Wall clock time and date at job start Tue Mar 31 2020 18:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 120.00090 * 2 1 4 4 O 1.21607 * 119.99734 * 183.35702 * 3 2 1 5 5 C 1.47402 * 119.99713 * 3.35449 * 3 2 1 6 6 N 1.31613 * 125.87018 * 353.50049 * 5 3 2 7 7 C 1.33099 * 109.10097 * 179.97438 * 6 5 3 8 8 C 1.35566 * 108.34535 * 359.74267 * 7 6 5 9 9 N 1.35400 * 107.16437 * 0.41590 * 8 7 6 10 10 H 0.96997 * 126.44281 * 179.84003 * 9 8 7 11 11 C 1.46497 * 119.99956 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.47091 * 179.97438 * 11 2 1 13 13 C 1.52990 * 109.47275 * 299.99727 * 11 2 1 14 14 N 1.46896 * 109.47428 * 305.00056 * 13 11 2 15 15 C 1.46903 * 111.00672 * 179.97438 * 14 13 11 16 16 C 1.50690 * 109.47452 * 180.02562 * 15 14 13 17 17 O 1.21289 * 120.00083 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99864 * 180.02562 * 16 15 14 19 19 C 1.37104 * 120.00005 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99707 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00020 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00006 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99994 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47569 * 59.99594 * 23 21 19 25 25 H 1.48502 * 109.47389 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47017 * 299.99629 * 23 21 19 27 27 C 1.53005 * 109.47130 * 60.00022 * 11 2 1 28 28 C 1.53004 * 117.49787 * 128.74649 * 27 11 2 29 29 C 1.52997 * 117.49903 * 60.08663 * 27 11 2 30 30 H 1.09003 * 109.47395 * 84.09297 * 1 2 3 31 31 H 1.08998 * 109.47188 * 204.09694 * 1 2 3 32 32 H 1.09004 * 109.46891 * 324.09807 * 1 2 3 33 33 H 1.07993 * 125.82772 * 180.02562 * 7 6 5 34 34 H 1.07999 * 126.41667 * 180.30392 * 8 7 6 35 35 H 1.09000 * 109.47175 * 65.00335 * 13 11 2 36 36 H 1.09006 * 109.47494 * 184.99798 * 13 11 2 37 37 H 1.00904 * 111.00287 * 56.04302 * 14 13 11 38 38 H 1.09007 * 109.47055 * 300.00534 * 15 14 13 39 39 H 1.09005 * 109.46832 * 59.99890 * 15 14 13 40 40 H 0.97001 * 120.00230 * 359.97438 * 18 16 15 41 41 H 0.97008 * 119.99886 * 179.97438 * 22 21 19 42 42 H 1.09001 * 115.55022 * 274.41563 * 27 11 2 43 43 H 1.08994 * 117.50123 * 0.02562 * 28 27 11 44 44 H 1.08998 * 117.49305 * 145.02084 * 28 27 11 45 45 H 1.09004 * 117.49946 * 214.97673 * 29 27 11 46 46 H 1.09004 * 117.50107 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3534 1.1681 -0.0617 5 6 1.4037 2.4427 0.0747 6 7 0.0961 2.5832 0.0243 7 6 -0.2072 3.8755 0.1216 8 6 0.9467 4.5766 0.2434 9 7 1.9630 3.6825 0.2087 10 1 2.9098 3.8838 0.2713 11 6 2.1974 -1.2687 -0.0006 12 1 3.2691 -1.0695 -0.0009 13 6 1.8279 -2.0715 1.2483 14 7 2.0714 -1.2552 2.4450 15 6 1.7264 -1.9951 3.6663 16 6 1.9881 -1.1275 4.8702 17 8 2.4201 -0.0034 4.7253 18 7 1.7432 -1.6009 6.1081 19 6 1.9819 -0.8117 7.2035 20 1 2.3665 0.1892 7.0744 21 6 1.7299 -1.2999 8.4797 22 7 1.2624 -2.5180 8.6368 23 14 2.0544 -0.2244 9.9721 24 1 1.2238 1.0037 9.8874 25 1 1.7074 -0.9731 11.2068 26 1 3.4907 0.1510 10.0088 27 6 1.8278 -2.0705 -1.2502 28 6 2.9740 -2.6050 -2.1113 29 6 2.1227 -1.4348 -2.6103 30 1 -0.3634 0.1058 -1.0222 31 1 -0.3633 -0.9381 0.4196 32 1 -0.3633 0.8325 0.6026 33 1 -1.2028 4.2937 0.1106 34 1 1.0383 5.6477 0.3467 35 1 0.7742 -2.3470 1.2045 36 1 2.4377 -2.9739 1.2938 37 1 1.5667 -0.3828 2.3965 38 1 0.6718 -2.2697 3.6391 39 1 2.3351 -2.8972 3.7287 40 1 1.3981 -2.5000 6.2240 41 1 1.0868 -2.8590 9.5278 42 1 0.9322 -2.6861 -1.1660 43 1 3.9914 -2.3858 -1.7874 44 1 2.8323 -3.5720 -2.5938 45 1 1.4213 -1.6325 -3.4209 46 1 2.5804 -0.4455 -2.6148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676215494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:49 Heat of formation + Delta-G solvation = 35.557475 kcal Electronic energy + Delta-G solvation = -29213.486307 eV Core-core repulsion = 25140.867212 eV Total energy + Delta-G solvation = -4072.619095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.38972 -40.03471 -38.22591 -37.65828 -35.74641 -34.62353 -33.76094 -32.75839 -31.21163 -30.56640 -29.16551 -26.96060 -26.29494 -24.31641 -23.57251 -22.51418 -22.00792 -21.69666 -20.82468 -19.72213 -19.15359 -18.19079 -17.86254 -16.99710 -16.39726 -16.16692 -15.78244 -15.36769 -15.28246 -14.86342 -14.49238 -14.24603 -14.20444 -14.06612 -13.91370 -13.61332 -13.41701 -13.27309 -12.86712 -12.52902 -12.37950 -11.95157 -11.77313 -11.70862 -11.56062 -11.47834 -11.17009 -10.96999 -10.64220 -10.44995 -10.43132 -10.41366 -10.21674 -10.18581 -9.94644 -9.47090 -8.86145 -8.66862 -8.37143 -7.99446 -7.91930 -6.38796 -3.79403 1.26680 2.35928 2.48974 3.20726 3.21904 3.27055 3.31762 3.33024 3.74234 3.94781 4.02665 4.12915 4.25677 4.70318 4.72496 4.74908 4.83170 5.01833 5.06378 5.11510 5.19750 5.22508 5.27096 5.29729 5.39424 5.48502 5.64679 5.66341 5.73160 5.77027 5.79236 5.87728 5.97018 6.01472 6.03348 6.12811 6.30149 6.35366 6.58699 6.96046 7.21553 7.25590 7.57670 7.59701 7.70192 8.05524 8.09436 8.65101 9.21045 9.57786 10.09970 10.79020 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010963 B = 0.003090 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.445220 B = 9059.528949 C =10909.856432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.580 5.580 3 C 0.608 3.392 4 O -0.536 6.536 5 C 0.154 3.846 6 N -0.440 5.440 7 C -0.033 4.033 8 C -0.025 4.025 9 N -0.523 5.523 10 H 0.431 0.569 11 C 0.174 3.826 12 H 0.112 0.888 13 C 0.053 3.947 14 N -0.665 5.665 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.101 0.899 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.164 4.164 28 C -0.169 4.169 29 C -0.168 4.168 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.178 0.822 34 H 0.185 0.815 35 H 0.032 0.968 36 H 0.086 0.914 37 H 0.349 0.651 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.805 4.604 -22.203 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.312 5.312 3 C 0.394 3.606 4 O -0.412 6.412 5 C -0.107 4.107 6 N -0.163 5.163 7 C -0.185 4.185 8 C -0.164 4.164 9 N -0.124 5.124 10 H 0.270 0.730 11 C 0.071 3.929 12 H 0.130 0.870 13 C -0.077 4.077 14 N -0.298 5.298 15 C -0.081 4.081 16 C 0.227 3.773 17 O -0.466 6.466 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.119 0.881 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.184 4.184 28 C -0.206 4.206 29 C -0.205 4.205 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.195 0.805 34 H 0.202 0.798 35 H 0.050 0.950 36 H 0.104 0.896 37 H 0.168 0.832 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.126 0.874 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.794 4.399 -22.182 22.786 hybrid contribution -0.290 0.747 1.048 1.319 sum -3.085 5.146 -21.135 21.970 Atomic orbital electron populations 1.22277 0.78062 1.03934 1.03074 1.47409 1.07841 1.04494 1.71420 1.16461 0.85709 0.81573 0.76883 1.90837 1.12703 1.86683 1.50969 1.22640 0.89229 0.87249 1.11611 1.70365 1.10079 1.19277 1.16551 1.22575 0.98847 0.89213 1.07909 1.22980 0.87938 0.96931 1.08538 1.42934 1.10918 1.06495 1.52078 0.72986 1.20783 0.98557 0.81422 0.92124 0.87034 1.22281 0.99214 0.96693 0.89559 1.60007 1.63440 1.06695 0.99648 1.21673 0.98952 0.97353 0.90167 1.19818 0.84843 0.88571 0.84103 1.90527 1.49824 1.20500 1.85728 1.41845 1.57516 1.16358 1.04378 1.19648 1.40722 0.98820 0.83653 0.88072 1.25243 0.97162 0.96459 0.99048 1.69607 1.44995 1.15707 1.24111 0.85927 0.79033 0.79416 0.79892 1.19949 1.20967 1.19909 1.22572 1.00830 1.03304 0.91686 1.23008 0.96183 0.98278 1.03141 1.22832 1.03322 0.97949 0.96439 0.92390 0.91930 0.87482 0.80517 0.79769 0.94993 0.89560 0.83156 0.93964 0.89514 0.77472 0.91858 0.87390 0.88400 0.88593 0.88881 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 8.91 59.84 0.53 1.30 16 2 N -0.58 -7.46 1.71 -175.21 -0.30 -7.76 16 3 C 0.61 9.12 7.67 -12.53 -0.10 9.03 16 4 O -0.54 -9.37 16.43 5.27 0.09 -9.28 16 5 C 0.15 2.08 7.67 -154.52 -1.18 0.89 16 6 N -0.44 -5.51 7.69 -11.26 -0.09 -5.60 16 7 C -0.03 -0.33 11.85 -17.96 -0.21 -0.54 16 8 C -0.02 -0.21 12.00 -16.93 -0.20 -0.41 16 9 N -0.52 -5.68 6.15 -10.78 -0.07 -5.74 16 10 H 0.43 3.98 8.96 -40.82 -0.37 3.61 16 11 C 0.17 2.14 2.52 -67.93 -0.17 1.97 16 12 H 0.11 1.65 6.66 -51.93 -0.35 1.30 16 13 C 0.05 0.68 4.98 -3.83 -0.02 0.66 16 14 N -0.66 -11.64 6.12 -115.06 -0.70 -12.34 16 15 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 16 C 0.44 10.86 7.82 -10.99 -0.09 10.77 16 17 O -0.58 -16.56 15.78 5.55 0.09 -16.47 16 18 N -0.56 -14.69 5.29 -10.97 -0.06 -14.75 16 19 C -0.30 -8.54 9.68 -14.93 -0.14 -8.68 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 23 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 C -0.16 -1.56 4.83 -90.62 -0.44 -2.00 16 28 C -0.17 -1.47 10.18 -26.69 -0.27 -1.74 16 29 C -0.17 -1.56 10.13 -26.69 -0.27 -1.83 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.63 6.54 -51.93 -0.34 0.29 16 32 H 0.11 1.34 5.34 -51.93 -0.28 1.07 16 33 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.19 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.03 0.37 6.87 -51.93 -0.36 0.01 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.35 6.61 7.56 -39.29 -0.30 6.31 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 41 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.11 0.91 8.11 -51.93 -0.42 0.49 16 43 H 0.10 0.91 8.05 -51.93 -0.42 0.49 16 44 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 387.56 15.07 5.84 5.84 Total: -1.00 -35.20 387.56 -8.65 -43.85 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -6.46 Total: 19.20 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -2.69 Total: 10.84 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -0.49 Total: -70.38 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: 0.17 Total: -25.76 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.20 -8.65 -43.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676215494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.406 kcal (2) G-P(sol) polarization free energy of solvation -35.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds