Wall clock time and date at job start Tue Mar 31 2020 18:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 120.00352 * 2 1 4 4 O 1.21284 * 119.99638 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.00137 * 0.02562 * 3 2 1 6 6 C 1.50693 * 109.47171 * 179.97438 * 5 3 2 7 7 N 1.30500 * 125.65142 * 305.02243 * 6 5 3 8 8 C 1.34122 * 109.25786 * 180.02562 * 7 6 5 9 9 C 1.34675 * 108.02141 * 359.97438 * 8 7 6 10 10 N 1.35047 * 125.65190 * 124.71487 * 6 5 3 11 11 H 0.97003 * 126.39627 * 0.02562 * 10 6 5 12 12 C 1.46502 * 119.99395 * 180.02562 * 2 1 3 13 13 H 1.09005 * 110.62594 * 176.89954 * 12 2 1 14 14 C 1.55422 * 110.69830 * 53.62068 * 12 2 1 15 15 C 1.54908 * 101.52379 * 205.97476 * 14 12 2 16 16 N 1.47846 * 104.89238 * 37.06612 * 15 14 12 17 17 C 1.46900 * 111.00020 * 213.57993 * 16 15 14 18 18 C 1.50691 * 109.47462 * 290.12787 * 17 16 15 19 19 O 1.21297 * 119.99984 * 359.97438 * 18 17 16 20 20 N 1.34765 * 120.00337 * 180.02562 * 18 17 16 21 21 C 1.37104 * 120.00200 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00061 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99749 * 179.97438 * 21 20 18 24 24 N 1.31417 * 119.99578 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 120.00410 * 359.97438 * 23 21 20 26 26 H 1.48512 * 109.46829 * 90.00027 * 25 23 21 27 27 H 1.48499 * 109.47263 * 209.99891 * 25 23 21 28 28 H 1.48502 * 109.47011 * 330.00623 * 25 23 21 29 29 C 1.47448 * 108.56553 * 335.84749 * 16 15 14 30 30 H 1.08997 * 109.47126 * 270.00362 * 1 2 3 31 31 H 1.09008 * 109.46690 * 29.99510 * 1 2 3 32 32 H 1.08993 * 109.47536 * 149.99557 * 1 2 3 33 33 H 1.08999 * 109.46778 * 299.99688 * 5 3 2 34 34 H 1.09002 * 109.47058 * 59.99006 * 5 3 2 35 35 H 1.08007 * 125.99138 * 179.97438 * 8 7 6 36 36 H 1.07995 * 126.58882 * 180.02562 * 9 8 7 37 37 H 1.08998 * 111.10859 * 87.90629 * 14 12 2 38 38 H 1.08998 * 111.00401 * 323.99747 * 14 12 2 39 39 H 1.09002 * 110.37460 * 278.18013 * 15 14 12 40 40 H 1.08999 * 110.37548 * 155.95084 * 15 14 12 41 41 H 1.09009 * 109.46655 * 50.12373 * 17 16 15 42 42 H 1.09004 * 109.47038 * 170.12020 * 17 16 15 43 43 H 0.97003 * 120.00380 * 359.97438 * 20 18 17 44 44 H 0.96995 * 119.99722 * 180.02562 * 24 23 21 45 45 H 1.08999 * 109.88737 * 120.39623 * 29 16 15 46 46 H 1.09000 * 109.88899 * 241.58505 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1670 0.0005 5 6 1.3856 2.4723 0.0006 6 6 2.3649 3.6176 0.0011 7 7 3.3217 3.7998 0.8696 8 6 3.9925 4.9194 0.5604 9 6 3.4303 5.4509 -0.5419 10 7 2.4015 4.6224 -0.9005 11 1 1.8075 4.7372 -1.6588 12 6 2.1974 -1.2688 -0.0006 13 1 3.2716 -1.0921 -0.0557 14 6 1.7251 -2.1752 -1.1715 15 6 2.0534 -3.5860 -0.6226 16 7 1.7520 -3.5110 0.8228 17 6 2.6703 -4.3572 1.5967 18 6 2.3654 -5.8079 1.3258 19 8 1.4709 -6.1075 0.5633 20 7 3.0860 -6.7724 1.9313 21 6 2.8083 -8.0923 1.6852 22 1 2.0124 -8.3590 1.0057 23 6 3.5517 -9.0867 2.3092 24 7 3.2859 -10.3518 2.0728 25 14 4.9298 -8.6253 3.4827 26 1 4.3887 -8.5108 4.8610 27 1 5.9806 -9.6741 3.4490 28 1 5.5155 -7.3241 3.0713 29 6 1.8451 -2.1026 1.2493 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 0.7586 2.5303 -0.8892 34 1 0.7591 2.5298 0.8908 35 1 4.8357 5.3238 1.1008 36 1 3.7356 6.3546 -1.0483 37 1 2.2903 -1.9686 -2.0804 38 1 0.6549 -2.0631 -1.3452 39 1 3.1068 -3.8185 -0.7791 40 1 1.4247 -4.3358 -1.1029 41 1 3.6977 -4.1409 1.3036 42 1 2.5448 -4.1519 2.6598 43 1 3.8012 -6.5329 2.5413 44 1 3.8045 -11.0459 2.5087 45 1 0.8888 -1.7745 1.6565 46 1 2.6274 -1.9936 2.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665670464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:19 Heat of formation + Delta-G solvation = 20.393955 kcal Electronic energy + Delta-G solvation = -28351.675398 eV Core-core repulsion = 24278.398763 eV Total energy + Delta-G solvation = -4073.276635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.37652 -40.39036 -38.94213 -37.65170 -35.37706 -33.88920 -32.84146 -32.60528 -31.67440 -31.07218 -28.87145 -27.74853 -27.32433 -26.29980 -24.01754 -22.09526 -21.81822 -21.10473 -20.68849 -19.35809 -19.32495 -18.31317 -18.24521 -17.51944 -16.63097 -16.05403 -15.84948 -15.56541 -15.09784 -14.75188 -14.57809 -14.45775 -14.36689 -13.99211 -13.66201 -13.53498 -13.35554 -13.28826 -12.98286 -12.86982 -12.67368 -12.52840 -12.44827 -12.09294 -11.87453 -11.61375 -11.50417 -11.19971 -11.03295 -10.67226 -10.56106 -10.32165 -10.23807 -10.03444 -9.94344 -9.52135 -8.91554 -8.74704 -8.54832 -8.14236 -7.94386 -6.27815 -3.78906 1.65244 2.35613 2.47411 2.81947 2.99406 3.06251 3.10332 3.18216 3.78642 3.89959 4.00862 4.13829 4.26767 4.39657 4.52582 4.69303 4.74069 4.81673 4.84622 4.86975 5.00967 5.09901 5.16011 5.23688 5.25727 5.33765 5.34866 5.46012 5.57833 5.70533 5.72773 5.74355 5.85005 5.89489 5.97280 6.06534 6.29872 6.39261 6.43284 6.94102 7.09252 7.13975 7.17889 7.62211 7.82142 7.93547 8.17972 8.64223 8.98978 9.46446 9.87936 10.85382 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024864 B = 0.001999 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.841537 B =14000.359227 C =14765.119645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.606 5.606 3 C 0.518 3.482 4 O -0.513 6.513 5 C -0.052 4.052 6 C 0.215 3.785 7 N -0.459 5.459 8 C -0.026 4.026 9 C -0.056 4.056 10 N -0.567 5.567 11 H 0.417 0.583 12 C 0.121 3.879 13 H 0.107 0.893 14 C -0.140 4.140 15 C 0.052 3.948 16 N -0.501 5.501 17 C 0.036 3.964 18 C 0.455 3.545 19 O -0.559 6.559 20 N -0.593 5.593 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.883 5.883 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.033 3.967 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.170 0.830 36 H 0.177 0.823 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.082 0.918 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 32.147 -5.770 32.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.340 5.340 3 C 0.304 3.696 4 O -0.387 6.387 5 C -0.093 4.093 6 C -0.049 4.049 7 N -0.178 5.178 8 C -0.175 4.175 9 C -0.190 4.190 10 N -0.171 5.171 11 H 0.255 0.745 12 C 0.016 3.984 13 H 0.125 0.875 14 C -0.178 4.178 15 C -0.075 4.075 16 N -0.225 5.225 17 C -0.096 4.096 18 C 0.240 3.760 19 O -0.441 6.441 20 N -0.233 5.233 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.096 4.096 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.138 0.862 35 H 0.187 0.813 36 H 0.194 0.806 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.117 0.883 41 H 0.069 0.931 42 H 0.108 0.892 43 H 0.203 0.797 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.441 31.009 -5.447 31.795 hybrid contribution 1.540 1.093 -0.148 1.894 sum -2.901 32.102 -5.594 32.715 Atomic orbital electron populations 1.21894 0.79304 1.03570 1.02537 1.47718 1.07021 1.05355 1.73951 1.20124 0.88092 0.84609 0.76776 1.90779 1.13529 1.86734 1.47690 1.19959 0.95448 0.88217 1.05712 1.22357 0.99700 0.92719 0.90151 1.70257 1.05394 1.16306 1.25872 1.22414 1.02732 0.94421 0.97889 1.22748 0.94287 0.99959 1.02008 1.43215 1.27746 1.21087 1.25004 0.74548 1.22448 0.97939 0.82291 0.95697 0.87517 1.23174 1.02322 0.94857 0.97478 1.23014 1.00281 0.96326 0.87897 1.63287 1.50654 1.05060 1.03523 1.22177 0.94474 0.93708 0.99192 1.19619 0.85353 0.85916 0.85104 1.90542 1.32428 1.82808 1.38275 1.42213 1.32183 1.06769 1.42134 1.19418 1.18295 0.78864 1.26580 0.86297 1.25032 0.98131 0.95022 0.98028 1.69623 1.40661 0.98930 1.43084 0.86681 0.82384 0.78588 0.81793 1.19610 1.20230 1.19518 1.23193 1.01926 0.88036 0.96454 0.91953 0.91182 0.89855 0.87526 0.86178 0.81302 0.80557 0.90627 0.89993 0.93665 0.88346 0.93068 0.89200 0.79747 0.91674 0.89992 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 9.19 59.85 0.55 0.95 16 2 N -0.61 -5.64 2.88 -171.67 -0.49 -6.14 16 3 C 0.52 5.57 7.66 -10.99 -0.08 5.49 16 4 O -0.51 -8.01 14.92 5.55 0.08 -7.93 16 5 C -0.05 -0.35 4.88 -29.04 -0.14 -0.49 16 6 C 0.22 2.06 6.96 -155.41 -1.08 0.97 16 7 N -0.46 -5.87 10.58 -10.82 -0.11 -5.99 16 8 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 9 C -0.06 -0.39 12.04 -16.56 -0.20 -0.59 16 10 N -0.57 -3.67 6.15 -10.23 -0.06 -3.74 16 11 H 0.42 1.13 8.96 -40.82 -0.37 0.76 16 12 C 0.12 1.39 3.36 -65.95 -0.22 1.17 16 13 H 0.11 1.45 7.00 -51.93 -0.36 1.08 16 14 C -0.14 -1.57 6.62 -24.44 -0.16 -1.73 16 15 C 0.05 0.79 5.77 -2.30 -0.01 0.78 16 16 N -0.50 -7.94 4.85 -232.68 -1.13 -9.07 16 17 C 0.04 0.62 5.07 -4.98 -0.03 0.60 16 18 C 0.45 10.41 7.58 -10.99 -0.08 10.33 16 19 O -0.56 -14.88 14.67 5.54 0.08 -14.80 16 20 N -0.59 -14.32 5.09 -10.97 -0.06 -14.37 16 21 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.12 5.50 -17.46 -0.10 1.03 16 24 N -0.88 -25.99 13.96 55.50 0.77 -25.22 16 25 Si 0.88 19.70 27.73 -169.99 -4.71 14.98 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.27 -5.55 6.52 56.52 0.37 -5.18 16 29 C 0.03 0.41 6.50 -2.83 -0.02 0.40 16 30 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 31 H 0.07 0.20 6.44 -51.92 -0.33 -0.14 16 32 H 0.08 0.52 5.99 -51.93 -0.31 0.20 16 33 H 0.11 0.31 7.40 -51.93 -0.38 -0.07 16 34 H 0.12 0.60 8.11 -51.93 -0.42 0.18 16 35 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 36 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.83 6.02 -51.93 -0.31 0.52 16 39 H 0.04 0.70 7.61 -51.93 -0.40 0.30 16 40 H 0.10 1.72 7.41 -51.93 -0.38 1.33 16 41 H 0.05 0.80 7.83 -51.92 -0.41 0.39 16 42 H 0.09 1.37 8.01 -51.93 -0.42 0.95 16 43 H 0.37 7.90 5.76 -40.82 -0.24 7.67 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.08 0.95 7.01 -51.93 -0.36 0.59 16 46 H 0.06 0.74 7.54 -51.93 -0.39 0.35 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -39.26 373.67 -8.26 -47.52 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.32 Total: 9.48 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -1.94 Total: 9.64 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: -1.08 Total: -64.53 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.16 Total: -22.73 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.71 Total: 14.98 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.26 -8.26 -47.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665670464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.915 kcal (2) G-P(sol) polarization free energy of solvation -39.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds