Wall clock time and date at job start Tue Mar 31 2020 18:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35673 * 117.00010 * 2 1 4 4 C 1.39489 * 120.00922 * 180.02562 * 3 2 1 5 5 N 1.31955 * 120.11227 * 179.97438 * 4 3 2 6 6 C 1.32195 * 120.13896 * 359.72834 * 5 4 3 7 7 C 1.39236 * 120.02565 * 0.52488 * 6 5 4 8 8 C 1.48130 * 120.06013 * 179.75431 * 7 6 5 9 9 O 1.21522 * 119.99784 * 359.72338 * 8 7 6 10 10 N 1.34778 * 120.00149 * 179.72004 * 8 7 6 11 11 C 1.46498 * 119.99885 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47212 * 180.02562 * 11 10 8 13 13 N 1.46897 * 109.47643 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00639 * 170.00553 * 13 12 11 15 15 C 1.53232 * 109.34077 * 172.74773 * 14 13 12 16 16 N 1.47078 * 108.52568 * 53.82710 * 15 14 13 17 17 C 1.36943 * 120.88200 * 128.79038 * 16 15 14 18 18 H 1.07999 * 119.99657 * 206.58893 * 17 16 15 19 19 C 1.38807 * 119.99782 * 26.59378 * 17 16 15 20 20 N 1.31618 * 120.00188 * 17.00985 * 19 17 16 21 21 Si 1.86799 * 119.99686 * 197.00832 * 19 17 16 22 22 H 1.48496 * 109.47164 * 60.00292 * 21 19 17 23 23 H 1.48510 * 109.47314 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47403 * 299.99703 * 21 19 17 25 25 C 1.47074 * 118.23475 * 308.81659 * 16 15 14 26 26 C 1.46902 * 110.99959 * 45.69494 * 13 12 11 27 27 N 1.32157 * 120.01273 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47381 * 59.99512 * 1 2 3 29 29 H 1.09000 * 109.47424 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47163 * 299.99400 * 1 2 3 31 31 H 1.08002 * 119.94812 * 359.95247 * 4 3 2 32 32 H 1.08006 * 119.98334 * 180.27526 * 6 5 4 33 33 H 0.97002 * 119.99773 * 0.02562 * 10 8 7 34 34 H 1.09000 * 109.47053 * 60.00542 * 11 10 8 35 35 H 1.09000 * 109.47634 * 300.00366 * 11 10 8 36 36 H 1.09004 * 109.47176 * 60.00076 * 12 11 10 37 37 H 1.09005 * 109.47474 * 300.00797 * 12 11 10 38 38 H 1.08998 * 109.49451 * 52.78086 * 14 13 12 39 39 H 1.09003 * 109.48501 * 292.70700 * 14 13 12 40 40 H 1.09004 * 109.62738 * 173.54003 * 15 14 13 41 41 H 1.09000 * 109.62796 * 293.91651 * 15 14 13 42 42 H 0.97006 * 119.99914 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.63035 * 170.89298 * 25 16 15 44 44 H 1.08997 * 109.62936 * 291.47090 * 25 16 15 45 45 H 1.09000 * 109.48602 * 67.29911 * 26 13 12 46 46 H 1.09000 * 109.49677 * 307.22315 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4379 1.2821 -0.0005 5 7 4.0390 2.4567 -0.0011 6 6 3.3237 3.5684 -0.0065 7 6 1.9330 3.5021 -0.0006 8 6 1.1307 4.7474 -0.0012 9 8 1.6864 5.8281 -0.0017 10 7 -0.2154 4.6818 -0.0012 11 6 -1.0088 5.9133 -0.0012 12 6 -2.4976 5.5610 -0.0006 13 7 -3.2932 6.7958 -0.0012 14 6 -4.7137 6.5069 -0.2387 15 6 -5.5306 7.7899 -0.0526 16 7 -4.9571 8.8376 -0.9109 17 6 -5.7489 9.5580 -1.7650 18 1 -5.3249 9.9899 -2.6595 19 6 -7.0963 9.7330 -1.4811 20 7 -7.5466 9.5119 -0.2643 21 14 -8.2704 10.2823 -2.8261 22 1 -8.2623 9.2863 -3.9274 23 1 -9.6430 10.3935 -2.2701 24 1 -7.8397 11.6033 -3.3501 25 6 -3.5107 9.0907 -0.8278 26 6 -2.7733 7.7565 -0.9835 27 7 1.3254 2.3174 0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 4.0254 0.3759 -0.0002 32 1 3.8184 4.5285 -0.0114 33 1 -0.6590 3.8191 -0.0005 34 1 -0.7736 6.4970 -0.8912 35 1 -0.7736 6.4971 0.8887 36 1 -2.7325 4.9775 0.8896 37 1 -2.7332 4.9769 -0.8903 38 1 -5.0549 5.7524 0.4701 39 1 -4.8445 6.1367 -1.2556 40 1 -6.5668 7.6089 -0.3383 41 1 -5.4879 8.1030 0.9906 42 1 -8.4882 9.6346 -0.0658 43 1 -3.2114 9.7698 -1.6262 44 1 -3.2710 9.5308 0.1401 45 1 -2.9311 7.3690 -1.9899 46 1 -1.7071 7.9083 -0.8148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690079429.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:15 Heat of formation + Delta-G solvation = -2.752222 kcal Electronic energy + Delta-G solvation = -28243.220643 eV Core-core repulsion = 24168.940315 eV Total energy + Delta-G solvation = -4074.280328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.60855 -40.79867 -39.81136 -39.32958 -36.96705 -35.75357 -35.15067 -33.27607 -32.39265 -31.79912 -30.21439 -28.66209 -27.85982 -26.33810 -25.23381 -24.81575 -24.17368 -22.72247 -22.17683 -20.83484 -19.76869 -19.46462 -18.73920 -17.92946 -17.72657 -17.46739 -17.32075 -16.85418 -16.75736 -16.04740 -15.88844 -15.65582 -15.53176 -15.36159 -15.25778 -14.92460 -14.85569 -14.62099 -14.11945 -14.05272 -13.20795 -13.16663 -13.02737 -12.99394 -12.75020 -12.64706 -12.59667 -12.46198 -12.34642 -12.10136 -12.04691 -11.91562 -11.79566 -11.51847 -11.43059 -10.58729 -10.50182 -10.29947 -9.90988 -9.30664 -8.68850 -7.88106 -5.32669 -0.82284 -0.14091 1.46750 1.48557 1.49753 1.55739 1.70816 1.78493 2.50492 2.54425 2.62542 3.00246 3.15032 3.26311 3.27335 3.66307 3.71345 3.80898 3.96995 4.02752 4.28049 4.30468 4.33145 4.40726 4.41128 4.41579 4.55883 4.60674 4.69240 4.75613 4.82749 4.86636 4.90598 4.92039 5.02351 5.16024 5.21437 5.36606 5.60551 5.69007 5.75811 5.88126 6.10783 6.18643 6.25360 6.36975 6.47640 6.91740 7.13083 7.83474 8.37529 9.18616 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023990 B = 0.001976 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.869407 B =14166.648466 C =14882.409260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.298 6.298 3 C 0.271 3.729 4 C 0.082 3.918 5 N -0.417 5.417 6 C 0.064 3.936 7 C 0.063 3.937 8 C 0.574 3.426 9 O -0.553 6.553 10 N -0.694 5.694 11 C 0.122 3.878 12 C 0.053 3.947 13 N -0.539 5.539 14 C 0.053 3.947 15 C 0.183 3.817 16 N -0.615 5.615 17 C -0.265 4.265 18 H 0.066 0.934 19 C -0.052 4.052 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.278 1.278 23 H -0.293 1.293 24 H -0.276 1.276 25 C 0.142 3.858 26 C 0.048 3.952 27 N -0.478 5.478 28 H 0.061 0.939 29 H 0.127 0.873 30 H 0.063 0.937 31 H 0.216 0.784 32 H 0.190 0.810 33 H 0.418 0.582 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.087 0.913 39 H 0.023 0.977 40 H 0.059 0.941 41 H -0.001 1.001 42 H 0.251 0.749 43 H 0.059 0.941 44 H 0.016 0.984 45 H 0.026 0.974 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.519 -22.855 0.976 30.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.202 6.202 3 C 0.085 3.915 4 C -0.084 4.084 5 N -0.131 5.131 6 C -0.092 4.092 7 C -0.076 4.076 8 C 0.358 3.642 9 O -0.431 6.431 10 N -0.346 5.346 11 C -0.002 4.002 12 C -0.075 4.075 13 N -0.264 5.264 14 C -0.076 4.076 15 C 0.057 3.943 16 N -0.339 5.339 17 C -0.395 4.395 18 H 0.084 0.916 19 C -0.247 4.247 20 N -0.581 5.581 21 Si 0.797 3.203 22 H -0.204 1.204 23 H -0.219 1.219 24 H -0.202 1.202 25 C 0.017 3.983 26 C -0.082 4.082 27 N -0.212 5.212 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.081 0.919 31 H 0.233 0.767 32 H 0.207 0.793 33 H 0.256 0.744 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.017 0.983 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.034 0.966 45 H 0.044 0.956 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 19.828 -22.037 1.490 29.682 hybrid contribution -1.627 0.059 -1.182 2.012 sum 18.202 -21.978 0.308 28.538 Atomic orbital electron populations 1.23243 0.75191 1.05515 1.02748 1.86313 1.24724 1.22188 1.87004 1.21176 0.91593 0.85383 0.93331 1.23851 0.89773 0.98463 0.96319 1.68737 1.38084 0.98008 1.08235 1.23757 0.90470 0.99236 0.95768 1.21646 0.93468 0.91036 1.01446 1.17786 0.82519 0.87071 0.76800 1.90831 1.71870 1.29268 1.51115 1.45653 1.05270 1.11016 1.72629 1.21473 0.89776 0.86021 1.02887 1.22230 0.91011 0.91905 1.02396 1.61924 1.02655 1.11613 1.50222 1.22587 0.87719 0.98502 0.98766 1.20645 0.95888 0.85956 0.91790 1.44414 1.03360 1.39416 1.46708 1.19490 0.91543 1.28206 1.00278 0.91587 1.25799 1.00006 1.00990 0.97911 1.70181 1.14175 1.54554 1.19192 0.85315 0.77755 0.78388 0.78814 1.20421 1.21902 1.20211 1.21135 0.83938 0.94960 0.98304 1.22607 0.99278 0.93496 0.92776 1.67852 1.40446 0.98124 1.14776 0.92014 0.85451 0.91865 0.76727 0.79321 0.74423 0.91191 0.90844 0.88656 0.93615 0.89479 0.95838 0.92313 0.98288 0.94009 0.92282 0.96604 0.95592 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.39 113.37 1.18 1.39 16 2 O -0.30 -3.42 10.49 -89.90 -0.94 -4.36 16 3 C 0.27 3.77 7.50 84.95 0.64 4.41 16 4 C 0.08 0.98 11.18 84.98 0.95 1.93 16 5 N -0.42 -6.68 10.48 -193.72 -2.03 -8.71 16 6 C 0.06 1.14 10.76 84.88 0.91 2.05 16 7 C 0.06 1.18 6.75 41.81 0.28 1.46 16 8 C 0.57 12.91 7.81 86.87 0.68 13.59 16 9 O -0.55 -15.85 16.34 -3.78 -0.06 -15.92 16 10 N -0.69 -13.44 5.55 -465.71 -2.58 -16.02 16 11 C 0.12 2.74 4.93 86.38 0.43 3.16 16 12 C 0.05 1.21 5.38 86.30 0.46 1.67 16 13 N -0.54 -17.45 4.78 -895.28 -4.28 -21.73 16 14 C 0.05 1.96 5.58 86.38 0.48 2.44 16 15 C 0.18 8.93 5.42 86.35 0.47 9.39 16 16 N -0.61 -31.60 3.04 -698.16 -2.12 -33.72 16 17 C -0.27 -14.79 9.63 84.03 0.81 -13.98 16 18 H 0.07 3.58 7.88 -2.91 -0.02 3.56 16 19 C -0.05 -2.91 4.94 84.86 0.42 -2.49 16 20 N -0.93 -55.58 11.15 21.65 0.24 -55.34 16 21 Si 0.97 44.97 29.59 68.60 2.03 47.00 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 C 0.14 6.08 6.69 86.35 0.58 6.66 16 26 C 0.05 1.61 5.04 86.38 0.44 2.05 16 27 N -0.48 -7.82 8.60 -297.49 -2.56 -10.38 16 28 H 0.06 0.50 8.11 -2.39 -0.02 0.48 16 29 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.06 0.50 8.11 -2.39 -0.02 0.48 16 31 H 0.22 1.01 8.06 -2.91 -0.02 0.99 16 32 H 0.19 3.12 7.64 -2.91 -0.02 3.09 16 33 H 0.42 6.39 7.82 -92.71 -0.73 5.66 16 34 H 0.07 1.71 6.18 -2.39 -0.01 1.70 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.10 1.89 8.14 -2.38 -0.02 1.88 16 37 H 0.05 0.99 8.08 -2.38 -0.02 0.97 16 38 H 0.09 2.74 8.11 -2.39 -0.02 2.72 16 39 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 3.20 6.12 -2.38 -0.01 3.18 16 41 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 43 H 0.06 2.43 7.95 -2.38 -0.02 2.41 16 44 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.10 2.76 5.73 -2.39 -0.01 2.75 16 Total: -1.00 -70.53 378.42 -3.30 -73.83 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.28 Total: 11.60 kcal Atomic # 6 Polarization: 25.02 SS G_CDS: 8.72 Total: 33.74 kcal Atomic # 7 Polarization: -132.56 SS G_CDS: -13.33 Total: -145.89 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -1.00 Total: -20.28 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -70.53 -3.30 -73.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690079429.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.078 kcal (2) G-P(sol) polarization free energy of solvation -70.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds