Wall clock time and date at job start Tue Mar 31 2020 18:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35738 * 116.99721 * 2 1 4 4 C 1.39445 * 120.80428 * 180.02562 * 3 2 1 5 5 N 1.31958 * 119.08142 * 180.02562 * 4 3 2 6 6 C 1.32543 * 120.83637 * 359.97438 * 5 4 3 7 7 C 1.48295 * 119.11292 * 179.97438 * 6 5 4 8 8 O 1.21503 * 120.00063 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00004 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00070 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47305 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47462 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00163 * 169.99896 * 12 11 10 14 14 C 1.53245 * 109.33848 * 172.74528 * 13 12 11 15 15 N 1.47085 * 108.52064 * 53.82868 * 14 13 12 16 16 C 1.36932 * 120.88213 * 128.79288 * 15 14 13 17 17 H 1.08002 * 119.99977 * 333.51665 * 16 15 14 18 18 C 1.38807 * 119.99998 * 153.50990 * 16 15 14 19 19 N 1.31621 * 119.99922 * 159.47661 * 18 16 15 20 20 Si 1.86799 * 120.00305 * 339.47796 * 18 16 15 21 21 H 1.48496 * 109.47486 * 91.94910 * 20 18 16 22 22 H 1.48498 * 109.47306 * 211.95251 * 20 18 16 23 23 H 1.48508 * 109.46864 * 331.95033 * 20 18 16 24 24 C 1.47080 * 118.23666 * 308.81221 * 15 14 13 25 25 C 1.46896 * 110.99839 * 45.68987 * 12 11 10 26 26 N 1.32546 * 121.77620 * 0.27859 * 6 5 4 27 27 C 1.31954 * 120.83413 * 359.43853 * 26 6 5 28 28 H 1.09004 * 109.47234 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47067 * 299.99892 * 1 2 3 30 30 H 1.09001 * 109.47431 * 59.99565 * 1 2 3 31 31 H 1.07997 * 120.46229 * 359.97438 * 4 3 2 32 32 H 0.97004 * 120.00177 * 359.97438 * 9 7 6 33 33 H 1.08999 * 109.47402 * 59.99143 * 10 9 7 34 34 H 1.09000 * 109.46851 * 299.99234 * 10 9 7 35 35 H 1.08999 * 109.47456 * 59.99341 * 11 10 9 36 36 H 1.09008 * 109.47004 * 299.99588 * 11 10 9 37 37 H 1.09000 * 109.49448 * 52.78501 * 13 12 11 38 38 H 1.08995 * 109.49153 * 292.70371 * 13 12 11 39 39 H 1.08998 * 109.62846 * 173.53869 * 14 13 12 40 40 H 1.08997 * 109.62949 * 293.92586 * 14 13 12 41 41 H 0.97009 * 119.99909 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.62655 * 170.89395 * 24 15 14 43 43 H 1.08993 * 109.63223 * 291.48019 * 24 15 14 44 44 H 1.09001 * 109.49168 * 67.30395 * 25 12 11 45 45 H 1.08994 * 109.52148 * 307.23052 * 25 12 11 46 46 H 1.07998 * 120.46137 * 180.27694 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.4366 1.3021 -0.0005 5 7 4.0000 2.4953 0.0000 6 6 3.2609 3.5956 0.0005 7 6 3.9341 4.9169 0.0017 8 8 5.1475 4.9806 0.0017 9 7 3.2000 6.0472 0.0028 10 6 3.8651 7.3526 0.0033 11 6 2.8114 8.4618 0.0039 12 7 3.4782 9.7707 0.0051 13 6 2.5138 10.8531 -0.2325 14 6 3.2113 12.2046 -0.0444 15 7 4.4062 12.2369 -0.9015 16 6 4.6312 13.2842 -1.7544 17 1 3.7998 13.8594 -2.1345 18 6 5.9279 13.6068 -2.1304 19 7 6.1406 14.3114 -3.2217 20 14 7.3709 13.0411 -1.0879 21 1 7.8605 11.7318 -1.5890 22 1 8.4641 14.0428 -1.1703 23 1 6.9353 12.8989 0.3247 24 6 5.3528 11.1143 -0.8183 25 6 4.5710 9.8057 -0.9759 26 7 1.9364 3.5467 0.0060 27 6 1.3022 2.3895 0.0001 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 4.0447 0.4096 -0.0005 32 1 2.2313 5.9964 0.0024 33 1 4.4876 7.4436 -0.8867 34 1 4.4881 7.4425 0.8932 35 1 2.1885 8.3709 0.8938 36 1 2.1886 8.3718 -0.8862 37 1 1.6894 10.7676 0.4754 38 1 2.1292 10.7807 -1.2498 39 1 2.5338 13.0092 -0.3303 40 1 3.5023 12.3243 0.9991 41 1 7.0468 14.5372 -3.4843 42 1 6.0910 11.1980 -1.6158 43 1 5.8526 11.1277 0.1501 44 1 4.1578 9.7480 -1.9829 45 1 5.2386 8.9607 -0.8077 46 1 0.2227 2.3568 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752367769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:18 Heat of formation + Delta-G solvation = 4.290018 kcal Electronic energy + Delta-G solvation = -28055.957266 eV Core-core repulsion = 23981.982312 eV Total energy + Delta-G solvation = -4073.974954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.59764 -40.81598 -39.97589 -39.42386 -37.06882 -35.69244 -34.95194 -33.64661 -32.54677 -32.05151 -30.46937 -28.81340 -27.75924 -26.06523 -25.39978 -24.99484 -24.56336 -22.67304 -22.17659 -21.05396 -19.69538 -19.29122 -19.14919 -18.76369 -17.67183 -17.33107 -16.99201 -16.74696 -16.54999 -16.06590 -15.87591 -15.78832 -15.65435 -15.54831 -15.50453 -14.97012 -14.80846 -14.63268 -14.37483 -14.26050 -13.77496 -13.49758 -13.41782 -12.98845 -12.78073 -12.57876 -12.48036 -12.42026 -12.24841 -12.22569 -12.10793 -11.78366 -11.61158 -11.43064 -11.39969 -10.73733 -10.51068 -10.30609 -9.86243 -9.38924 -8.90235 -8.17713 -5.48468 -0.71139 -0.17153 1.30144 1.40785 1.43850 1.50217 1.54711 1.97219 2.40852 2.62113 2.67739 2.91769 3.04028 3.07703 3.28707 3.36922 3.60365 3.73257 3.86191 4.02780 4.14531 4.22761 4.30273 4.38609 4.38872 4.45165 4.53097 4.54820 4.57605 4.71231 4.76857 4.79326 4.85052 4.88062 4.91591 4.98611 5.01927 5.20987 5.31349 5.52822 5.82258 5.95812 6.02896 6.06900 6.16692 6.23197 6.72339 6.89285 6.98991 7.60704 8.03673 9.02005 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026486 B = 0.001952 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.923528 B =14339.079328 C =14988.920553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.301 6.301 3 C 0.066 3.934 4 C 0.109 3.891 5 N -0.461 5.461 6 C 0.215 3.785 7 C 0.583 3.417 8 O -0.552 6.552 9 N -0.690 5.690 10 C 0.119 3.881 11 C 0.055 3.945 12 N -0.536 5.536 13 C 0.054 3.946 14 C 0.144 3.856 15 N -0.623 5.623 16 C -0.246 4.246 17 H 0.056 0.944 18 C -0.035 4.035 19 N -0.956 5.956 20 Si 0.944 3.056 21 H -0.276 1.276 22 H -0.310 1.310 23 H -0.264 1.264 24 C 0.124 3.876 25 C 0.044 3.956 26 N -0.455 5.455 27 C 0.066 3.934 28 H 0.128 0.872 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.206 0.794 32 H 0.422 0.578 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.050 0.950 37 H 0.108 0.892 38 H 0.026 0.974 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.261 0.739 42 H 0.051 0.949 43 H 0.034 0.966 44 H 0.027 0.973 45 H 0.090 0.910 46 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.490 -33.069 9.706 39.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.211 6.211 3 C 0.013 3.987 4 C -0.059 4.059 5 N -0.176 5.176 6 C -0.053 4.053 7 C 0.366 3.634 8 O -0.427 6.427 9 N -0.343 5.343 10 C -0.005 4.005 11 C -0.073 4.073 12 N -0.261 5.261 13 C -0.075 4.075 14 C 0.019 3.981 15 N -0.349 5.349 16 C -0.376 4.376 17 H 0.074 0.926 18 C -0.230 4.230 19 N -0.603 5.603 20 Si 0.773 3.227 21 H -0.203 1.203 22 H -0.239 1.239 23 H -0.189 1.189 24 C -0.001 4.001 25 C -0.085 4.085 26 N -0.173 5.173 27 C -0.102 4.102 28 H 0.146 0.854 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.223 0.777 32 H 0.261 0.739 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.126 0.874 36 H 0.068 0.932 37 H 0.126 0.874 38 H 0.045 0.955 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.045 0.955 45 H 0.108 0.892 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -16.802 -32.136 10.096 37.643 hybrid contribution -0.155 -0.520 -0.836 0.997 sum -16.957 -32.656 9.259 37.944 Atomic orbital electron populations 1.23688 0.74785 1.07050 1.03478 1.86132 1.24693 1.23805 1.86445 1.21208 0.94806 0.87732 0.94925 1.23299 0.90726 0.95842 0.96048 1.68182 1.41176 0.98669 1.09596 1.22239 0.87022 0.93373 1.02646 1.17412 0.85868 0.82994 0.77122 1.90814 1.14703 1.87009 1.50207 1.45503 1.11491 1.04238 1.73104 1.21502 0.95733 0.80633 1.02594 1.22240 0.95245 0.86683 1.03123 1.61942 1.11439 1.03192 1.49545 1.22521 0.94318 0.90797 0.99846 1.21222 0.87679 0.95858 0.93331 1.44570 1.24802 1.19529 1.45963 1.18894 0.92306 1.08040 1.18355 0.92599 1.25848 0.99907 0.98853 0.98345 1.69959 1.21356 1.44801 1.24155 0.85965 0.79518 0.76369 0.80822 1.20325 1.23852 1.18852 1.21440 0.92650 0.87413 0.98602 1.22578 0.94506 0.98054 0.93370 1.68094 1.08874 1.30507 1.09801 1.24113 1.03030 0.85578 0.97516 0.85407 0.90317 0.90424 0.77709 0.73931 0.92021 0.90902 0.87426 0.93196 0.87367 0.95543 0.91714 0.94453 0.92982 0.93119 0.94802 0.95487 0.89154 0.76464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.84 113.37 1.12 1.11 16 2 O -0.30 -1.93 10.51 -90.62 -0.95 -2.88 16 3 C 0.07 0.67 6.75 22.85 0.15 0.83 16 4 C 0.11 1.61 11.28 84.96 0.96 2.57 16 5 N -0.46 -10.78 10.11 -188.81 -1.91 -12.69 16 6 C 0.22 4.98 7.59 137.56 1.04 6.02 16 7 C 0.58 16.05 7.84 86.92 0.68 16.73 16 8 O -0.55 -19.91 16.86 -3.72 -0.06 -19.97 16 9 N -0.69 -14.77 5.54 -465.54 -2.58 -17.35 16 10 C 0.12 2.84 4.92 86.38 0.43 3.26 16 11 C 0.05 1.17 5.38 86.30 0.46 1.63 16 12 N -0.54 -15.85 4.78 -895.25 -4.28 -20.13 16 13 C 0.05 1.61 5.58 86.39 0.48 2.09 16 14 C 0.14 5.50 6.69 86.35 0.58 6.08 16 15 N -0.62 -30.12 2.82 -698.12 -1.97 -32.09 16 16 C -0.25 -14.27 10.08 84.03 0.85 -13.42 16 17 H 0.06 3.49 8.05 -2.91 -0.02 3.47 16 18 C -0.03 -2.09 5.24 84.86 0.44 -1.64 16 19 N -0.96 -61.33 13.97 21.65 0.30 -61.03 16 20 Si 0.94 48.50 24.31 68.60 1.67 50.17 16 21 H -0.28 -13.55 6.58 99.48 0.65 -12.90 16 22 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 23 H -0.26 -13.15 6.61 99.48 0.66 -12.50 16 24 C 0.12 5.54 4.35 86.35 0.38 5.91 16 25 C 0.04 1.57 5.04 86.39 0.44 2.01 16 26 N -0.46 -7.44 9.55 -188.81 -1.80 -9.24 16 27 C 0.07 0.62 10.31 84.97 0.88 1.49 16 28 H 0.13 -0.61 8.14 -2.39 -0.02 -0.63 16 29 H 0.08 -0.33 7.71 -2.39 -0.02 -0.34 16 30 H 0.08 -0.30 7.71 -2.39 -0.02 -0.32 16 31 H 0.21 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.42 6.70 7.77 -92.71 -0.72 5.98 16 33 H 0.06 1.70 6.18 -2.39 -0.01 1.68 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.05 0.99 8.08 -2.38 -0.02 0.97 16 37 H 0.11 2.40 8.11 -2.39 -0.02 2.38 16 38 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 2.45 7.95 -2.39 -0.02 2.43 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.26 15.96 8.31 -92.70 -0.77 15.19 16 42 H 0.05 2.49 4.60 -2.39 -0.01 2.48 16 43 H 0.03 1.52 6.94 -2.39 -0.02 1.50 16 44 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.09 2.91 5.73 -2.39 -0.01 2.90 16 46 H 0.22 0.08 6.47 -2.91 -0.02 0.07 16 Total: -1.00 -82.40 370.16 -2.51 -84.91 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.20 Total: 5.63 kcal Atomic # 6 Polarization: 25.79 SS G_CDS: 8.88 Total: 34.67 kcal Atomic # 7 Polarization: -140.29 SS G_CDS: -12.24 Total: -152.53 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -1.02 Total: -22.85 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 1.67 Total: 50.17 kcal Total: -82.40 -2.51 -84.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752367769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.201 kcal (2) G-P(sol) polarization free energy of solvation -82.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds