Wall clock time and date at job start Tue Mar 31 2020 18:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35673 * 117.00010 * 2 1 4 4 C 1.39489 * 120.00922 * 180.02562 * 3 2 1 5 5 N 1.31955 * 120.11227 * 179.97438 * 4 3 2 6 6 C 1.32195 * 120.13896 * 359.72834 * 5 4 3 7 7 C 1.39236 * 120.02565 * 0.52488 * 6 5 4 8 8 C 1.48130 * 120.06013 * 179.75431 * 7 6 5 9 9 O 1.21522 * 119.99784 * 359.72338 * 8 7 6 10 10 N 1.34778 * 120.00149 * 179.72004 * 8 7 6 11 11 C 1.46498 * 119.99885 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47212 * 180.02562 * 11 10 8 13 13 N 1.46897 * 109.47643 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00639 * 170.00553 * 13 12 11 15 15 C 1.53232 * 109.34077 * 172.74773 * 14 13 12 16 16 N 1.47078 * 108.52568 * 53.82710 * 15 14 13 17 17 C 1.36943 * 120.88200 * 128.79038 * 16 15 14 18 18 H 1.07999 * 119.99657 * 206.58893 * 17 16 15 19 19 C 1.38807 * 119.99782 * 26.59378 * 17 16 15 20 20 N 1.31618 * 120.00188 * 17.00985 * 19 17 16 21 21 Si 1.86799 * 119.99686 * 197.00832 * 19 17 16 22 22 H 1.48496 * 109.47164 * 60.00292 * 21 19 17 23 23 H 1.48510 * 109.47314 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47403 * 299.99703 * 21 19 17 25 25 C 1.47074 * 118.23475 * 308.81659 * 16 15 14 26 26 C 1.46902 * 110.99959 * 45.69494 * 13 12 11 27 27 N 1.32157 * 120.01273 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47381 * 59.99512 * 1 2 3 29 29 H 1.09000 * 109.47424 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47163 * 299.99400 * 1 2 3 31 31 H 1.08002 * 119.94812 * 359.95247 * 4 3 2 32 32 H 1.08006 * 119.98334 * 180.27526 * 6 5 4 33 33 H 0.97002 * 119.99773 * 0.02562 * 10 8 7 34 34 H 1.09000 * 109.47053 * 60.00542 * 11 10 8 35 35 H 1.09000 * 109.47634 * 300.00366 * 11 10 8 36 36 H 1.09004 * 109.47176 * 60.00076 * 12 11 10 37 37 H 1.09005 * 109.47474 * 300.00797 * 12 11 10 38 38 H 1.08998 * 109.49451 * 52.78086 * 14 13 12 39 39 H 1.09003 * 109.48501 * 292.70700 * 14 13 12 40 40 H 1.09004 * 109.62738 * 173.54003 * 15 14 13 41 41 H 1.09000 * 109.62796 * 293.91651 * 15 14 13 42 42 H 0.97006 * 119.99914 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.63035 * 170.89298 * 25 16 15 44 44 H 1.08997 * 109.62936 * 291.47090 * 25 16 15 45 45 H 1.09000 * 109.48602 * 67.29911 * 26 13 12 46 46 H 1.09000 * 109.49677 * 307.22315 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4379 1.2821 -0.0005 5 7 4.0390 2.4567 -0.0011 6 6 3.3237 3.5684 -0.0065 7 6 1.9330 3.5021 -0.0006 8 6 1.1307 4.7474 -0.0012 9 8 1.6864 5.8281 -0.0017 10 7 -0.2154 4.6818 -0.0012 11 6 -1.0088 5.9133 -0.0012 12 6 -2.4976 5.5610 -0.0006 13 7 -3.2932 6.7958 -0.0012 14 6 -4.7137 6.5069 -0.2387 15 6 -5.5306 7.7899 -0.0526 16 7 -4.9571 8.8376 -0.9109 17 6 -5.7489 9.5580 -1.7650 18 1 -5.3249 9.9899 -2.6595 19 6 -7.0963 9.7330 -1.4811 20 7 -7.5466 9.5119 -0.2643 21 14 -8.2704 10.2823 -2.8261 22 1 -8.2623 9.2863 -3.9274 23 1 -9.6430 10.3935 -2.2701 24 1 -7.8397 11.6033 -3.3501 25 6 -3.5107 9.0907 -0.8278 26 6 -2.7733 7.7565 -0.9835 27 7 1.3254 2.3174 0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 4.0254 0.3759 -0.0002 32 1 3.8184 4.5285 -0.0114 33 1 -0.6590 3.8191 -0.0005 34 1 -0.7736 6.4970 -0.8912 35 1 -0.7736 6.4971 0.8887 36 1 -2.7325 4.9775 0.8896 37 1 -2.7332 4.9769 -0.8903 38 1 -5.0549 5.7524 0.4701 39 1 -4.8445 6.1367 -1.2556 40 1 -6.5668 7.6089 -0.3383 41 1 -5.4879 8.1030 0.9906 42 1 -8.4882 9.6346 -0.0658 43 1 -3.2114 9.7698 -1.6262 44 1 -3.2710 9.5308 0.1401 45 1 -2.9311 7.3690 -1.9899 46 1 -1.7071 7.9083 -0.8148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690079429.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:16 Heat of formation + Delta-G solvation = 23.815084 kcal Electronic energy + Delta-G solvation = -28242.068598 eV Core-core repulsion = 24168.940315 eV Total energy + Delta-G solvation = -4073.128283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.95780 -39.91182 -38.84337 -38.26460 -35.62473 -34.84039 -33.92613 -31.78008 -31.36734 -30.23365 -28.85483 -28.12890 -26.45171 -25.35967 -24.25735 -23.57539 -22.54114 -21.52613 -21.18078 -19.21368 -18.96125 -18.83457 -17.34078 -17.00253 -16.90133 -16.87540 -16.16871 -15.83951 -15.14630 -14.96956 -14.85507 -14.66276 -14.33765 -14.16239 -13.77053 -13.58780 -13.53451 -13.36859 -12.99350 -12.66807 -12.53856 -12.21160 -12.13412 -11.74866 -11.53788 -11.42392 -11.36654 -11.06657 -10.88388 -10.72015 -10.51720 -10.32368 -10.08738 -9.82134 -9.76161 -9.64735 -9.41507 -9.22274 -8.51595 -7.91280 -6.68090 -5.79165 -3.20188 -0.15049 0.49841 2.29287 2.30833 2.59216 3.24214 3.31405 3.37721 3.43354 3.44461 3.70707 3.86378 4.32407 4.49246 4.52131 4.57984 4.74200 4.77895 4.79528 4.85313 5.05168 5.10846 5.37837 5.39366 5.44748 5.47702 5.76936 5.81883 5.86507 5.94272 6.09343 6.11764 6.19271 6.30358 6.36748 6.47011 6.50497 6.66115 6.91798 6.98410 7.18105 7.21583 7.49408 7.59642 7.66380 7.77578 7.79554 8.42455 9.20287 9.83616 10.42043 11.29781 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023990 B = 0.001976 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.869407 B =14166.648466 C =14882.409260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.297 6.297 3 C 0.276 3.724 4 C 0.068 3.932 5 N -0.404 5.404 6 C 0.067 3.933 7 C 0.077 3.923 8 C 0.573 3.427 9 O -0.520 6.520 10 N -0.705 5.705 11 C 0.112 3.888 12 C 0.044 3.956 13 N -0.527 5.527 14 C 0.037 3.963 15 C 0.178 3.822 16 N -0.596 5.596 17 C -0.252 4.252 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.904 5.904 21 Si 0.903 3.097 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.148 3.852 26 C 0.034 3.966 27 N -0.476 5.476 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.184 0.816 32 H 0.188 0.812 33 H 0.408 0.592 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.033 0.967 38 H 0.061 0.939 39 H 0.026 0.974 40 H 0.089 0.911 41 H 0.027 0.973 42 H 0.254 0.746 43 H 0.056 0.944 44 H 0.027 0.973 45 H 0.029 0.971 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.410 -20.482 1.619 27.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.202 6.202 3 C 0.091 3.909 4 C -0.097 4.097 5 N -0.118 5.118 6 C -0.091 4.091 7 C -0.063 4.063 8 C 0.355 3.645 9 O -0.395 6.395 10 N -0.356 5.356 11 C -0.010 4.010 12 C -0.085 4.085 13 N -0.253 5.253 14 C -0.092 4.092 15 C 0.052 3.948 16 N -0.319 5.319 17 C -0.382 4.382 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.548 5.548 21 Si 0.733 3.267 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.022 3.978 26 C -0.096 4.096 27 N -0.209 5.209 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.201 0.799 32 H 0.205 0.795 33 H 0.243 0.757 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.045 0.955 40 H 0.107 0.893 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.047 0.953 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 18.702 -19.644 2.138 27.207 hybrid contribution -1.350 -0.585 -1.426 2.049 sum 17.352 -20.229 0.712 26.661 Atomic orbital electron populations 1.23035 0.76300 1.03921 1.02916 1.86298 1.23629 1.22966 1.87276 1.20964 0.91112 0.85340 0.93530 1.23286 0.89674 0.97955 0.98790 1.68671 1.37948 0.97646 1.07495 1.23696 0.90598 0.98751 0.96024 1.21965 0.93545 0.91371 0.99406 1.17571 0.82368 0.86878 0.77657 1.90852 1.71251 1.27901 1.49465 1.45811 1.05587 1.11044 1.73128 1.21710 0.90059 0.85541 1.03738 1.22248 0.91537 0.93761 1.00910 1.62037 1.03219 1.09562 1.50457 1.22925 0.87060 1.01036 0.98208 1.20859 0.96328 0.83869 0.93784 1.44119 1.01941 1.38998 1.46829 1.19156 0.90815 1.28346 0.99847 0.91667 1.25025 0.98529 1.00287 0.95932 1.70018 1.14271 1.53143 1.17408 0.86358 0.80247 0.78624 0.81467 1.21151 1.21616 1.20867 1.20984 0.85533 0.92492 0.98833 1.22812 0.98575 0.95431 0.92733 1.67931 1.40168 0.98151 1.14658 0.91817 0.87825 0.91770 0.79921 0.79497 0.75653 0.90365 0.89872 0.90547 0.94865 0.92032 0.95543 0.89268 0.95458 0.93559 0.92534 0.95514 0.95304 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.39 101.05 1.05 1.22 16 2 O -0.30 -2.08 10.49 -18.72 -0.20 -2.28 16 3 C 0.28 2.22 7.50 -16.95 -0.13 2.09 16 4 C 0.07 0.49 11.18 -17.03 -0.19 0.30 16 5 N -0.40 -3.57 10.48 -12.58 -0.13 -3.70 16 6 C 0.07 0.62 10.76 -17.02 -0.18 0.44 16 7 C 0.08 0.77 6.75 -82.87 -0.56 0.21 16 8 C 0.57 6.69 7.81 -12.20 -0.10 6.59 16 9 O -0.52 -7.51 16.34 5.35 0.09 -7.42 16 10 N -0.70 -7.42 5.55 -61.16 -0.34 -7.76 16 11 C 0.11 1.37 4.93 -4.05 -0.02 1.35 16 12 C 0.04 0.57 5.38 -3.83 -0.02 0.55 16 13 N -0.53 -8.97 4.78 -234.33 -1.12 -10.08 16 14 C 0.04 0.69 5.58 -3.71 -0.02 0.67 16 15 C 0.18 4.23 5.42 -3.61 -0.02 4.21 16 16 N -0.60 -15.04 3.04 -172.02 -0.52 -15.57 16 17 C -0.25 -6.93 9.63 -15.06 -0.15 -7.07 16 18 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 19 C 0.00 0.02 4.94 -17.43 -0.09 -0.07 16 20 N -0.90 -26.14 11.15 55.49 0.62 -25.52 16 21 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 C 0.15 3.15 6.69 -3.61 -0.02 3.13 16 26 C 0.03 0.59 5.04 -3.70 -0.02 0.57 16 27 N -0.48 -4.30 8.60 -9.69 -0.08 -4.38 16 28 H 0.06 0.33 8.11 -51.93 -0.42 -0.09 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.32 8.11 -51.93 -0.42 -0.10 16 31 H 0.18 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.19 1.55 7.64 -52.48 -0.40 1.15 16 33 H 0.41 3.58 7.82 -40.82 -0.32 3.26 16 34 H 0.08 1.03 6.18 -51.93 -0.32 0.71 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 38 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 2.35 6.12 -51.93 -0.32 2.03 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.06 1.16 7.95 -51.93 -0.41 0.75 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.07 1.07 5.73 -51.93 -0.30 0.77 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -32.13 378.42 -8.16 -40.29 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.68 Total: -0.06 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: -0.46 Total: 14.19 kcal Atomic # 7 Polarization: -65.43 SS G_CDS: -1.58 Total: -67.01 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.11 Total: -9.70 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.13 -8.16 -40.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690079429.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.101 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds