Wall clock time and date at job start Tue Mar 31 2020 18:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35738 * 116.99721 * 2 1 4 4 C 1.39445 * 120.80428 * 180.02562 * 3 2 1 5 5 N 1.31958 * 119.08142 * 180.02562 * 4 3 2 6 6 C 1.32543 * 120.83637 * 359.97438 * 5 4 3 7 7 C 1.48295 * 119.11292 * 179.97438 * 6 5 4 8 8 O 1.21503 * 120.00063 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00004 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00070 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47305 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47462 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00163 * 169.99896 * 12 11 10 14 14 C 1.53245 * 109.33848 * 172.74528 * 13 12 11 15 15 N 1.47085 * 108.52064 * 53.82868 * 14 13 12 16 16 C 1.36932 * 120.88213 * 128.79288 * 15 14 13 17 17 H 1.08002 * 119.99977 * 333.51665 * 16 15 14 18 18 C 1.38807 * 119.99998 * 153.50990 * 16 15 14 19 19 N 1.31621 * 119.99922 * 159.47661 * 18 16 15 20 20 Si 1.86799 * 120.00305 * 339.47796 * 18 16 15 21 21 H 1.48496 * 109.47486 * 91.94910 * 20 18 16 22 22 H 1.48498 * 109.47306 * 211.95251 * 20 18 16 23 23 H 1.48508 * 109.46864 * 331.95033 * 20 18 16 24 24 C 1.47080 * 118.23666 * 308.81221 * 15 14 13 25 25 C 1.46896 * 110.99839 * 45.68987 * 12 11 10 26 26 N 1.32546 * 121.77620 * 0.27859 * 6 5 4 27 27 C 1.31954 * 120.83413 * 359.43853 * 26 6 5 28 28 H 1.09004 * 109.47234 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47067 * 299.99892 * 1 2 3 30 30 H 1.09001 * 109.47431 * 59.99565 * 1 2 3 31 31 H 1.07997 * 120.46229 * 359.97438 * 4 3 2 32 32 H 0.97004 * 120.00177 * 359.97438 * 9 7 6 33 33 H 1.08999 * 109.47402 * 59.99143 * 10 9 7 34 34 H 1.09000 * 109.46851 * 299.99234 * 10 9 7 35 35 H 1.08999 * 109.47456 * 59.99341 * 11 10 9 36 36 H 1.09008 * 109.47004 * 299.99588 * 11 10 9 37 37 H 1.09000 * 109.49448 * 52.78501 * 13 12 11 38 38 H 1.08995 * 109.49153 * 292.70371 * 13 12 11 39 39 H 1.08998 * 109.62846 * 173.53869 * 14 13 12 40 40 H 1.08997 * 109.62949 * 293.92586 * 14 13 12 41 41 H 0.97009 * 119.99909 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.62655 * 170.89395 * 24 15 14 43 43 H 1.08993 * 109.63223 * 291.48019 * 24 15 14 44 44 H 1.09001 * 109.49168 * 67.30395 * 25 12 11 45 45 H 1.08994 * 109.52148 * 307.23052 * 25 12 11 46 46 H 1.07998 * 120.46137 * 180.27694 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.4366 1.3021 -0.0005 5 7 4.0000 2.4953 0.0000 6 6 3.2609 3.5956 0.0005 7 6 3.9341 4.9169 0.0017 8 8 5.1475 4.9806 0.0017 9 7 3.2000 6.0472 0.0028 10 6 3.8651 7.3526 0.0033 11 6 2.8114 8.4618 0.0039 12 7 3.4782 9.7707 0.0051 13 6 2.5138 10.8531 -0.2325 14 6 3.2113 12.2046 -0.0444 15 7 4.4062 12.2369 -0.9015 16 6 4.6312 13.2842 -1.7544 17 1 3.7998 13.8594 -2.1345 18 6 5.9279 13.6068 -2.1304 19 7 6.1406 14.3114 -3.2217 20 14 7.3709 13.0411 -1.0879 21 1 7.8605 11.7318 -1.5890 22 1 8.4641 14.0428 -1.1703 23 1 6.9353 12.8989 0.3247 24 6 5.3528 11.1143 -0.8183 25 6 4.5710 9.8057 -0.9759 26 7 1.9364 3.5467 0.0060 27 6 1.3022 2.3895 0.0001 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 4.0447 0.4096 -0.0005 32 1 2.2313 5.9964 0.0024 33 1 4.4876 7.4436 -0.8867 34 1 4.4881 7.4425 0.8932 35 1 2.1885 8.3709 0.8938 36 1 2.1886 8.3718 -0.8862 37 1 1.6894 10.7676 0.4754 38 1 2.1292 10.7807 -1.2498 39 1 2.5338 13.0092 -0.3303 40 1 3.5023 12.3243 0.9991 41 1 7.0468 14.5372 -3.4843 42 1 6.0910 11.1980 -1.6158 43 1 5.8526 11.1277 0.1501 44 1 4.1578 9.7480 -1.9829 45 1 5.2386 8.9607 -0.8077 46 1 0.2227 2.3568 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752367769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:19 Heat of formation + Delta-G solvation = 34.952835 kcal Electronic energy + Delta-G solvation = -28054.627626 eV Core-core repulsion = 23981.982312 eV Total energy + Delta-G solvation = -4072.645314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.98654 -39.94571 -39.01163 -38.39530 -35.69651 -34.62259 -33.92323 -32.02737 -31.53470 -30.50528 -29.26926 -28.38351 -26.35913 -25.34598 -24.64248 -23.47121 -22.96480 -21.53080 -21.13361 -19.45601 -19.03304 -18.75157 -18.48089 -16.87026 -16.83416 -16.33102 -15.93341 -15.84286 -15.43088 -15.19122 -14.97514 -14.50470 -14.38815 -14.26150 -14.06004 -14.00655 -13.79333 -13.59405 -13.09662 -12.85462 -12.44012 -12.32727 -12.08497 -11.92079 -11.80339 -11.68969 -11.59343 -11.39019 -10.86280 -10.58524 -10.41133 -10.25288 -10.01505 -9.88579 -9.80037 -9.45341 -9.41936 -9.18886 -8.62278 -8.04198 -6.93434 -5.91450 -3.26793 -0.04568 0.36998 2.21941 2.29114 2.52695 3.35588 3.36029 3.38135 3.51724 3.54104 3.58600 3.83060 4.02065 4.28086 4.36954 4.38231 4.54363 4.57769 4.76405 4.79215 4.98724 4.99797 5.06172 5.35076 5.35800 5.42603 5.63487 5.72049 5.80780 5.87173 5.95272 6.02102 6.03846 6.09835 6.14828 6.26704 6.37735 6.39718 6.60371 6.68101 6.90392 7.05862 7.34092 7.40528 7.44148 7.91603 7.97305 8.35425 8.96172 9.75256 10.14492 11.24468 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026486 B = 0.001952 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.923528 B =14339.079328 C =14988.920553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.297 6.297 3 C 0.044 3.956 4 C 0.125 3.875 5 N -0.426 5.426 6 C 0.244 3.756 7 C 0.586 3.414 8 O -0.502 6.502 9 N -0.706 5.706 10 C 0.113 3.887 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.044 3.956 14 C 0.152 3.848 15 N -0.609 5.609 16 C -0.260 4.260 17 H 0.085 0.915 18 C 0.022 3.978 19 N -0.910 5.910 20 Si 0.883 3.117 21 H -0.287 1.287 22 H -0.304 1.304 23 H -0.269 1.269 24 C 0.129 3.871 25 C 0.032 3.968 26 N -0.456 5.456 27 C 0.064 3.936 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.186 0.814 32 H 0.409 0.591 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.065 0.935 40 H 0.031 0.969 41 H 0.262 0.738 42 H 0.075 0.925 43 H 0.034 0.966 44 H 0.037 0.963 45 H 0.074 0.926 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.660 -29.991 8.038 34.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.207 6.207 3 C -0.007 4.007 4 C -0.045 4.045 5 N -0.141 5.141 6 C -0.025 4.025 7 C 0.367 3.633 8 O -0.373 6.373 9 N -0.360 5.360 10 C -0.010 4.010 11 C -0.083 4.083 12 N -0.255 5.255 13 C -0.086 4.086 14 C 0.026 3.974 15 N -0.333 5.333 16 C -0.388 4.388 17 H 0.103 0.897 18 C -0.177 4.177 19 N -0.553 5.553 20 Si 0.714 3.286 21 H -0.215 1.215 22 H -0.232 1.232 23 H -0.194 1.194 24 C 0.004 3.996 25 C -0.097 4.097 26 N -0.173 5.173 27 C -0.104 4.104 28 H 0.129 0.871 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.203 0.797 32 H 0.245 0.755 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.092 0.908 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -13.894 -29.007 8.390 33.239 hybrid contribution -0.780 -1.291 -0.336 1.545 sum -14.674 -30.298 8.055 34.614 Atomic orbital electron populations 1.23293 0.77092 1.05276 1.02048 1.86111 1.22397 1.24788 1.87386 1.21253 0.95265 0.86954 0.97249 1.22943 0.89315 0.96333 0.95892 1.68286 1.39757 0.97561 1.08457 1.22736 0.86030 0.94302 0.99456 1.17031 0.86268 0.81802 0.78181 1.90857 1.12628 1.86132 1.47693 1.45692 1.11004 1.05164 1.74118 1.21680 0.95636 0.79800 1.03845 1.22232 0.95604 0.89282 1.01182 1.61997 1.11455 1.01326 1.50713 1.22652 0.93962 0.92897 0.99055 1.20994 0.89130 0.93337 0.93979 1.44416 1.23221 1.20043 1.45602 1.18917 0.93216 1.07847 1.18783 0.89712 1.25260 0.97362 0.97719 0.97358 1.69840 1.20972 1.42132 1.22356 0.86957 0.82732 0.76610 0.82341 1.21512 1.23187 1.19413 1.21445 0.92623 0.85862 0.99703 1.22834 0.93635 1.00049 0.93187 1.68122 1.10212 1.29168 1.09842 1.23458 1.01401 0.86584 0.98931 0.87136 0.91861 0.91840 0.79731 0.75489 0.90330 0.89911 0.90304 0.94452 0.91443 0.94732 0.91611 0.95122 0.92794 0.90681 0.94799 0.94431 0.90821 0.80442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.02 9.84 101.05 0.99 1.01 16 2 O -0.30 -1.44 10.51 -18.92 -0.20 -1.64 16 3 C 0.04 0.28 6.75 -38.68 -0.26 0.02 16 4 C 0.12 0.99 11.28 -17.05 -0.19 0.80 16 5 N -0.43 -4.99 10.11 -11.03 -0.11 -5.10 16 6 C 0.24 2.88 7.59 -157.04 -1.19 1.69 16 7 C 0.59 8.05 7.84 -12.13 -0.10 7.95 16 8 O -0.50 -8.74 16.86 5.36 0.09 -8.65 16 9 N -0.71 -8.04 5.54 -61.11 -0.34 -8.38 16 10 C 0.11 1.44 4.92 -4.04 -0.02 1.42 16 11 C 0.05 0.56 5.38 -3.83 -0.02 0.54 16 12 N -0.53 -8.56 4.78 -234.32 -1.12 -9.68 16 13 C 0.04 0.71 5.58 -3.70 -0.02 0.69 16 14 C 0.15 3.01 6.69 -3.60 -0.02 2.99 16 15 N -0.61 -14.76 2.82 -172.01 -0.48 -15.24 16 16 C -0.26 -7.35 10.08 -15.06 -0.15 -7.50 16 17 H 0.09 2.54 8.05 -52.49 -0.42 2.12 16 18 C 0.02 0.64 5.24 -17.43 -0.09 0.55 16 19 N -0.91 -28.25 13.97 55.49 0.78 -27.48 16 20 Si 0.88 22.94 24.31 -169.99 -4.13 18.81 16 21 H -0.29 -7.21 6.58 56.52 0.37 -6.84 16 22 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 23 H -0.27 -6.93 6.61 56.52 0.37 -6.55 16 24 C 0.13 2.92 4.35 -3.60 -0.02 2.91 16 25 C 0.03 0.59 5.04 -3.70 -0.02 0.57 16 26 N -0.46 -4.20 9.55 -11.03 -0.11 -4.30 16 27 C 0.06 0.40 10.31 -17.05 -0.18 0.23 16 28 H 0.11 -0.04 8.14 -51.93 -0.42 -0.47 16 29 H 0.06 0.01 7.71 -51.93 -0.40 -0.39 16 30 H 0.06 0.02 7.71 -51.93 -0.40 -0.38 16 31 H 0.19 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.41 3.74 7.77 -40.82 -0.32 3.42 16 33 H 0.08 1.11 6.18 -51.93 -0.32 0.79 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.44 8.08 -51.92 -0.42 0.02 16 37 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.27 7.95 -51.93 -0.41 0.85 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 42 H 0.08 1.84 4.60 -51.93 -0.24 1.60 16 43 H 0.03 0.78 6.94 -51.93 -0.36 0.42 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.23 5.73 -51.93 -0.30 0.93 16 46 H 0.18 0.46 6.47 -52.49 -0.34 0.12 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -36.15 370.16 -7.83 -43.98 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.50 Total: -1.77 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: -1.28 Total: 13.87 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -1.38 Total: -70.19 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -0.11 Total: -10.29 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.13 Total: 18.81 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.15 -7.83 -43.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752367769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.937 kcal (2) G-P(sol) polarization free energy of solvation -36.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds