Wall clock time and date at job start Tue Mar 31 2020 18:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99905 * 2 1 4 4 C 1.50702 * 109.47064 * 66.04358 * 3 2 1 5 5 O 1.21289 * 120.00053 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99620 * 180.02562 * 4 3 2 7 7 C 1.37101 * 119.99806 * 179.72817 * 6 4 3 8 8 H 1.08006 * 119.99836 * 359.97438 * 7 6 4 9 9 C 1.38949 * 120.00248 * 180.02562 * 7 6 4 10 10 N 1.31410 * 119.99851 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00026 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47604 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47114 * 120.00060 * 11 9 7 14 14 H 1.48502 * 109.47047 * 239.99268 * 11 9 7 15 15 C 1.46894 * 111.00070 * 236.04574 * 2 1 3 16 16 H 1.08994 * 109.49915 * 63.95432 * 15 2 1 17 17 C 1.53042 * 109.49848 * 303.88807 * 15 2 1 18 18 C 1.53033 * 109.53932 * 178.71647 * 17 15 2 19 19 C 1.53196 * 109.34073 * 61.31548 * 18 17 15 20 20 N 1.46926 * 108.77697 * 305.37977 * 19 18 17 21 21 C 1.34768 * 120.63133 * 233.62997 * 20 19 18 22 22 O 1.21611 * 120.00194 * 173.73089 * 21 20 19 23 23 C 1.47429 * 120.00369 * 353.73182 * 21 20 19 24 24 C 1.41293 * 126.40922 * 330.05221 * 23 21 20 25 25 N 1.30448 * 108.02103 * 179.85201 * 24 23 21 26 26 N 1.39937 * 108.89486 * 0.41360 * 25 24 23 27 27 H 0.97000 * 125.75440 * 179.73232 * 26 25 24 28 28 C 1.34255 * 108.49517 * 359.73202 * 26 25 24 29 29 C 1.46928 * 118.73342 * 53.60759 * 20 19 18 30 30 H 1.08994 * 109.47062 * 60.00431 * 1 2 3 31 31 H 1.09006 * 109.47018 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47127 * 299.99898 * 1 2 3 33 33 H 1.09003 * 109.47049 * 306.04636 * 3 2 1 34 34 H 1.08990 * 109.47591 * 186.04802 * 3 2 1 35 35 H 0.96996 * 120.00333 * 359.97438 * 6 4 3 36 36 H 0.97003 * 120.00235 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.46029 * 298.70300 * 17 15 2 38 38 H 1.08995 * 109.46157 * 58.66157 * 17 15 2 39 39 H 1.08999 * 109.47326 * 301.36252 * 18 17 15 40 40 H 1.09002 * 109.50157 * 181.27963 * 18 17 15 41 41 H 1.09002 * 109.58982 * 185.58976 * 19 18 17 42 42 H 1.09008 * 109.58470 * 65.16758 * 19 18 17 43 43 H 1.07994 * 125.99227 * 0.02562 * 24 23 21 44 44 H 1.07996 * 126.29467 * 179.97438 * 28 26 25 45 45 H 1.09008 * 109.58567 * 186.60666 * 29 20 19 46 46 H 1.08993 * 109.58889 * 66.18406 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 1.2984 5 8 1.0053 1.4453 2.1411 6 7 2.0179 3.3202 1.5232 7 6 1.6869 3.9368 2.7022 8 1 1.1204 3.4025 3.4506 9 6 2.0793 5.2495 2.9338 10 7 2.7681 5.8998 2.0230 11 14 1.6276 6.0898 4.5398 12 1 0.8555 5.1491 5.3907 13 1 2.8662 6.4980 5.2503 14 1 0.8019 7.2907 4.2549 15 6 1.9955 -0.7660 -1.1375 16 1 1.7047 -0.2803 -2.0689 17 6 1.4276 -2.1867 -1.1033 18 6 1.9502 -2.9759 -2.3058 19 6 3.4778 -3.0631 -2.2303 20 7 4.0241 -1.7039 -2.1171 21 6 4.9661 -1.2686 -2.9770 22 8 5.3279 -0.1080 -2.9461 23 6 5.5578 -2.1993 -3.9553 24 6 5.7322 -3.5915 -3.7891 25 7 6.2849 -4.0613 -4.8733 26 7 6.4962 -3.0062 -5.7679 27 1 6.8970 -3.0811 -6.6481 28 6 6.0508 -1.8728 -5.2027 29 6 3.5235 -0.8282 -1.0487 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.5611 1.9274 -0.8309 34 1 3.0796 1.3445 -0.1083 35 1 2.5233 3.8014 0.8495 36 1 3.0423 6.8161 2.1848 37 1 1.7389 -2.6802 -0.1826 38 1 0.3391 -2.1437 -1.1419 39 1 1.6598 -2.4699 -3.2265 40 1 1.5275 -3.9805 -2.2933 41 1 3.8619 -3.5372 -3.1335 42 1 3.7677 -3.6474 -1.3569 43 1 5.4538 -4.1665 -2.9184 44 1 6.0743 -0.8869 -5.6427 45 1 3.9377 0.1725 -1.1724 46 1 3.8172 -1.2301 -0.0791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752988176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:14 Heat of formation + Delta-G solvation = 29.426827 kcal Electronic energy + Delta-G solvation = -29087.829769 eV Core-core repulsion = 25014.944829 eV Total energy + Delta-G solvation = -4072.884940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82760 -40.06373 -38.60730 -37.53436 -35.72033 -33.81726 -32.68785 -32.19248 -31.17630 -30.97747 -29.77217 -28.11338 -25.81093 -24.97690 -24.19213 -22.64534 -22.52290 -21.78100 -20.18065 -19.53343 -19.05946 -18.41960 -17.77299 -16.75171 -16.12173 -16.06130 -15.46997 -15.25657 -14.98849 -14.86254 -14.64051 -14.48444 -14.29633 -14.04991 -13.79325 -13.57881 -13.32085 -13.19290 -13.02847 -12.82831 -12.52390 -11.95368 -11.62986 -11.55612 -11.47874 -11.39343 -11.25199 -11.10496 -10.92795 -10.80385 -10.32008 -10.29686 -10.19148 -10.16336 -9.96592 -9.43071 -9.19958 -8.70394 -8.39191 -7.92091 -7.79907 -6.35798 -3.76515 1.21119 1.80190 2.28502 2.79758 3.14461 3.20242 3.30412 3.37612 3.96297 4.00574 4.18174 4.28194 4.41804 4.58322 4.72200 4.73894 4.82749 4.93501 4.94748 5.16201 5.17930 5.22732 5.31300 5.33778 5.42796 5.57673 5.67692 5.72394 5.80094 5.83204 5.88379 5.95498 5.97814 6.03420 6.09960 6.24538 6.35799 6.39402 6.61427 6.64590 7.04120 7.29915 7.31108 7.44142 7.60843 8.11302 8.12724 8.68154 9.24062 9.61207 10.13009 10.82061 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.002442 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.086727 B =11460.937182 C =12657.795675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.511 5.511 3 C 0.040 3.960 4 C 0.446 3.554 5 O -0.578 6.578 6 N -0.565 5.565 7 C -0.297 4.297 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.901 5.901 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.072 3.928 16 H 0.040 0.960 17 C -0.116 4.116 18 C -0.132 4.132 19 C 0.095 3.905 20 N -0.605 5.605 21 C 0.594 3.406 22 O -0.542 6.542 23 C -0.287 4.287 24 C 0.080 3.920 25 N -0.296 5.296 26 N -0.464 5.464 27 H 0.445 0.555 28 C 0.129 3.871 29 C 0.117 3.883 30 H 0.013 0.987 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.392 0.608 36 H 0.270 0.730 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.196 0.804 44 H 0.191 0.809 45 H 0.096 0.904 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.119 -19.578 -17.453 26.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.235 5.235 3 C -0.091 4.091 4 C 0.232 3.768 5 O -0.462 6.462 6 N -0.202 5.202 7 C -0.426 4.426 8 H 0.121 0.879 9 C -0.181 4.181 10 N -0.543 5.543 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.037 4.037 16 H 0.058 0.942 17 C -0.153 4.153 18 C -0.171 4.171 19 C -0.028 4.028 20 N -0.338 5.338 21 C 0.382 3.618 22 O -0.419 6.419 23 C -0.302 4.302 24 C -0.108 4.108 25 N -0.117 5.117 26 N -0.170 5.170 27 H 0.289 0.711 28 C -0.024 4.024 29 C -0.005 4.005 30 H 0.031 0.969 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.225 0.775 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.212 0.788 44 H 0.208 0.792 45 H 0.114 0.886 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.550 -20.441 -16.988 26.965 hybrid contribution -0.257 1.936 -0.487 2.013 sum 4.293 -18.505 -17.474 25.811 Atomic orbital electron populations 1.22593 0.86543 1.01567 1.01968 1.61586 1.08706 1.12702 1.40527 1.21968 1.01021 0.88910 0.97205 1.19702 0.85344 0.82917 0.88867 1.90471 1.43983 1.64660 1.47119 1.41882 1.49372 1.10746 1.18174 1.19737 1.32579 0.95357 0.94964 0.87874 1.25264 0.96912 0.96707 0.99181 1.69628 1.38011 1.12212 1.34426 0.85812 0.78186 0.79005 0.81395 1.19244 1.20777 1.20849 1.21927 0.94475 0.94706 0.92608 0.94175 1.21660 1.00774 0.94403 0.98504 1.21920 0.94976 1.01017 0.99196 1.22173 0.94307 0.83461 1.02874 1.47825 1.39581 1.14773 1.31587 1.17279 0.78575 0.86388 0.79548 1.90814 1.62137 1.18049 1.70905 1.20295 1.17176 0.94499 0.98253 1.24292 0.96282 0.93026 0.97193 1.77181 1.22201 1.10923 1.01403 1.46220 1.48476 1.04997 1.17303 0.71061 1.23036 0.93229 0.92676 0.93419 1.21718 0.93057 0.96051 0.89715 0.96852 0.91811 0.88425 0.93458 0.89099 0.77461 0.91965 0.90532 0.91125 0.91655 0.90361 0.88826 0.90881 0.78778 0.79219 0.88556 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.84 60.07 0.53 0.87 16 2 N -0.51 -8.52 4.37 -236.19 -1.03 -9.56 16 3 C 0.04 0.75 5.26 -4.97 -0.03 0.72 16 4 C 0.45 10.71 7.51 -10.98 -0.08 10.63 16 5 O -0.58 -15.57 13.89 5.55 0.08 -15.49 16 6 N -0.57 -14.65 5.29 -10.96 -0.06 -14.71 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 9 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 10 N -0.90 -25.07 13.05 55.50 0.72 -24.35 16 11 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 C 0.07 0.96 2.09 -67.59 -0.14 0.81 16 16 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 17 C -0.12 -1.19 4.86 -26.69 -0.13 -1.32 16 18 C -0.13 -1.02 6.08 -26.61 -0.16 -1.19 16 19 C 0.09 0.73 5.22 -3.71 -0.02 0.71 16 20 N -0.60 -6.75 2.97 -174.03 -0.52 -7.27 16 21 C 0.59 7.49 7.62 -12.52 -0.10 7.39 16 22 O -0.54 -8.95 16.44 5.27 0.09 -8.86 16 23 C -0.29 -2.76 5.52 -105.07 -0.58 -3.34 16 24 C 0.08 0.64 9.58 -16.98 -0.16 0.48 16 25 N -0.30 -2.51 12.63 30.86 0.39 -2.12 16 26 N -0.46 -2.83 7.29 30.85 0.22 -2.61 16 27 H 0.44 1.15 8.96 -182.72 -1.64 -0.49 16 28 C 0.13 0.94 11.94 -16.56 -0.20 0.74 16 29 C 0.12 1.56 5.34 -3.71 -0.02 1.54 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.87 5.98 -51.93 -0.31 0.56 16 32 H 0.10 1.92 5.88 -51.93 -0.31 1.62 16 33 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 34 H 0.09 1.61 5.95 -51.93 -0.31 1.30 16 35 H 0.39 9.86 7.90 -40.82 -0.32 9.54 16 36 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.72 6.19 -51.93 -0.32 0.40 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.60 4.22 -51.93 -0.22 0.38 16 42 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 43 H 0.20 1.08 6.51 -52.49 -0.34 0.74 16 44 H 0.19 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.10 1.49 5.37 -51.92 -0.28 1.21 16 46 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 367.45 15.07 5.54 5.54 Total: -1.00 -35.70 367.45 -8.28 -43.98 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -7.36 Total: 9.10 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -1.33 Total: 9.99 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.27 Total: -60.60 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: 0.16 Total: -24.36 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.70 -8.28 -43.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752988176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.402 kcal (2) G-P(sol) polarization free energy of solvation -35.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds