08002 * 125.64798 * 180.29608 * 10 9 8 37 37 H 1.08995 * 110.87020 * 35.77947 * 13 11 2 38 38 H 1.08997 * 111.05714 * 272.03179 * 13 11 2 39 39 H 1.08996 * 110.37177 * 204.18825 * 14 13 11 40 40 H 1.09002 * 110.37261 * 81.84838 * 14 13 11 41 41 H 1.09006 * 109.46849 * 189.15426 * 16 15 14 42 42 H 1.08995 * 109.46868 * 309.15239 * 16 15 14 43 43 H 0.97002 * 119.99546 * 359.97438 * 19 17 16 44 44 H 0.96998 * 120.00234 * 180.02562 * 23 22 20 45 45 H 1.09002 * 109.88998 * 118.41597 * 28 15 14 46 46 H 1.09003 * 109.88733 * 239.44258 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 7 2.3374 3.5858 0.0011 7 6 2.8652 4.2036 -1.1004 8 6 3.6894 5.1682 -0.6487 9 7 3.6649 5.1404 0.6921 10 6 2.8525 4.1991 1.0883 11 6 2.1975 -1.2687 -0.0006 12 1 3.2720 -1.0946 0.0564 13 6 1.7265 -2.1797 1.1670 14 6 2.0513 -3.5908 0.6164 15 7 1.7497 -3.5109 -0.8287 16 6 2.6661 -4.3566 -1.6052 17 6 2.3700 -5.8074 -1.3250 18 8 1.4831 -6.1075 -0.5539 19 7 3.0912 -6.7716 -1.9304 20 6 2.8222 -8.0915 -1.6751 21 1 2.0325 -8.3585 -0.9885 22 6 3.5662 -9.0854 -2.2989 23 7 3.3080 -10.3505 -2.0546 24 14 4.9325 -8.6234 -3.4860 25 1 6.2091 -8.4818 -2.7405 26 1 5.0751 -9.6852 -4.5143 27 1 4.5999 -7.3358 -4.1468 28 6 1.8453 -2.1016 -1.2511 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 0.7585 2.5302 -0.8892 33 1 0.7591 2.5298 0.8908 34 1 2.6603 3.9636 -2.1333 35 1 4.2684 5.8454 -1.2591 36 1 2.6312 3.9500 2.1156 37 1 0.6567 -2.0654 1.3414 38 1 2.2924 -1.9754 2.0759 39 1 1.4199 -4.3394 1.0951 40 1 3.1043 -3.8257 0.7719 41 1 2.5316 -4.1571 -2.6684 42 1 3.6945 -4.1342 -1.3210 43 1 3.8007 -6.5316 -2.5469 44 1 3.8277 -11.0444 -2.4898 45 1 2.6276 -1.9918 -2.0022 46 1 0.8903 -1.7713 -1.6597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494876395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:33 Heat of formation + Delta-G solvation = 1.219756 kcal Electronic energy + Delta-G solvation = -28423.040702 eV Core-core repulsion = 24348.932612 eV Total energy + Delta-G solvation = -4074.108090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.99776 -41.38111 -40.44665 -39.14475 -36.48193 -35.89476 -34.97029 -33.77418 -32.58036 -30.46628 -30.01748 -28.94401 -28.26715 -27.42576 -25.78927 -22.94899 -22.37466 -22.27571 -21.71120 -21.26207 -20.28620 -20.24094 -18.76375 -18.36633 -17.82780 -17.24619 -17.05062 -16.72738 -16.50359 -16.16559 -15.75992 -15.25250 -15.15719 -15.14787 -14.82696 -14.66299 -14.47808 -14.40363 -14.27502 -14.10804 -14.05373 -13.53817 -13.38866 -13.25039 -13.10030 -13.05913 -12.72056 -12.53928 -12.42462 -12.28596 -11.99337 -11.79100 -11.50503 -11.43375 -10.96779 -10.47120 -10.41083 -10.24962 -9.83726 -9.42211 -9.24682 -8.42014 -6.02443 1.00863 1.28706 1.33679 1.38738 1.42518 1.66415 1.94872 2.06688 2.21419 2.25914 2.62804 3.13742 3.18388 3.33503 3.57576 3.65835 3.79135 3.88442 3.94024 4.00133 4.11786 4.13761 4.23366 4.24512 4.31289 4.37213 4.42484 4.58691 4.59444 4.70768 4.78254 4.79320 4.88834 5.02060 5.04137 5.10892 5.28094 5.41033 5.51640 5.82323 5.83954 5.93387 6.00895 6.15781 6.32484 6.58933 6.87809 6.96998 7.14738 7.39152 7.95979 8.75475 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024455 B = 0.002008 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.684359 B =13940.855746 C =14636.396631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.593 5.593 3 C 0.494 3.506 4 O -0.578 6.578 5 C 0.092 3.908 6 N -0.448 5.448 7 C -0.044 4.044 8 C -0.061 4.061 9 N -0.540 5.540 10 C 0.182 3.818 11 C 0.127 3.873 12 H 0.086 0.914 13 C -0.122 4.122 14 C 0.050 3.950 15 N -0.520 5.520 16 C 0.047 3.953 17 C 0.453 3.547 18 O -0.604 6.604 19 N -0.594 5.594 20 C -0.325 4.325 21 H 0.057 0.943 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.962 3.038 25 H -0.259 1.259 26 H -0.275 1.275 27 H -0.232 1.232 28 C 0.038 3.962 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.199 0.801 35 H 0.178 0.822 36 H 0.226 0.774 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.388 0.612 44 H 0.279 0.721 45 H 0.065 0.935 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 30.846 0.039 31.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.325 5.325 3 C 0.282 3.718 4 O -0.457 6.457 5 C -0.033 4.033 6 N -0.130 5.130 7 C -0.176 4.176 8 C -0.207 4.207 9 N -0.259 5.259 10 C -0.100 4.100 11 C 0.022 3.978 12 H 0.104 0.896 13 C -0.161 4.161 14 C -0.078 4.078 15 N -0.244 5.244 16 C -0.084 4.084 17 C 0.240 3.760 18 O -0.487 6.487 19 N -0.236 5.236 20 C -0.454 4.454 21 H 0.075 0.925 22 C -0.214 4.214 23 N -0.575 5.575 24 Si 0.782 3.218 25 H -0.184 1.184 26 H -0.200 1.200 27 H -0.155 1.155 28 C -0.090 4.090 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.177 0.823 33 H 0.180 0.820 34 H 0.215 0.785 35 H 0.195 0.805 36 H 0.242 0.758 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.137 0.863 42 H 0.092 0.908 43 H 0.223 0.777 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.801 30.658 0.930 31.216 hybrid contribution 1.362 -1.265 -0.874 2.054 sum -4.439 29.393 0.056 29.727 Atomic orbital electron populations 1.22278 0.76286 1.05593 1.04219 1.47777 1.08631 1.04045 1.72058 1.21417 0.87920 0.86599 0.75849 1.90794 1.16141 1.87598 1.51164 1.22084 0.90155 0.80369 1.10656 1.45205 1.35084 1.25820 1.06928 1.23115 1.02217 0.98502 0.93788 1.22629 1.04038 1.02951 0.91107 1.70227 1.20224 1.22037 1.13369 1.25452 0.96334 0.93410 0.94816 1.22147 0.97136 0.83279 0.95276 0.89617 1.23021 1.03382 0.92110 0.97558 1.22908 0.99010 0.97861 0.87974 1.63215 1.50743 1.06839 1.03628 1.22097 0.95969 0.89291 1.01056 1.20813 0.83661 0.88211 0.83290 1.90530 1.34601 1.84114 1.39462 1.42053 1.33725 1.05304 1.42528 1.18987 1.18408 0.81622 1.26424 0.92491 1.26078 1.01070 0.94340 0.99894 1.69795 1.42297 1.00621 1.44738 0.85399 0.78126 0.79946 0.78282 1.18408 1.19966 1.15528 1.23223 1.03077 0.85969 0.96775 0.90229 0.87310 0.90136 0.82284 0.82049 0.78456 0.80517 0.75813 0.88593 0.89923 0.91671 0.94552 0.86263 0.90752 0.77658 0.91181 0.91639 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.18 8.81 127.77 1.13 1.31 16 2 N -0.59 -6.69 2.88 -815.48 -2.35 -9.04 16 3 C 0.49 6.83 7.74 87.66 0.68 7.51 16 4 O -0.58 -14.78 15.81 -3.03 -0.05 -14.83 16 5 C 0.09 0.44 5.18 85.63 0.44 0.88 16 6 N -0.45 -5.89 2.24 -533.15 -1.19 -7.08 16 7 C -0.04 -0.64 11.58 83.09 0.96 0.32 16 8 C -0.06 -1.19 11.87 83.53 0.99 -0.20 16 9 N -0.54 -12.60 11.25 -200.30 -2.25 -14.86 16 10 C 0.18 3.11 12.56 180.26 2.26 5.37 16 11 C 0.13 2.27 3.36 46.27 0.16 2.42 16 12 H 0.09 1.97 7.01 -2.38 -0.02 1.95 16 13 C -0.12 -2.31 6.62 32.07 0.21 -2.10 16 14 C 0.05 1.43 5.75 86.78 0.50 1.93 16 15 N -0.52 -14.60 4.86 -890.07 -4.33 -18.93 16 16 C 0.05 1.44 5.05 85.56 0.43 1.87 16 17 C 0.45 20.21 7.58 87.66 0.66 20.88 16 18 O -0.60 -32.69 14.61 -3.08 -0.04 -32.74 16 19 N -0.59 -27.93 5.09 -306.98 -1.56 -29.49 16 20 C -0.33 -18.97 10.16 84.04 0.85 -18.11 16 21 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 22 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 23 N -0.93 -56.20 13.96 21.66 0.30 -55.90 16 24 Si 0.96 38.90 27.74 68.60 1.90 40.80 16 25 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 27 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 28 C 0.04 0.73 6.40 86.65 0.55 1.28 16 29 H 0.08 0.08 8.08 -2.39 -0.02 0.06 16 30 H 0.11 -0.42 6.44 -2.39 -0.02 -0.44 16 31 H 0.08 0.47 6.54 -2.39 -0.02 0.45 16 32 H 0.16 -0.35 7.40 -2.39 -0.02 -0.37 16 33 H 0.16 -0.38 8.11 -2.39 -0.02 -0.40 16 34 H 0.20 1.64 8.06 -2.91 -0.02 1.61 16 35 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.23 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.10 1.54 7.07 -2.39 -0.02 1.53 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 39 H 0.06 2.29 7.38 -2.39 -0.02 2.27 16 40 H 0.04 1.07 7.62 -2.39 -0.02 1.05 16 41 H 0.12 2.98 8.03 -2.38 -0.02 2.96 16 42 H 0.07 1.97 7.85 -2.39 -0.02 1.95 16 43 H 0.39 15.20 5.76 -92.71 -0.53 14.67 16 44 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 45 H 0.07 1.21 7.55 -2.39 -0.02 1.19 16 46 H 0.10 1.60 6.39 -2.39 -0.02 1.58 16 Total: -1.00 -92.09 376.57 1.15 -90.94 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.42 Total: 28.14 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 10.31 Total: 22.98 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -11.39 Total: -135.30 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -0.09 Total: -47.57 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 1.90 Total: 40.80 kcal Total: -92.09 1.15 -90.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494876395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.162 kcal (2) G-P(sol) polarization free energy of solvation -92.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds