Wall clock time and date at job start Tue Mar 31 2020 18:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 119.99696 * 2 1 4 4 O 1.21600 * 119.99901 * 181.70906 * 3 2 1 5 5 C 1.47429 * 120.00218 * 1.70891 * 3 2 1 6 6 C 1.41291 * 126.41395 * 345.83827 * 5 3 2 7 7 N 1.30452 * 108.02491 * 179.81534 * 6 5 3 8 8 N 1.39930 * 108.89448 * 0.45494 * 7 6 5 9 9 H 0.97003 * 125.75574 * 179.67837 * 8 7 6 10 10 C 1.34268 * 108.49362 * 359.70284 * 8 7 6 11 11 C 1.46494 * 119.99981 * 179.97438 * 2 1 3 12 12 H 1.09005 * 109.46755 * 180.02562 * 11 2 1 13 13 C 1.52993 * 109.47629 * 300.00450 * 11 2 1 14 14 N 1.46899 * 109.47365 * 304.99848 * 13 11 2 15 15 C 1.46895 * 111.00176 * 179.97438 * 14 13 11 16 16 C 1.50705 * 109.46896 * 180.02562 * 15 14 13 17 17 O 1.21290 * 120.00031 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99980 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00448 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99770 * 0.02562 * 19 18 16 21 21 C 1.38944 * 120.00120 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99869 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00344 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.46940 * 90.00132 * 23 21 19 25 25 H 1.48501 * 109.47001 * 209.99908 * 23 21 19 26 26 H 1.48503 * 109.46923 * 330.00061 * 23 21 19 27 27 C 1.53000 * 109.47108 * 60.00942 * 11 2 1 28 28 C 1.53000 * 117.50436 * 128.74363 * 27 11 2 29 29 C 1.53002 * 117.50193 * 60.07709 * 27 11 2 30 30 H 1.09005 * 109.47326 * 84.05482 * 1 2 3 31 31 H 1.09005 * 109.47266 * 204.05463 * 1 2 3 32 32 H 1.08996 * 109.47884 * 324.05398 * 1 2 3 33 33 H 1.08001 * 125.98566 * 0.02562 * 6 5 3 34 34 H 1.07996 * 126.28799 * 180.02562 * 10 8 7 35 35 H 1.09002 * 109.47356 * 65.00289 * 13 11 2 36 36 H 1.09005 * 109.47187 * 184.99981 * 13 11 2 37 37 H 1.00902 * 110.99747 * 56.04140 * 14 13 11 38 38 H 1.08996 * 109.47596 * 300.00070 * 15 14 13 39 39 H 1.09000 * 109.47032 * 60.00765 * 15 14 13 40 40 H 0.97005 * 119.99874 * 359.97438 * 18 16 15 41 41 H 0.97002 * 120.00281 * 179.97438 * 22 21 19 42 42 H 1.09007 * 115.54474 * 274.41482 * 27 11 2 43 43 H 1.08999 * 117.49602 * 359.97438 * 28 27 11 44 44 H 1.08994 * 117.49912 * 145.01950 * 28 27 11 45 45 H 1.08998 * 117.49914 * 214.98176 * 29 27 11 46 46 H 1.09003 * 117.49479 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3544 1.1675 -0.0314 5 6 1.4021 2.4437 0.0381 6 6 0.0213 2.6226 -0.2019 7 7 -0.2499 3.8920 -0.0713 8 7 0.9289 4.5772 0.2433 9 1 1.0072 5.5330 0.3892 10 6 1.9334 3.6887 0.3089 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0694 0.0009 13 6 1.8279 -2.0705 1.2500 14 7 2.0713 -1.2533 2.4462 15 6 1.7262 -1.9923 3.6679 16 6 1.9879 -1.1236 4.8712 17 8 2.4190 0.0007 4.7254 18 7 1.7429 -1.5960 6.1095 19 6 1.9815 -0.8060 7.2043 20 1 2.3653 0.1951 7.0744 21 6 1.7294 -1.2933 8.4808 22 7 1.9576 -0.5358 9.5302 23 14 1.0661 -3.0251 8.7055 24 1 2.1993 -3.9760 8.8357 25 1 0.2306 -3.0798 9.9319 26 1 0.2414 -3.3959 7.5276 27 6 1.8280 -2.0714 -1.2484 28 6 2.9742 -2.6066 -2.1090 29 6 2.1228 -1.4368 -2.6090 30 1 -0.3634 0.1064 -1.0222 31 1 -0.3634 -0.9385 0.4189 32 1 -0.3635 0.8319 0.6032 33 1 -0.6863 1.8444 -0.4468 34 1 2.9669 3.9078 0.5327 35 1 0.7741 -2.3461 1.2064 36 1 2.4377 -2.9728 1.2963 37 1 1.5666 -0.3809 2.3968 38 1 0.6717 -2.2668 3.6409 39 1 2.3350 -2.8942 3.7311 40 1 1.3978 -2.4950 6.2261 41 1 1.7813 -0.8758 10.4214 42 1 0.9324 -2.6870 -1.1637 43 1 3.9916 -2.3864 -1.7856 44 1 2.8326 -3.5740 -2.5908 45 1 1.4215 -1.6351 -3.4195 46 1 2.5797 -0.4471 -2.6143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506997494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:42 Heat of formation + Delta-G solvation = 32.484979 kcal Electronic energy + Delta-G solvation = -29203.852383 eV Core-core repulsion = 25131.100054 eV Total energy + Delta-G solvation = -4072.752329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.43470 -40.82258 -40.20662 -38.48974 -36.79599 -36.03788 -35.53824 -33.75087 -32.89960 -31.61844 -30.47828 -28.33350 -27.72415 -25.75033 -24.34802 -23.14446 -23.00932 -22.74897 -21.36747 -21.06961 -20.41743 -20.15717 -19.17905 -17.92453 -17.61102 -17.15484 -16.90541 -16.58954 -16.44697 -16.00136 -15.74480 -15.65402 -15.47176 -15.27756 -14.94826 -14.73589 -14.49817 -14.32768 -14.07941 -13.97461 -13.78128 -13.28295 -12.96550 -12.83977 -12.67230 -12.52553 -12.41003 -12.34240 -12.20463 -12.03895 -11.97130 -11.51498 -11.27346 -11.11732 -10.82391 -10.68202 -10.45133 -10.24921 -9.90508 -9.54082 -9.21030 -8.41413 -6.02641 0.55894 1.18214 1.30168 1.36684 1.45321 1.77128 1.96237 2.05696 2.23604 2.47007 2.71750 3.06739 3.14950 3.34648 3.65800 3.80396 3.89593 4.02136 4.02774 4.14654 4.16973 4.24612 4.33079 4.36563 4.38495 4.42866 4.50441 4.58177 4.65547 4.72627 4.79456 4.85057 4.95976 4.98980 5.09781 5.32281 5.32949 5.39087 5.52616 5.69185 5.90817 6.08560 6.19084 6.37094 6.45370 6.54336 6.60216 6.88237 7.32278 7.39789 7.97633 8.76548 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.003155 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.018446 B = 8874.070000 C =10665.792656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.595 5.595 3 C 0.591 3.409 4 O -0.591 6.591 5 C -0.316 4.316 6 C 0.074 3.926 7 N -0.321 5.321 8 N -0.452 5.452 9 H 0.457 0.543 10 C 0.133 3.867 11 C 0.175 3.825 12 H 0.072 0.928 13 C 0.057 3.943 14 N -0.690 5.690 15 C 0.064 3.936 16 C 0.446 3.554 17 O -0.617 6.617 18 N -0.590 5.590 19 C -0.330 4.330 20 H 0.051 0.949 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.228 1.228 27 C -0.155 4.155 28 C -0.169 4.169 29 C -0.168 4.168 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.233 0.767 34 H 0.201 0.799 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.340 0.660 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.391 0.609 41 H 0.279 0.721 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.117 0.883 45 H 0.113 0.887 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.609 -5.232 -26.384 28.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.326 5.326 3 C 0.382 3.618 4 O -0.473 6.473 5 C -0.331 4.331 6 C -0.113 4.113 7 N -0.142 5.142 8 N -0.158 5.158 9 H 0.305 0.695 10 C -0.021 4.021 11 C 0.072 3.928 12 H 0.090 0.910 13 C -0.072 4.072 14 N -0.323 5.323 15 C -0.068 4.068 16 C 0.234 3.766 17 O -0.501 6.501 18 N -0.231 5.231 19 C -0.459 4.459 20 H 0.069 0.931 21 C -0.215 4.215 22 N -0.577 5.577 23 Si 0.787 3.213 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.151 1.151 27 C -0.174 4.174 28 C -0.207 4.207 29 C -0.205 4.205 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.249 0.751 34 H 0.218 0.782 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.159 0.841 38 H 0.099 0.901 39 H 0.133 0.867 40 H 0.226 0.774 41 H 0.089 0.911 42 H 0.152 0.848 43 H 0.098 0.902 44 H 0.135 0.865 45 H 0.131 0.869 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.978 -3.714 -26.287 27.721 hybrid contribution -0.009 -0.215 1.094 1.115 sum -7.987 -3.930 -25.193 26.719 Atomic orbital electron populations 1.22616 0.78265 1.04687 1.03463 1.47527 1.07761 1.04601 1.72741 1.17527 0.85927 0.83617 0.74725 1.90738 1.15463 1.87841 1.53246 1.20348 0.95459 0.94020 1.23229 1.25371 0.94852 0.94599 0.96474 1.77119 1.06287 1.07173 1.23607 1.46248 1.04852 1.11086 1.53662 0.69494 1.23343 0.95957 0.88967 0.93822 1.20595 0.96871 0.82186 0.93154 0.90991 1.22377 1.01050 0.96209 0.87586 1.59937 1.64418 1.07092 1.00855 1.21639 1.01736 0.96261 0.87199 1.21094 0.81917 0.88588 0.85021 1.90559 1.50060 1.23085 1.86395 1.42007 1.60268 1.15690 1.05184 1.18992 1.43126 0.98521 0.85255 0.93085 1.26159 0.97243 1.04343 0.93723 1.69816 1.48946 1.39636 0.99290 0.85328 0.79448 0.76563 0.79922 1.18221 1.19978 1.15124 1.22527 1.01632 1.02995 0.90250 1.23051 0.95416 0.99070 1.03156 1.22802 1.03765 0.96921 0.97059 0.89384 0.89164 0.90094 0.75139 0.78207 0.91990 0.88620 0.84133 0.90085 0.86673 0.77374 0.91139 0.84844 0.90163 0.86521 0.86909 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.66 8.06 127.77 1.03 1.69 16 2 N -0.60 -12.75 1.71 -826.49 -1.42 -14.17 16 3 C 0.59 17.08 7.66 86.66 0.66 17.74 16 4 O -0.59 -22.27 16.26 -4.03 -0.07 -22.34 16 5 C -0.32 -7.77 5.90 -20.15 -0.12 -7.89 16 6 C 0.07 1.45 9.81 85.65 0.84 2.29 16 7 N -0.32 -6.92 12.63 -56.27 -0.71 -7.63 16 8 N -0.45 -8.29 7.29 -56.31 -0.41 -8.70 16 9 H 0.46 5.15 8.96 -213.43 -1.91 3.24 16 10 C 0.13 2.93 11.85 84.27 1.00 3.93 16 11 C 0.18 3.72 2.52 44.99 0.11 3.83 16 12 H 0.07 2.14 6.66 -2.38 -0.02 2.13 16 13 C 0.06 1.15 4.98 86.30 0.43 1.58 16 14 N -0.69 -21.34 6.12 -517.95 -3.17 -24.51 16 15 C 0.06 1.96 6.17 85.56 0.53 2.48 16 16 C 0.45 20.70 7.82 87.66 0.69 21.38 16 17 O -0.62 -35.80 15.78 -3.06 -0.05 -35.85 16 18 N -0.59 -28.18 5.09 -306.98 -1.56 -29.75 16 19 C -0.33 -19.69 10.16 84.04 0.85 -18.83 16 20 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 21 C -0.02 -0.92 5.50 84.92 0.47 -0.45 16 22 N -0.94 -57.16 13.96 21.66 0.30 -56.86 16 23 Si 0.97 38.81 27.74 68.60 1.90 40.72 16 24 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.23 -7.56 6.52 99.48 0.65 -6.91 16 27 C -0.15 -2.18 4.83 -10.79 -0.05 -2.23 16 28 C -0.17 -2.44 10.18 30.62 0.31 -2.13 16 29 C -0.17 -2.53 10.13 30.62 0.31 -2.22 16 30 H 0.09 0.68 7.57 -2.38 -0.02 0.66 16 31 H 0.09 0.87 6.54 -2.38 -0.02 0.85 16 32 H 0.08 1.13 4.91 -2.39 -0.01 1.12 16 33 H 0.23 2.81 4.69 -2.91 -0.01 2.79 16 34 H 0.20 3.82 8.06 -2.91 -0.02 3.80 16 35 H 0.06 0.88 6.87 -2.39 -0.02 0.87 16 36 H 0.10 1.73 8.14 -2.38 -0.02 1.72 16 37 H 0.34 11.71 7.56 -89.69 -0.68 11.03 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.39 15.23 5.76 -92.70 -0.53 14.70 16 41 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.13 1.21 8.11 -2.38 -0.02 1.19 16 43 H 0.08 1.44 8.05 -2.39 -0.02 1.42 16 44 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -91.41 381.17 -0.24 -91.65 By element: Atomic # 1 Polarization: 48.37 SS G_CDS: -2.12 Total: 46.24 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 7.06 Total: 21.19 kcal Atomic # 7 Polarization: -134.65 SS G_CDS: -6.97 Total: -141.61 kcal Atomic # 8 Polarization: -58.07 SS G_CDS: -0.11 Total: -58.19 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.90 Total: 40.72 kcal Total: -91.41 -0.24 -91.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506997494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.138 kcal (2) G-P(sol) polarization free energy of solvation -91.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds