Wall clock time and date at job start Tue Mar 31 2020 18:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34784 * 119.99864 * 2 1 4 4 O 1.21279 * 119.99925 * 179.72608 * 3 2 1 5 5 C 1.50700 * 119.99961 * 359.72839 * 3 2 1 6 6 C 1.50697 * 109.47266 * 180.02562 * 5 3 2 7 7 C 1.34664 * 126.59166 * 85.02190 * 6 5 3 8 8 N 1.34130 * 108.02017 * 179.97438 * 7 6 5 9 9 C 1.30496 * 109.25422 * 0.02562 * 8 7 6 10 10 N 1.35038 * 108.70333 * 359.76798 * 9 8 7 11 11 H 0.96999 * 126.40264 * 180.27046 * 10 9 8 12 12 C 1.46494 * 120.00444 * 179.72710 * 2 1 3 13 13 H 1.08999 * 110.28088 * 182.36032 * 12 2 1 14 14 C 1.54595 * 110.30980 * 304.55973 * 12 2 1 15 15 C 1.54940 * 102.92421 * 96.95415 * 14 12 2 16 16 N 1.48535 * 103.22592 * 37.41765 * 15 14 12 17 17 C 1.46899 * 111.00006 * 200.27970 * 16 15 14 18 18 C 1.50699 * 109.46835 * 307.39536 * 17 16 15 19 19 O 1.21287 * 120.00365 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99587 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99892 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99538 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00069 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99900 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99877 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47184 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47048 * 120.00456 * 25 23 21 28 28 H 1.48505 * 109.47259 * 240.00150 * 25 23 21 29 29 C 1.47907 * 105.81827 * 320.79380 * 16 15 14 30 30 H 1.09000 * 109.47297 * 90.00011 * 1 2 3 31 31 H 1.09002 * 109.47192 * 209.99937 * 1 2 3 32 32 H 1.08996 * 109.47342 * 329.99648 * 1 2 3 33 33 H 1.09004 * 109.46932 * 300.00223 * 5 3 2 34 34 H 1.08997 * 109.47392 * 59.99562 * 5 3 2 35 35 H 1.07995 * 125.99304 * 359.96539 * 7 6 5 36 36 H 1.07998 * 125.65003 * 179.97438 * 9 8 7 37 37 H 1.08997 * 110.72456 * 215.31553 * 14 12 2 38 38 H 1.09004 * 110.72161 * 338.59748 * 14 12 2 39 39 H 1.08999 * 110.66570 * 278.98094 * 15 14 12 40 40 H 1.09002 * 110.81017 * 155.91656 * 15 14 12 41 41 H 1.09000 * 109.46844 * 67.39748 * 17 16 15 42 42 H 1.08996 * 109.47051 * 187.39358 * 17 16 15 43 43 H 0.96998 * 120.00587 * 0.02562 * 20 18 17 44 44 H 0.97001 * 119.99847 * 179.97438 * 24 23 21 45 45 H 1.09001 * 109.91491 * 265.97829 * 29 16 15 46 46 H 1.08996 * 109.91586 * 144.68480 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 0.0050 5 6 1.3853 2.4724 -0.0062 6 6 2.3645 3.6178 -0.0055 7 6 2.9614 4.1643 -1.0819 8 7 3.7574 5.1563 -0.6559 9 6 3.6768 5.2449 0.6435 10 7 2.8145 4.3060 1.0889 11 1 2.5619 4.1479 2.0120 12 6 2.1975 -1.2686 0.0060 13 1 3.2711 -1.0847 0.0473 14 6 1.7536 -2.1389 1.2042 15 6 0.7020 -3.0861 0.5737 16 7 1.2643 -3.3711 -0.7712 17 6 0.2201 -3.8467 -1.6884 18 6 -0.5128 -5.0032 -1.0588 19 8 -0.1962 -5.3932 0.0451 20 7 -1.5203 -5.6041 -1.7225 21 6 -2.1867 -6.6566 -1.1500 22 1 -1.9047 -7.0038 -0.1671 23 6 -3.2250 -7.2764 -1.8345 24 7 -3.5678 -6.8542 -3.0308 25 14 -4.1335 -8.7099 -1.0541 26 1 -3.5598 -8.9885 0.2869 27 1 -5.5719 -8.3678 -0.9154 28 1 -3.9915 -9.9128 -1.9134 29 6 1.8446 -2.0956 -1.2442 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 0.7623 2.5279 -0.8989 34 1 0.7549 2.5322 0.8810 35 1 2.8236 3.8575 -2.1081 36 1 4.2088 5.9541 1.2603 37 1 2.5951 -2.7065 1.6013 38 1 1.3012 -1.5230 1.9815 39 1 -0.2635 -2.5872 0.4892 40 1 0.6098 -4.0038 1.1546 41 1 -0.4822 -3.0379 -1.8901 42 1 0.6777 -4.1718 -2.6227 43 1 -1.7733 -5.2925 -2.6056 44 1 -4.2924 -7.2871 -3.5088 45 1 1.1156 -1.5585 -1.8510 46 1 2.7450 -2.2906 -1.8267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698569670.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:16 Heat of formation + Delta-G solvation = 13.447769 kcal Electronic energy + Delta-G solvation = -28645.622382 eV Core-core repulsion = 24572.044538 eV Total energy + Delta-G solvation = -4073.577844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.34191 -40.50598 -38.95744 -37.58403 -35.16333 -33.95687 -33.17618 -32.30768 -31.47441 -30.96082 -28.91845 -27.50538 -27.21026 -26.04414 -24.21785 -22.12925 -21.65586 -21.21336 -20.83287 -19.45388 -19.14375 -18.13674 -17.94022 -17.61042 -16.60660 -16.02182 -15.89395 -15.30703 -15.10273 -14.74965 -14.71798 -14.50898 -14.28298 -13.87506 -13.86947 -13.68802 -13.43945 -13.17527 -13.03596 -12.69944 -12.59749 -12.48450 -12.13022 -11.93737 -11.68647 -11.59253 -11.28711 -11.17099 -10.95080 -10.71362 -10.37670 -10.31022 -10.28284 -10.27572 -10.00948 -9.55855 -8.93792 -8.66210 -8.44172 -8.06646 -7.93425 -6.47859 -3.88857 1.67551 2.32264 2.62898 2.85786 2.98255 3.11666 3.23011 3.29736 3.82476 4.03891 4.18151 4.25186 4.32684 4.51277 4.51889 4.61935 4.72045 4.79440 4.96818 5.00838 5.11903 5.14180 5.17741 5.21523 5.33470 5.36666 5.42401 5.46343 5.66187 5.76325 5.82594 5.88140 5.93470 5.98200 6.13943 6.21236 6.32724 6.44743 6.60943 7.03337 7.11029 7.15721 7.22562 7.49769 7.78281 7.89579 7.99905 8.54830 9.11794 9.47174 9.98445 10.69741 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031099 B = 0.001961 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.145001 B =14272.606843 C =14505.716172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.606 5.606 3 C 0.513 3.487 4 O -0.529 6.529 5 C -0.064 4.064 6 C -0.008 4.008 7 C -0.006 4.006 8 N -0.494 5.494 9 C 0.186 3.814 10 N -0.563 5.563 11 H 0.418 0.582 12 C 0.129 3.871 13 H 0.109 0.891 14 C -0.135 4.135 15 C 0.035 3.965 16 N -0.493 5.493 17 C 0.037 3.963 18 C 0.441 3.559 19 O -0.581 6.581 20 N -0.561 5.561 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.900 5.900 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.025 3.975 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.167 0.833 36 H 0.208 0.792 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.038 0.962 40 H 0.120 0.880 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.049 0.951 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.508 21.359 6.319 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.340 5.340 3 C 0.300 3.700 4 O -0.404 6.404 5 C -0.105 4.105 6 C -0.124 4.124 7 C -0.154 4.154 8 N -0.213 5.213 9 C -0.097 4.097 10 N -0.167 5.167 11 H 0.255 0.745 12 C 0.026 3.974 13 H 0.127 0.873 14 C -0.174 4.174 15 C -0.092 4.092 16 N -0.217 5.217 17 C -0.094 4.094 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.197 5.197 21 C -0.429 4.429 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.541 5.541 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.104 4.104 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.136 0.864 34 H 0.118 0.882 35 H 0.184 0.816 36 H 0.224 0.776 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.138 0.862 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.099 21.107 6.381 23.491 hybrid contribution -2.100 -0.520 0.484 2.217 sum 5.999 20.587 6.865 22.515 Atomic orbital electron populations 1.22030 0.79463 1.03975 1.02494 1.47968 1.07002 1.05720 1.73344 1.20510 0.88118 0.84974 0.76403 1.90740 1.13735 1.87074 1.48897 1.20079 0.96092 0.88552 1.05760 1.20455 1.04817 0.99329 0.87777 1.22031 0.98336 0.96368 0.98700 1.70283 1.21770 1.19982 1.09280 1.24938 0.96512 0.96027 0.92265 1.43192 1.35829 1.28028 1.09608 0.74486 1.21995 0.97999 0.82079 0.95375 0.87326 1.22950 1.00453 0.97382 0.96600 1.23622 0.94141 1.00507 0.90901 1.64646 1.29721 1.24984 1.02371 1.22098 0.93214 0.97192 0.96924 1.19692 0.83471 0.86662 0.87489 1.90436 1.68205 1.67024 1.20896 1.41864 1.29469 1.29987 1.18391 1.19750 1.12270 1.07931 1.02934 0.87804 1.25277 0.97598 0.99330 0.95732 1.69620 1.30137 1.42139 1.12249 0.85798 0.78871 0.80403 0.79264 1.19204 1.20773 1.20695 1.23306 1.00654 0.90015 0.96438 0.92148 0.89770 0.90960 0.86395 0.88168 0.81550 0.77594 0.89676 0.91016 0.94436 0.86183 0.93492 0.89171 0.77452 0.91862 0.93246 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 9.22 59.84 0.55 1.03 16 2 N -0.61 -5.96 2.72 -172.39 -0.47 -6.43 16 3 C 0.51 5.36 7.67 -10.98 -0.08 5.28 16 4 O -0.53 -7.75 15.39 5.56 0.09 -7.67 16 5 C -0.06 -0.43 4.82 -29.04 -0.14 -0.57 16 6 C -0.01 -0.07 5.73 -81.60 -0.47 -0.54 16 7 C -0.01 -0.07 11.79 -17.81 -0.21 -0.28 16 8 N -0.49 -5.83 11.25 -14.67 -0.17 -5.99 16 9 C 0.19 1.54 13.04 -90.38 -1.18 0.36 16 10 N -0.56 -4.05 6.15 -10.30 -0.06 -4.11 16 11 H 0.42 1.66 8.96 -40.82 -0.37 1.30 16 12 C 0.13 1.53 3.44 -66.58 -0.23 1.30 16 13 H 0.11 1.43 6.97 -51.93 -0.36 1.07 16 14 C -0.14 -1.65 6.13 -24.87 -0.15 -1.80 16 15 C 0.04 0.54 4.93 -1.90 -0.01 0.53 16 16 N -0.49 -7.87 5.26 -231.89 -1.22 -9.09 16 17 C 0.04 0.64 5.52 -4.98 -0.03 0.61 16 18 C 0.44 9.93 7.49 -10.99 -0.08 9.84 16 19 O -0.58 -14.74 13.09 5.55 0.07 -14.67 16 20 N -0.56 -13.69 5.29 -10.96 -0.06 -13.75 16 21 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 22 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -23.90 13.05 55.50 0.72 -23.18 16 25 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 C 0.03 0.32 6.22 -2.75 -0.02 0.30 16 30 H 0.06 0.43 7.94 -51.93 -0.41 0.02 16 31 H 0.08 0.75 4.74 -51.93 -0.25 0.50 16 32 H 0.07 0.34 6.44 -51.93 -0.33 0.01 16 33 H 0.12 0.59 8.11 -51.93 -0.42 0.16 16 34 H 0.10 0.43 7.39 -51.93 -0.38 0.05 16 35 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.21 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 39 H 0.04 0.56 5.87 -51.93 -0.30 0.25 16 40 H 0.12 2.28 5.96 -51.93 -0.31 1.97 16 41 H 0.05 0.72 7.81 -51.93 -0.41 0.31 16 42 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 43 H 0.39 9.20 7.90 -40.82 -0.32 8.87 16 44 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 45 H 0.05 0.59 6.70 -51.93 -0.35 0.25 16 46 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 372.93 15.07 5.62 5.62 Total: -1.00 -35.29 372.93 -9.03 -44.33 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.25 Total: 11.12 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -2.29 Total: 8.32 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -1.25 Total: -62.56 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: 0.16 Total: -22.33 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.29 -9.03 -44.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698569670.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.774 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds