Wall clock time and date at job start Tue Mar 31 2020 18:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 120.00352 * 2 1 4 4 O 1.21284 * 119.99638 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.00137 * 0.02562 * 3 2 1 6 6 C 1.50693 * 109.47171 * 179.97438 * 5 3 2 7 7 N 1.30500 * 125.65142 * 305.02243 * 6 5 3 8 8 C 1.34122 * 109.25786 * 180.02562 * 7 6 5 9 9 C 1.34675 * 108.02141 * 359.97438 * 8 7 6 10 10 N 1.35047 * 125.65190 * 124.71487 * 6 5 3 11 11 H 0.97003 * 126.39627 * 0.02562 * 10 6 5 12 12 C 1.46502 * 119.99395 * 180.02562 * 2 1 3 13 13 H 1.09005 * 110.62594 * 176.89954 * 12 2 1 14 14 C 1.55422 * 110.69830 * 53.62068 * 12 2 1 15 15 C 1.54908 * 101.52379 * 205.97476 * 14 12 2 16 16 N 1.47846 * 104.89238 * 37.06612 * 15 14 12 17 17 C 1.46900 * 111.00020 * 213.57993 * 16 15 14 18 18 C 1.50691 * 109.47462 * 290.12787 * 17 16 15 19 19 O 1.21297 * 119.99984 * 359.97438 * 18 17 16 20 20 N 1.34765 * 120.00337 * 180.02562 * 18 17 16 21 21 C 1.37104 * 120.00200 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00061 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99749 * 179.97438 * 21 20 18 24 24 N 1.31417 * 119.99578 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 120.00410 * 359.97438 * 23 21 20 26 26 H 1.48512 * 109.46829 * 90.00027 * 25 23 21 27 27 H 1.48499 * 109.47263 * 209.99891 * 25 23 21 28 28 H 1.48502 * 109.47011 * 330.00623 * 25 23 21 29 29 C 1.47448 * 108.56553 * 335.84749 * 16 15 14 30 30 H 1.08997 * 109.47126 * 270.00362 * 1 2 3 31 31 H 1.09008 * 109.46690 * 29.99510 * 1 2 3 32 32 H 1.08993 * 109.47536 * 149.99557 * 1 2 3 33 33 H 1.08999 * 109.46778 * 299.99688 * 5 3 2 34 34 H 1.09002 * 109.47058 * 59.99006 * 5 3 2 35 35 H 1.08007 * 125.99138 * 179.97438 * 8 7 6 36 36 H 1.07995 * 126.58882 * 180.02562 * 9 8 7 37 37 H 1.08998 * 111.10859 * 87.90629 * 14 12 2 38 38 H 1.08998 * 111.00401 * 323.99747 * 14 12 2 39 39 H 1.09002 * 110.37460 * 278.18013 * 15 14 12 40 40 H 1.08999 * 110.37548 * 155.95084 * 15 14 12 41 41 H 1.09009 * 109.46655 * 50.12373 * 17 16 15 42 42 H 1.09004 * 109.47038 * 170.12020 * 17 16 15 43 43 H 0.97003 * 120.00380 * 359.97438 * 20 18 17 44 44 H 0.96995 * 119.99722 * 180.02562 * 24 23 21 45 45 H 1.08999 * 109.88737 * 120.39623 * 29 16 15 46 46 H 1.09000 * 109.88899 * 241.58505 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1670 0.0005 5 6 1.3856 2.4723 0.0006 6 6 2.3649 3.6176 0.0011 7 7 3.3217 3.7998 0.8696 8 6 3.9925 4.9194 0.5604 9 6 3.4303 5.4509 -0.5419 10 7 2.4015 4.6224 -0.9005 11 1 1.8075 4.7372 -1.6588 12 6 2.1974 -1.2688 -0.0006 13 1 3.2716 -1.0921 -0.0557 14 6 1.7251 -2.1752 -1.1715 15 6 2.0534 -3.5860 -0.6226 16 7 1.7520 -3.5110 0.8228 17 6 2.6703 -4.3572 1.5967 18 6 2.3654 -5.8079 1.3258 19 8 1.4709 -6.1075 0.5633 20 7 3.0860 -6.7724 1.9313 21 6 2.8083 -8.0923 1.6852 22 1 2.0124 -8.3590 1.0057 23 6 3.5517 -9.0867 2.3092 24 7 3.2859 -10.3518 2.0728 25 14 4.9298 -8.6253 3.4827 26 1 4.3887 -8.5108 4.8610 27 1 5.9806 -9.6741 3.4490 28 1 5.5155 -7.3241 3.0713 29 6 1.8451 -2.1026 1.2493 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 0.7586 2.5303 -0.8892 34 1 0.7591 2.5298 0.8908 35 1 4.8357 5.3238 1.1008 36 1 3.7356 6.3546 -1.0483 37 1 2.2903 -1.9686 -2.0804 38 1 0.6549 -2.0631 -1.3452 39 1 3.1068 -3.8185 -0.7791 40 1 1.4247 -4.3358 -1.1029 41 1 3.6977 -4.1409 1.3036 42 1 2.5448 -4.1519 2.6598 43 1 3.8012 -6.5329 2.5413 44 1 3.8045 -11.0459 2.5087 45 1 0.8888 -1.7745 1.6565 46 1 2.6274 -1.9936 2.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665670464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:18 Heat of formation + Delta-G solvation = -12.289963 kcal Electronic energy + Delta-G solvation = -28353.092679 eV Core-core repulsion = 24278.398763 eV Total energy + Delta-G solvation = -4074.693916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.95312 -41.30557 -40.38717 -39.06951 -36.36167 -35.85632 -33.77256 -33.47256 -33.28544 -32.13802 -29.84346 -28.72112 -28.13418 -27.36197 -25.78430 -22.86193 -22.44049 -22.33168 -21.40825 -21.24717 -20.24128 -20.08915 -18.81871 -18.35399 -17.74817 -17.29724 -17.01746 -16.66881 -16.41668 -16.13487 -15.75180 -15.34346 -15.17047 -14.99587 -14.75140 -14.63654 -14.44825 -14.31004 -14.22526 -14.07576 -13.84260 -13.47312 -13.34563 -13.20493 -13.04649 -12.91164 -12.67230 -12.46178 -12.41479 -12.24037 -11.98519 -11.69957 -11.49381 -10.96425 -10.92850 -10.82603 -10.39749 -10.23592 -9.72017 -9.33171 -9.20306 -8.41124 -6.01285 1.09568 1.29965 1.34552 1.43114 1.62312 1.82178 1.96094 2.22307 2.26978 2.37387 2.66018 3.14083 3.22574 3.36179 3.57252 3.65095 3.82287 4.00491 4.02479 4.15766 4.24629 4.28675 4.34865 4.37300 4.41763 4.44792 4.47476 4.61199 4.63909 4.72900 4.80751 4.85498 4.97211 5.00943 5.09278 5.15416 5.17610 5.51958 5.54563 5.84322 5.86739 5.95552 6.03308 6.38533 6.58853 6.60177 6.88819 7.19730 7.23584 7.40292 7.97134 8.76416 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024864 B = 0.001999 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.841537 B =14000.359227 C =14765.119645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.601 5.601 3 C 0.513 3.487 4 O -0.571 6.571 5 C -0.044 4.044 6 C 0.199 3.801 7 N -0.517 5.517 8 C -0.071 4.071 9 C -0.035 4.035 10 N -0.553 5.553 11 H 0.436 0.564 12 C 0.128 3.872 13 H 0.084 0.916 14 C -0.123 4.123 15 C 0.050 3.950 16 N -0.519 5.519 17 C 0.047 3.953 18 C 0.454 3.546 19 O -0.603 6.603 20 N -0.594 5.594 21 C -0.325 4.325 22 H 0.057 0.943 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.962 3.038 26 H -0.256 1.256 27 H -0.275 1.275 28 H -0.236 1.236 29 C 0.039 3.961 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.173 0.827 36 H 0.215 0.785 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.036 0.964 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.119 0.881 43 H 0.388 0.612 44 H 0.279 0.721 45 H 0.096 0.904 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.299 35.806 -5.248 36.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.334 5.334 3 C 0.302 3.698 4 O -0.449 6.449 5 C -0.085 4.085 6 C -0.066 4.066 7 N -0.237 5.237 8 C -0.218 4.218 9 C -0.170 4.170 10 N -0.158 5.158 11 H 0.278 0.722 12 C 0.022 3.978 13 H 0.102 0.898 14 C -0.161 4.161 15 C -0.077 4.077 16 N -0.244 5.244 17 C -0.085 4.085 18 C 0.241 3.759 19 O -0.486 6.486 20 N -0.236 5.236 21 C -0.454 4.454 22 H 0.076 0.924 23 C -0.213 4.213 24 N -0.574 5.574 25 Si 0.782 3.218 26 H -0.181 1.181 27 H -0.200 1.200 28 H -0.159 1.159 29 C -0.090 4.090 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.170 0.830 34 H 0.159 0.841 35 H 0.190 0.810 36 H 0.232 0.768 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.137 0.863 43 H 0.223 0.777 44 H 0.088 0.912 45 H 0.114 0.886 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.544 34.706 -4.945 35.350 hybrid contribution 1.431 -0.045 -0.414 1.490 sum -3.114 34.661 -5.359 35.211 Atomic orbital electron populations 1.22207 0.76728 1.05316 1.03766 1.47767 1.08422 1.04117 1.73062 1.20842 0.87653 0.85942 0.75400 1.90760 1.16187 1.87570 1.50420 1.20104 0.94817 0.84769 1.08818 1.22759 0.99720 0.93889 0.90260 1.70159 1.07277 1.17958 1.28265 1.22746 1.04094 0.95001 0.99987 1.23271 0.92965 1.00237 1.00558 1.43183 1.27630 1.20094 1.24943 0.72241 1.22136 0.97145 0.83400 0.95101 0.89760 1.23061 1.03445 0.92105 0.97537 1.22911 0.99014 0.97872 0.87949 1.63213 1.50634 1.06872 1.03663 1.22098 0.95874 0.89391 1.01107 1.20781 0.83749 0.88141 0.83184 1.90525 1.34177 1.84110 1.39816 1.42053 1.33212 1.05305 1.43070 1.18999 1.17951 0.81580 1.26900 0.92449 1.26068 1.01121 0.94335 0.99788 1.69799 1.42432 1.00575 1.44642 0.85400 0.77758 0.79786 0.78815 1.18072 1.19985 1.15904 1.23195 1.02821 0.86026 0.96914 0.90985 0.87419 0.90194 0.83025 0.84085 0.80952 0.76843 0.89793 0.88397 0.94526 0.91593 0.90858 0.86349 0.77678 0.91183 0.88594 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 9.19 127.77 1.17 1.64 16 2 N -0.60 -9.64 2.88 -815.44 -2.35 -11.99 16 3 C 0.51 10.04 7.66 87.66 0.67 10.71 16 4 O -0.57 -17.74 14.92 -3.04 -0.05 -17.78 16 5 C -0.04 -0.45 4.88 29.10 0.14 -0.31 16 6 C 0.20 3.41 6.96 138.12 0.96 4.37 16 7 N -0.52 -13.09 10.58 -188.13 -1.99 -15.08 16 8 C -0.07 -1.39 11.87 83.53 0.99 -0.40 16 9 C -0.04 -0.41 12.04 83.09 1.00 0.59 16 10 N -0.55 -5.60 6.15 -186.28 -1.15 -6.75 16 11 H 0.44 0.69 8.96 -92.71 -0.83 -0.14 16 12 C 0.13 2.76 3.36 46.27 0.16 2.91 16 13 H 0.08 2.26 7.00 -2.38 -0.02 2.24 16 14 C -0.12 -2.62 6.62 32.08 0.21 -2.41 16 15 C 0.05 1.53 5.77 86.77 0.50 2.03 16 16 N -0.52 -15.97 4.85 -890.07 -4.32 -20.29 16 17 C 0.05 1.54 5.07 85.55 0.43 1.97 16 18 C 0.45 21.04 7.58 87.66 0.66 21.70 16 19 O -0.60 -33.55 14.67 -3.08 -0.05 -33.59 16 20 N -0.59 -28.80 5.09 -307.00 -1.56 -30.36 16 21 C -0.33 -19.32 10.16 84.04 0.85 -18.47 16 22 H 0.06 4.03 7.39 -2.91 -0.02 4.01 16 23 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 24 N -0.93 -56.91 13.96 21.67 0.30 -56.60 16 25 Si 0.96 39.87 27.73 68.60 1.90 41.77 16 26 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.24 -8.39 6.52 99.48 0.65 -7.74 16 29 C 0.04 0.90 6.50 86.65 0.56 1.46 16 30 H 0.07 0.46 7.90 -2.39 -0.02 0.44 16 31 H 0.11 0.02 6.44 -2.38 -0.02 0.01 16 32 H 0.08 0.71 5.99 -2.39 -0.01 0.69 16 33 H 0.15 0.08 7.40 -2.39 -0.02 0.06 16 34 H 0.14 0.86 8.11 -2.39 -0.02 0.84 16 35 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.21 0.65 8.06 -2.91 -0.02 0.62 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 38 H 0.10 1.78 6.02 -2.39 -0.01 1.77 16 39 H 0.04 1.15 7.61 -2.39 -0.02 1.13 16 40 H 0.07 2.41 7.41 -2.39 -0.02 2.40 16 41 H 0.07 2.13 7.83 -2.38 -0.02 2.11 16 42 H 0.12 3.25 8.01 -2.39 -0.02 3.23 16 43 H 0.39 15.79 5.76 -92.71 -0.53 15.26 16 44 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.10 1.97 7.01 -2.39 -0.02 1.95 16 46 H 0.06 1.43 7.54 -2.39 -0.02 1.41 16 Total: -1.00 -94.82 373.67 -0.84 -95.66 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -0.39 Total: 29.57 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: 8.79 Total: 25.44 kcal Atomic # 7 Polarization: -130.01 SS G_CDS: -11.06 Total: -141.07 kcal Atomic # 8 Polarization: -51.28 SS G_CDS: -0.09 Total: -51.38 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 1.90 Total: 41.77 kcal Total: -94.82 -0.84 -95.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665670464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.371 kcal (2) G-P(sol) polarization free energy of solvation -94.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds