Wall clock time and date at job start Tue Mar 31 2020 18:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34784 * 119.99864 * 2 1 4 4 O 1.21279 * 119.99925 * 179.72608 * 3 2 1 5 5 C 1.50700 * 119.99961 * 359.72839 * 3 2 1 6 6 C 1.50697 * 109.47266 * 180.02562 * 5 3 2 7 7 C 1.34664 * 126.59166 * 85.02190 * 6 5 3 8 8 N 1.34130 * 108.02017 * 179.97438 * 7 6 5 9 9 C 1.30496 * 109.25422 * 0.02562 * 8 7 6 10 10 N 1.35038 * 108.70333 * 359.76798 * 9 8 7 11 11 H 0.96999 * 126.40264 * 180.27046 * 10 9 8 12 12 C 1.46494 * 120.00444 * 179.72710 * 2 1 3 13 13 H 1.08999 * 110.28088 * 182.36032 * 12 2 1 14 14 C 1.54595 * 110.30980 * 304.55973 * 12 2 1 15 15 C 1.54940 * 102.92421 * 96.95415 * 14 12 2 16 16 N 1.48535 * 103.22592 * 37.41765 * 15 14 12 17 17 C 1.46899 * 111.00006 * 200.27970 * 16 15 14 18 18 C 1.50699 * 109.46835 * 307.39536 * 17 16 15 19 19 O 1.21287 * 120.00365 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99587 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99892 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99538 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00069 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99900 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99877 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47184 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47048 * 120.00456 * 25 23 21 28 28 H 1.48505 * 109.47259 * 240.00150 * 25 23 21 29 29 C 1.47907 * 105.81827 * 320.79380 * 16 15 14 30 30 H 1.09000 * 109.47297 * 90.00011 * 1 2 3 31 31 H 1.09002 * 109.47192 * 209.99937 * 1 2 3 32 32 H 1.08996 * 109.47342 * 329.99648 * 1 2 3 33 33 H 1.09004 * 109.46932 * 300.00223 * 5 3 2 34 34 H 1.08997 * 109.47392 * 59.99562 * 5 3 2 35 35 H 1.07995 * 125.99304 * 359.96539 * 7 6 5 36 36 H 1.07998 * 125.65003 * 179.97438 * 9 8 7 37 37 H 1.08997 * 110.72456 * 215.31553 * 14 12 2 38 38 H 1.09004 * 110.72161 * 338.59748 * 14 12 2 39 39 H 1.08999 * 110.66570 * 278.98094 * 15 14 12 40 40 H 1.09002 * 110.81017 * 155.91656 * 15 14 12 41 41 H 1.09000 * 109.46844 * 67.39748 * 17 16 15 42 42 H 1.08996 * 109.47051 * 187.39358 * 17 16 15 43 43 H 0.96998 * 120.00587 * 0.02562 * 20 18 17 44 44 H 0.97001 * 119.99847 * 179.97438 * 24 23 21 45 45 H 1.09001 * 109.91491 * 265.97829 * 29 16 15 46 46 H 1.08996 * 109.91586 * 144.68480 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 0.0050 5 6 1.3853 2.4724 -0.0062 6 6 2.3645 3.6178 -0.0055 7 6 2.9614 4.1643 -1.0819 8 7 3.7574 5.1563 -0.6559 9 6 3.6768 5.2449 0.6435 10 7 2.8145 4.3060 1.0889 11 1 2.5619 4.1479 2.0120 12 6 2.1975 -1.2686 0.0060 13 1 3.2711 -1.0847 0.0473 14 6 1.7536 -2.1389 1.2042 15 6 0.7020 -3.0861 0.5737 16 7 1.2643 -3.3711 -0.7712 17 6 0.2201 -3.8467 -1.6884 18 6 -0.5128 -5.0032 -1.0588 19 8 -0.1962 -5.3932 0.0451 20 7 -1.5203 -5.6041 -1.7225 21 6 -2.1867 -6.6566 -1.1500 22 1 -1.9047 -7.0038 -0.1671 23 6 -3.2250 -7.2764 -1.8345 24 7 -3.5678 -6.8542 -3.0308 25 14 -4.1335 -8.7099 -1.0541 26 1 -3.5598 -8.9885 0.2869 27 1 -5.5719 -8.3678 -0.9154 28 1 -3.9915 -9.9128 -1.9134 29 6 1.8446 -2.0956 -1.2442 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 0.7623 2.5279 -0.8989 34 1 0.7549 2.5322 0.8810 35 1 2.8236 3.8575 -2.1081 36 1 4.2088 5.9541 1.2603 37 1 2.5951 -2.7065 1.6013 38 1 1.3012 -1.5230 1.9815 39 1 -0.2635 -2.5872 0.4892 40 1 0.6098 -4.0038 1.1546 41 1 -0.4822 -3.0379 -1.8901 42 1 0.6777 -4.1718 -2.6227 43 1 -1.7733 -5.2925 -2.6056 44 1 -4.2924 -7.2871 -3.5088 45 1 1.1156 -1.5585 -1.8510 46 1 2.7450 -2.2906 -1.8267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698569670.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:16 Heat of formation + Delta-G solvation = -13.414476 kcal Electronic energy + Delta-G solvation = -28646.787216 eV Core-core repulsion = 24572.044538 eV Total energy + Delta-G solvation = -4074.742678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.97452 -41.46247 -40.35274 -38.98290 -36.27798 -35.74178 -33.89213 -33.35653 -33.00219 -32.10618 -29.93554 -28.53866 -28.09096 -27.16365 -25.87702 -22.88689 -22.46836 -22.35640 -21.58322 -21.06019 -20.12848 -19.83551 -18.75189 -18.44744 -17.79544 -17.31814 -16.76055 -16.61036 -16.33668 -16.21835 -15.74545 -15.65512 -15.42387 -15.20353 -14.83808 -14.52828 -14.28718 -14.22397 -14.03563 -13.76471 -13.56181 -13.41684 -13.24729 -13.21191 -13.06709 -12.92049 -12.66703 -12.43063 -12.36773 -12.19639 -12.09081 -11.86733 -11.45335 -11.02789 -10.96704 -10.82311 -10.19279 -9.99851 -9.77056 -9.32691 -9.25682 -8.46392 -5.94573 1.03614 1.36642 1.42735 1.55990 1.56654 1.91278 2.04406 2.25610 2.28776 2.33816 2.87991 3.20940 3.33897 3.48751 3.63688 3.73431 3.83930 4.01348 4.06643 4.09395 4.15797 4.28905 4.34119 4.38438 4.48330 4.53785 4.56431 4.59854 4.63337 4.67898 4.70771 4.81388 4.90893 5.00796 5.14609 5.25558 5.27857 5.41752 5.45496 5.77876 5.86353 5.96632 6.10712 6.34135 6.58459 6.61051 7.12027 7.13762 7.14726 7.56315 8.11939 8.71119 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031099 B = 0.001961 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.145001 B =14272.606843 C =14505.716172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.603 5.603 3 C 0.513 3.487 4 O -0.577 6.577 5 C -0.055 4.055 6 C -0.008 4.008 7 C -0.041 4.041 8 N -0.542 5.542 9 C 0.189 3.811 10 N -0.554 5.554 11 H 0.434 0.566 12 C 0.136 3.864 13 H 0.095 0.905 14 C -0.122 4.122 15 C 0.040 3.960 16 N -0.513 5.513 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.613 6.613 20 N -0.572 5.572 21 C -0.329 4.329 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.273 1.273 29 C 0.031 3.969 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.165 0.835 36 H 0.242 0.758 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.044 0.956 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.064 0.936 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.385 22.863 6.814 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.335 5.335 3 C 0.302 3.698 4 O -0.456 6.456 5 C -0.095 4.095 6 C -0.124 4.124 7 C -0.189 4.189 8 N -0.262 5.262 9 C -0.095 4.095 10 N -0.159 5.159 11 H 0.274 0.726 12 C 0.032 3.968 13 H 0.113 0.887 14 C -0.160 4.160 15 C -0.087 4.087 16 N -0.238 5.238 17 C -0.082 4.082 18 C 0.228 3.772 19 O -0.499 6.499 20 N -0.209 5.209 21 C -0.459 4.459 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.199 1.199 29 C -0.097 4.097 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.183 0.817 36 H 0.258 0.742 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.123 0.877 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.946 22.623 6.878 24.644 hybrid contribution -1.683 -0.951 0.366 1.968 sum 5.263 21.672 7.243 23.448 Atomic orbital electron populations 1.22238 0.77631 1.05078 1.03474 1.47983 1.07971 1.04785 1.72782 1.21104 0.87662 0.85961 0.75063 1.90730 1.16005 1.87733 1.51162 1.20171 0.95520 0.85297 1.08548 1.20698 1.04632 0.99476 0.87641 1.22243 0.99629 0.97414 0.99608 1.70223 1.23293 1.21314 1.11346 1.25633 0.95974 0.96171 0.91757 1.43200 1.35146 1.27339 1.10195 0.72573 1.21729 0.97584 0.82958 0.94542 0.88694 1.22824 0.99289 0.96875 0.97046 1.23413 0.95543 0.99311 0.90479 1.64596 1.29459 1.27198 1.02515 1.21975 0.93624 0.95628 0.96941 1.20662 0.82541 0.87105 0.86899 1.90443 1.68821 1.68176 1.22453 1.41922 1.30249 1.30056 1.18681 1.19683 1.13820 1.09723 1.02674 0.90199 1.26015 0.97794 1.01330 0.96146 1.69677 1.30517 1.43007 1.12903 0.84890 0.77927 0.77529 0.78118 1.19772 1.19590 1.19884 1.23277 1.00744 0.88751 0.96969 0.91231 0.91127 0.87412 0.84015 0.84690 0.81747 0.74157 0.90320 0.89251 0.93777 0.90314 0.90891 0.87736 0.77038 0.91348 0.91802 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 9.22 127.77 1.18 1.83 16 2 N -0.60 -10.25 2.72 -817.70 -2.23 -12.48 16 3 C 0.51 9.51 7.67 87.66 0.67 10.18 16 4 O -0.58 -16.39 15.39 -3.03 -0.05 -16.44 16 5 C -0.05 -0.56 4.82 29.10 0.14 -0.42 16 6 C -0.01 -0.12 5.73 40.95 0.23 0.11 16 7 C -0.04 -0.89 11.79 83.52 0.98 0.09 16 8 N -0.54 -12.59 11.25 -200.32 -2.25 -14.84 16 9 C 0.19 2.81 13.04 180.26 2.35 5.16 16 10 N -0.55 -6.70 6.15 -186.50 -1.15 -7.85 16 11 H 0.43 2.17 8.96 -92.71 -0.83 1.34 16 12 C 0.14 3.04 3.44 45.87 0.16 3.20 16 13 H 0.09 2.45 6.97 -2.39 -0.02 2.43 16 14 C -0.12 -2.85 6.13 31.80 0.20 -2.65 16 15 C 0.04 1.21 4.93 86.65 0.43 1.63 16 16 N -0.51 -15.96 5.26 -887.55 -4.67 -20.63 16 17 C 0.05 1.64 5.52 85.56 0.47 2.11 16 18 C 0.44 20.00 7.49 87.66 0.66 20.66 16 19 O -0.61 -32.02 13.09 -3.05 -0.04 -32.06 16 20 N -0.57 -28.28 5.29 -306.99 -1.62 -29.90 16 21 C -0.33 -18.14 9.68 84.04 0.81 -17.33 16 22 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 24 N -0.92 -48.49 13.05 21.66 0.28 -48.21 16 25 Si 0.99 41.96 29.55 68.60 2.03 43.99 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 29 C 0.03 0.75 6.22 86.45 0.54 1.28 16 30 H 0.07 0.71 7.94 -2.39 -0.02 0.69 16 31 H 0.07 1.05 4.74 -2.39 -0.01 1.04 16 32 H 0.11 0.47 6.44 -2.39 -0.02 0.45 16 33 H 0.14 0.82 8.11 -2.38 -0.02 0.80 16 34 H 0.14 0.46 7.39 -2.39 -0.02 0.44 16 35 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.24 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.09 1.77 7.87 -2.38 -0.02 1.75 16 39 H 0.04 1.27 5.87 -2.39 -0.01 1.26 16 40 H 0.08 3.10 5.96 -2.39 -0.01 3.08 16 41 H 0.07 2.05 7.81 -2.39 -0.02 2.03 16 42 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 43 H 0.40 18.63 7.90 -92.71 -0.73 17.90 16 44 H 0.28 13.67 8.31 -92.71 -0.77 12.89 16 45 H 0.06 1.36 6.70 -2.39 -0.02 1.34 16 46 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -79.66 372.93 -0.93 -80.59 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -0.52 Total: 32.20 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 9.29 Total: 25.64 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -11.64 Total: -133.92 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.09 Total: -48.50 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -79.66 -0.93 -80.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698569670.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.177 kcal (2) G-P(sol) polarization free energy of solvation -79.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds