Wall clock time and date at job start Tue Mar 31 2020 18:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 119.99696 * 2 1 4 4 O 1.21600 * 119.99901 * 181.70906 * 3 2 1 5 5 C 1.47429 * 120.00218 * 1.70891 * 3 2 1 6 6 C 1.41291 * 126.41395 * 345.83827 * 5 3 2 7 7 N 1.30452 * 108.02491 * 179.81534 * 6 5 3 8 8 N 1.39930 * 108.89448 * 0.45494 * 7 6 5 9 9 H 0.97003 * 125.75574 * 179.67837 * 8 7 6 10 10 C 1.34268 * 108.49362 * 359.70284 * 8 7 6 11 11 C 1.46494 * 119.99981 * 179.97438 * 2 1 3 12 12 H 1.09005 * 109.46755 * 180.02562 * 11 2 1 13 13 C 1.52993 * 109.47629 * 300.00450 * 11 2 1 14 14 N 1.46899 * 109.47365 * 304.99848 * 13 11 2 15 15 C 1.46895 * 111.00176 * 179.97438 * 14 13 11 16 16 C 1.50705 * 109.46896 * 180.02562 * 15 14 13 17 17 O 1.21290 * 120.00031 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99980 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00448 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99770 * 0.02562 * 19 18 16 21 21 C 1.38944 * 120.00120 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99869 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00344 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.46940 * 90.00132 * 23 21 19 25 25 H 1.48501 * 109.47001 * 209.99908 * 23 21 19 26 26 H 1.48503 * 109.46923 * 330.00061 * 23 21 19 27 27 C 1.53000 * 109.47108 * 60.00942 * 11 2 1 28 28 C 1.53000 * 117.50436 * 128.74363 * 27 11 2 29 29 C 1.53002 * 117.50193 * 60.07709 * 27 11 2 30 30 H 1.09005 * 109.47326 * 84.05482 * 1 2 3 31 31 H 1.09005 * 109.47266 * 204.05463 * 1 2 3 32 32 H 1.08996 * 109.47884 * 324.05398 * 1 2 3 33 33 H 1.08001 * 125.98566 * 0.02562 * 6 5 3 34 34 H 1.07996 * 126.28799 * 180.02562 * 10 8 7 35 35 H 1.09002 * 109.47356 * 65.00289 * 13 11 2 36 36 H 1.09005 * 109.47187 * 184.99981 * 13 11 2 37 37 H 1.00902 * 110.99747 * 56.04140 * 14 13 11 38 38 H 1.08996 * 109.47596 * 300.00070 * 15 14 13 39 39 H 1.09000 * 109.47032 * 60.00765 * 15 14 13 40 40 H 0.97005 * 119.99874 * 359.97438 * 18 16 15 41 41 H 0.97002 * 120.00281 * 179.97438 * 22 21 19 42 42 H 1.09007 * 115.54474 * 274.41482 * 27 11 2 43 43 H 1.08999 * 117.49602 * 359.97438 * 28 27 11 44 44 H 1.08994 * 117.49912 * 145.01950 * 28 27 11 45 45 H 1.08998 * 117.49914 * 214.98176 * 29 27 11 46 46 H 1.09003 * 117.49479 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3544 1.1675 -0.0314 5 6 1.4021 2.4437 0.0381 6 6 0.0213 2.6226 -0.2019 7 7 -0.2499 3.8920 -0.0713 8 7 0.9289 4.5772 0.2433 9 1 1.0072 5.5330 0.3892 10 6 1.9334 3.6887 0.3089 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0694 0.0009 13 6 1.8279 -2.0705 1.2500 14 7 2.0713 -1.2533 2.4462 15 6 1.7262 -1.9923 3.6679 16 6 1.9879 -1.1236 4.8712 17 8 2.4190 0.0007 4.7254 18 7 1.7429 -1.5960 6.1095 19 6 1.9815 -0.8060 7.2043 20 1 2.3653 0.1951 7.0744 21 6 1.7294 -1.2933 8.4808 22 7 1.9576 -0.5358 9.5302 23 14 1.0661 -3.0251 8.7055 24 1 2.1993 -3.9760 8.8357 25 1 0.2306 -3.0798 9.9319 26 1 0.2414 -3.3959 7.5276 27 6 1.8280 -2.0714 -1.2484 28 6 2.9742 -2.6066 -2.1090 29 6 2.1228 -1.4368 -2.6090 30 1 -0.3634 0.1064 -1.0222 31 1 -0.3634 -0.9385 0.4189 32 1 -0.3635 0.8319 0.6032 33 1 -0.6863 1.8444 -0.4468 34 1 2.9669 3.9078 0.5327 35 1 0.7741 -2.3461 1.2064 36 1 2.4377 -2.9728 1.2963 37 1 1.5666 -0.3809 2.3968 38 1 0.6717 -2.2668 3.6409 39 1 2.3350 -2.8942 3.7311 40 1 1.3978 -2.4950 6.2261 41 1 1.7813 -0.8758 10.4214 42 1 0.9324 -2.6870 -1.1637 43 1 3.9916 -2.3864 -1.7856 44 1 2.8326 -3.5740 -2.5908 45 1 1.4215 -1.6351 -3.4195 46 1 2.5797 -0.4471 -2.6143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506997494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:43 Heat of formation + Delta-G solvation = 63.138682 kcal Electronic energy + Delta-G solvation = -29202.523138 eV Core-core repulsion = 25131.100054 eV Total energy + Delta-G solvation = -4071.423084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.60012 -39.89507 -38.38987 -37.57007 -35.76332 -34.68124 -33.82156 -32.06440 -31.62717 -30.69825 -29.48016 -27.32923 -26.41443 -24.13102 -23.33015 -22.48816 -22.13675 -21.90052 -20.32940 -19.52063 -19.29428 -18.36451 -18.29425 -16.75289 -16.27615 -16.16313 -15.60961 -15.39618 -15.22042 -14.95389 -14.80494 -14.73006 -14.23574 -13.88973 -13.77693 -13.40353 -13.25945 -13.13719 -12.95273 -12.62113 -12.27090 -11.91728 -11.86776 -11.77969 -11.70189 -11.65884 -11.33859 -11.23896 -11.08186 -10.57998 -10.56838 -10.42285 -10.01961 -9.95293 -9.69740 -9.54413 -8.98713 -8.74206 -8.47716 -8.15771 -8.05497 -6.28615 -3.79812 1.43483 2.02480 2.51449 2.86806 3.03595 3.08486 3.16173 3.41847 3.73215 3.78126 4.00723 4.12304 4.44015 4.57745 4.66925 4.71059 4.80751 4.84490 4.91776 4.94086 5.02962 5.17431 5.18758 5.22810 5.31406 5.32795 5.40661 5.46831 5.51655 5.62335 5.68359 5.70239 5.82837 5.84099 5.96149 5.97569 6.09188 6.16909 6.53323 6.88385 7.14746 7.26914 7.40215 7.61010 7.64559 8.17561 8.30446 8.63084 8.98067 9.45390 9.86754 10.84703 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.003155 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.018446 B = 8874.070000 C =10665.792656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.602 5.602 3 C 0.600 3.400 4 O -0.539 6.539 5 C -0.289 4.289 6 C 0.065 3.935 7 N -0.299 5.299 8 N -0.464 5.464 9 H 0.444 0.556 10 C 0.137 3.863 11 C 0.175 3.825 12 H 0.112 0.888 13 C 0.053 3.947 14 N -0.663 5.663 15 C 0.049 3.951 16 C 0.450 3.550 17 O -0.561 6.561 18 N -0.592 5.592 19 C -0.303 4.303 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.883 5.883 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.165 4.165 28 C -0.170 4.170 29 C -0.168 4.168 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.205 0.795 34 H 0.192 0.808 35 H 0.029 0.971 36 H 0.084 0.916 37 H 0.351 0.649 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.642 -1.294 -24.740 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.334 5.334 3 C 0.390 3.610 4 O -0.416 6.416 5 C -0.304 4.304 6 C -0.123 4.123 7 N -0.120 5.120 8 N -0.169 5.169 9 H 0.289 0.711 10 C -0.016 4.016 11 C 0.072 3.928 12 H 0.130 0.870 13 C -0.077 4.077 14 N -0.296 5.296 15 C -0.084 4.084 16 C 0.236 3.764 17 O -0.443 6.443 18 N -0.232 5.232 19 C -0.432 4.432 20 H 0.136 0.864 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.185 4.185 28 C -0.207 4.207 29 C -0.205 4.205 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.221 0.779 34 H 0.209 0.791 35 H 0.047 0.953 36 H 0.102 0.898 37 H 0.171 0.829 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.203 0.797 41 H 0.083 0.917 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.964 0.238 -24.608 25.105 hybrid contribution -1.017 -1.597 0.602 1.987 sum -5.981 -1.359 -24.006 24.777 Atomic orbital electron populations 1.22358 0.80593 1.03813 1.01587 1.47474 1.06352 1.05418 1.74193 1.17170 0.86333 0.82300 0.75201 1.90777 1.13295 1.87039 1.50468 1.20246 0.94379 0.94250 1.21517 1.24955 0.95330 0.94326 0.97671 1.77162 1.05471 1.06656 1.22751 1.46236 1.05620 1.10467 1.54574 0.71140 1.23085 0.95238 0.88794 0.94436 1.20667 0.98838 0.81772 0.91528 0.86964 1.22284 0.98895 0.96750 0.89810 1.59965 1.63534 1.06674 0.99450 1.21708 0.98907 0.97424 0.90391 1.19733 0.84416 0.88630 0.83636 1.90578 1.48207 1.20114 1.85375 1.42203 1.59723 1.15286 1.05975 1.19429 1.41183 0.99930 0.82680 0.86355 1.25034 0.97843 0.98184 0.95152 1.69626 1.47916 1.36436 0.98343 0.86663 0.79544 0.84630 0.78477 1.19603 1.20242 1.19558 1.22590 1.00669 1.03300 0.91920 1.23000 0.96275 0.98215 1.03235 1.22838 1.03322 0.98094 0.96290 0.92149 0.90953 0.89776 0.77913 0.79125 0.95292 0.89779 0.82910 0.93996 0.89440 0.79737 0.91665 0.87670 0.88393 0.88736 0.89023 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 8.06 59.85 0.48 0.95 16 2 N -0.60 -6.68 1.71 -175.21 -0.30 -6.98 16 3 C 0.60 8.33 7.66 -12.52 -0.10 8.23 16 4 O -0.54 -9.39 16.26 5.28 0.09 -9.30 16 5 C -0.29 -3.47 5.90 -105.07 -0.62 -4.09 16 6 C 0.06 0.66 9.81 -16.98 -0.17 0.50 16 7 N -0.30 -3.33 12.63 30.86 0.39 -2.94 16 8 N -0.46 -4.24 7.29 30.85 0.22 -4.02 16 9 H 0.44 2.51 8.96 -182.72 -1.64 0.87 16 10 C 0.14 1.44 11.85 -16.56 -0.20 1.25 16 11 C 0.18 1.96 2.52 -67.94 -0.17 1.79 16 12 H 0.11 1.59 6.66 -51.93 -0.35 1.25 16 13 C 0.05 0.62 4.98 -3.83 -0.02 0.60 16 14 N -0.66 -10.76 6.12 -115.06 -0.70 -11.46 16 15 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 16 C 0.45 10.49 7.82 -10.98 -0.09 10.40 16 17 O -0.56 -15.59 15.78 5.55 0.09 -15.50 16 18 N -0.59 -14.34 5.09 -10.96 -0.06 -14.39 16 19 C -0.30 -8.72 10.16 -14.93 -0.15 -8.88 16 20 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -26.09 13.96 55.50 0.77 -25.32 16 23 Si 0.88 19.53 27.74 -169.99 -4.72 14.82 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 27 C -0.17 -1.39 4.83 -90.62 -0.44 -1.83 16 28 C -0.17 -1.37 10.18 -26.69 -0.27 -1.65 16 29 C -0.17 -1.41 10.13 -26.69 -0.27 -1.68 16 30 H 0.06 0.35 7.57 -51.93 -0.39 -0.04 16 31 H 0.07 0.51 6.54 -51.93 -0.34 0.17 16 32 H 0.08 0.68 4.91 -51.93 -0.26 0.42 16 33 H 0.20 1.46 4.69 -52.49 -0.25 1.21 16 34 H 0.19 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.03 0.29 6.87 -51.93 -0.36 -0.07 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.35 6.13 7.56 -39.29 -0.30 5.83 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.37 7.83 5.76 -40.82 -0.24 7.60 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.11 0.76 8.11 -51.93 -0.42 0.34 16 43 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 381.17 15.07 5.74 5.74 Total: -1.00 -37.78 381.17 -8.06 -45.84 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -7.46 Total: 16.11 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -2.13 Total: 7.41 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: 0.33 Total: -65.11 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.17 Total: -24.81 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.72 Total: 14.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.78 -8.06 -45.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506997494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.974 kcal (2) G-P(sol) polarization free energy of solvation -37.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds