Wall clock time and date at job start Tue Mar 31 2020 18:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99905 * 2 1 4 4 C 1.50702 * 109.47064 * 66.04358 * 3 2 1 5 5 O 1.21289 * 120.00053 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99620 * 180.02562 * 4 3 2 7 7 C 1.37101 * 119.99806 * 179.72817 * 6 4 3 8 8 H 1.08006 * 119.99836 * 359.97438 * 7 6 4 9 9 C 1.38949 * 120.00248 * 180.02562 * 7 6 4 10 10 N 1.31410 * 119.99851 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00026 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47604 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47114 * 120.00060 * 11 9 7 14 14 H 1.48502 * 109.47047 * 239.99268 * 11 9 7 15 15 C 1.46894 * 111.00070 * 236.04574 * 2 1 3 16 16 H 1.08994 * 109.49915 * 63.95432 * 15 2 1 17 17 C 1.53042 * 109.49848 * 303.88807 * 15 2 1 18 18 C 1.53033 * 109.53932 * 178.71647 * 17 15 2 19 19 C 1.53196 * 109.34073 * 61.31548 * 18 17 15 20 20 N 1.46926 * 108.77697 * 305.37977 * 19 18 17 21 21 C 1.34768 * 120.63133 * 233.62997 * 20 19 18 22 22 O 1.21611 * 120.00194 * 173.73089 * 21 20 19 23 23 C 1.47429 * 120.00369 * 353.73182 * 21 20 19 24 24 C 1.41293 * 126.40922 * 330.05221 * 23 21 20 25 25 N 1.30448 * 108.02103 * 179.85201 * 24 23 21 26 26 N 1.39937 * 108.89486 * 0.41360 * 25 24 23 27 27 H 0.97000 * 125.75440 * 179.73232 * 26 25 24 28 28 C 1.34255 * 108.49517 * 359.73202 * 26 25 24 29 29 C 1.46928 * 118.73342 * 53.60759 * 20 19 18 30 30 H 1.08994 * 109.47062 * 60.00431 * 1 2 3 31 31 H 1.09006 * 109.47018 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47127 * 299.99898 * 1 2 3 33 33 H 1.09003 * 109.47049 * 306.04636 * 3 2 1 34 34 H 1.08990 * 109.47591 * 186.04802 * 3 2 1 35 35 H 0.96996 * 120.00333 * 359.97438 * 6 4 3 36 36 H 0.97003 * 120.00235 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.46029 * 298.70300 * 17 15 2 38 38 H 1.08995 * 109.46157 * 58.66157 * 17 15 2 39 39 H 1.08999 * 109.47326 * 301.36252 * 18 17 15 40 40 H 1.09002 * 109.50157 * 181.27963 * 18 17 15 41 41 H 1.09002 * 109.58982 * 185.58976 * 19 18 17 42 42 H 1.09008 * 109.58470 * 65.16758 * 19 18 17 43 43 H 1.07994 * 125.99227 * 0.02562 * 24 23 21 44 44 H 1.07996 * 126.29467 * 179.97438 * 28 26 25 45 45 H 1.09008 * 109.58567 * 186.60666 * 29 20 19 46 46 H 1.08993 * 109.58889 * 66.18406 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 1.2984 5 8 1.0053 1.4453 2.1411 6 7 2.0179 3.3202 1.5232 7 6 1.6869 3.9368 2.7022 8 1 1.1204 3.4025 3.4506 9 6 2.0793 5.2495 2.9338 10 7 2.7681 5.8998 2.0230 11 14 1.6276 6.0898 4.5398 12 1 0.8555 5.1491 5.3907 13 1 2.8662 6.4980 5.2503 14 1 0.8019 7.2907 4.2549 15 6 1.9955 -0.7660 -1.1375 16 1 1.7047 -0.2803 -2.0689 17 6 1.4276 -2.1867 -1.1033 18 6 1.9502 -2.9759 -2.3058 19 6 3.4778 -3.0631 -2.2303 20 7 4.0241 -1.7039 -2.1171 21 6 4.9661 -1.2686 -2.9770 22 8 5.3279 -0.1080 -2.9461 23 6 5.5578 -2.1993 -3.9553 24 6 5.7322 -3.5915 -3.7891 25 7 6.2849 -4.0613 -4.8733 26 7 6.4962 -3.0062 -5.7679 27 1 6.8970 -3.0811 -6.6481 28 6 6.0508 -1.8728 -5.2027 29 6 3.5235 -0.8282 -1.0487 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.5611 1.9274 -0.8309 34 1 3.0796 1.3445 -0.1083 35 1 2.5233 3.8014 0.8495 36 1 3.0423 6.8161 2.1848 37 1 1.7389 -2.6802 -0.1826 38 1 0.3391 -2.1437 -1.1419 39 1 1.6598 -2.4699 -3.2265 40 1 1.5275 -3.9805 -2.2933 41 1 3.8619 -3.5372 -3.1335 42 1 3.7677 -3.6474 -1.3569 43 1 5.4538 -4.1665 -2.9184 44 1 6.0743 -0.8869 -5.6427 45 1 3.9377 0.1725 -1.1724 46 1 3.8172 -1.2301 -0.0791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752988176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:14 Heat of formation + Delta-G solvation = 1.163163 kcal Electronic energy + Delta-G solvation = -29089.055374 eV Core-core repulsion = 25014.944829 eV Total energy + Delta-G solvation = -4074.110544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.46301 -41.05996 -40.19621 -38.84511 -36.93475 -35.83565 -33.58252 -33.25164 -32.87283 -31.73516 -30.66865 -29.59349 -27.14830 -26.23491 -25.59679 -23.46171 -23.35895 -22.58520 -21.15860 -20.91708 -20.28488 -19.84153 -19.17160 -17.94362 -17.41134 -16.99550 -16.63461 -16.51924 -16.28355 -16.01916 -15.83514 -15.59045 -15.37796 -15.27806 -15.15154 -14.87959 -14.56348 -14.12783 -14.00850 -13.79513 -13.67787 -13.51784 -13.36542 -12.97091 -12.76242 -12.53270 -12.42340 -12.36479 -12.18949 -12.10215 -11.84441 -11.72318 -11.45291 -11.35258 -10.95530 -10.71766 -10.27834 -9.99817 -9.92191 -9.55625 -9.24764 -8.45358 -5.94407 0.58556 1.13870 1.37045 1.41689 1.56596 1.74647 1.98465 2.04959 2.28548 2.31868 2.77208 3.20657 3.40006 3.50389 3.76721 3.88595 3.92940 4.01470 4.07382 4.11673 4.23505 4.29580 4.33571 4.38238 4.45258 4.56967 4.58691 4.61785 4.66825 4.74292 4.84593 4.88056 5.02570 5.07395 5.10505 5.27456 5.31213 5.40774 5.43498 5.52062 5.87804 6.05823 6.19963 6.22001 6.42505 6.52651 6.60749 7.13476 7.19739 7.56495 8.11721 8.72578 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.002442 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.086727 B =11460.937182 C =12657.795675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.524 5.524 3 C 0.054 3.946 4 C 0.446 3.554 5 O -0.609 6.609 6 N -0.576 5.576 7 C -0.329 4.329 8 H 0.082 0.918 9 C -0.017 4.017 10 N -0.923 5.923 11 Si 0.995 3.005 12 H -0.271 1.271 13 H -0.272 1.272 14 H -0.271 1.271 15 C 0.078 3.922 16 H 0.035 0.965 17 C -0.112 4.112 18 C -0.124 4.124 19 C 0.090 3.910 20 N -0.601 5.601 21 C 0.590 3.410 22 O -0.593 6.593 23 C -0.315 4.315 24 C 0.086 3.914 25 N -0.315 5.315 26 N -0.449 5.449 27 H 0.460 0.540 28 C 0.141 3.859 29 C 0.121 3.879 30 H 0.022 0.978 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.394 0.606 36 H 0.277 0.723 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.216 0.784 44 H 0.209 0.791 45 H 0.068 0.932 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.182 -21.491 -18.711 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.249 5.249 3 C -0.078 4.078 4 C 0.233 3.767 5 O -0.495 6.495 6 N -0.214 5.214 7 C -0.459 4.459 8 H 0.100 0.900 9 C -0.216 4.216 10 N -0.565 5.565 11 Si 0.819 3.181 12 H -0.196 1.196 13 H -0.197 1.197 14 H -0.196 1.196 15 C -0.031 4.031 16 H 0.053 0.947 17 C -0.149 4.149 18 C -0.163 4.163 19 C -0.031 4.031 20 N -0.333 5.333 21 C 0.380 3.620 22 O -0.475 6.475 23 C -0.330 4.330 24 C -0.101 4.101 25 N -0.137 5.137 26 N -0.156 5.156 27 H 0.308 0.692 28 C -0.013 4.013 29 C -0.003 4.003 30 H 0.041 0.959 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.227 0.773 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.110 0.890 43 H 0.233 0.767 44 H 0.226 0.774 45 H 0.087 0.913 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.617 -22.416 -18.294 29.300 hybrid contribution -0.257 2.468 -0.165 2.487 sum 4.360 -19.948 -18.459 27.526 Atomic orbital electron populations 1.22491 0.86254 1.02983 1.00414 1.61566 1.09117 1.11428 1.42750 1.21778 1.01705 0.90105 0.94178 1.20598 0.83742 0.82221 0.90164 1.90447 1.44998 1.65233 1.48781 1.41973 1.49999 1.11566 1.17842 1.19714 1.34032 0.96322 0.95791 0.90038 1.26098 0.96320 0.96710 1.02492 1.69700 1.38174 1.12695 1.35894 0.84836 0.78224 0.77864 0.77191 1.19556 1.19689 1.19615 1.21978 0.94295 0.95987 0.90796 0.94670 1.21667 1.00990 0.92402 0.99888 1.21904 0.94774 1.02107 0.97482 1.22477 0.94318 0.81636 1.04675 1.47890 1.39127 1.15763 1.30504 1.17738 0.78302 0.86152 0.79760 1.90781 1.63897 1.20343 1.72461 1.20171 1.19269 0.94842 0.98710 1.24575 0.95544 0.92310 0.97663 1.77157 1.22802 1.11833 1.01877 1.46240 1.47501 1.04183 1.17664 0.69192 1.23340 0.91583 0.93589 0.92801 1.21490 0.93115 0.95293 0.90368 0.95911 0.88933 0.92326 0.92341 0.88229 0.77285 0.91366 0.90577 0.90614 0.92069 0.87265 0.87046 0.88966 0.76726 0.77397 0.91330 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 8.84 127.69 1.13 1.97 16 2 N -0.52 -17.48 4.37 -901.17 -3.94 -21.41 16 3 C 0.05 2.05 5.26 85.56 0.45 2.50 16 4 C 0.45 22.17 7.51 87.66 0.66 22.83 16 5 O -0.61 -34.06 13.89 -3.06 -0.04 -34.10 16 6 N -0.58 -31.04 5.29 -306.98 -1.62 -32.66 16 7 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 8 H 0.08 5.03 7.16 -2.91 -0.02 5.00 16 9 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 10 N -0.92 -51.75 13.05 21.66 0.28 -51.47 16 11 Si 1.00 44.07 29.55 68.60 2.03 46.09 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 15 C 0.08 2.01 2.09 44.99 0.09 2.10 16 16 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 17 C -0.11 -2.04 4.86 30.62 0.15 -1.89 16 18 C -0.12 -1.51 6.08 30.67 0.19 -1.32 16 19 C 0.09 1.13 5.22 86.36 0.45 1.58 16 20 N -0.60 -12.83 2.97 -822.76 -2.45 -15.28 16 21 C 0.59 14.69 7.62 86.67 0.66 15.35 16 22 O -0.59 -20.20 16.44 -4.07 -0.07 -20.26 16 23 C -0.31 -5.58 5.52 -20.15 -0.11 -5.69 16 24 C 0.09 1.18 9.58 85.65 0.82 2.00 16 25 N -0.32 -4.57 12.63 -56.28 -0.71 -5.28 16 26 N -0.45 -4.42 7.29 -56.32 -0.41 -4.83 16 27 H 0.46 1.24 8.96 -213.43 -1.91 -0.67 16 28 C 0.14 1.80 11.94 84.28 1.01 2.81 16 29 C 0.12 3.22 5.34 86.36 0.46 3.68 16 30 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 2.38 5.98 -2.38 -0.01 2.37 16 32 H 0.06 2.37 5.88 -2.39 -0.01 2.35 16 33 H 0.06 2.11 8.12 -2.39 -0.02 2.09 16 34 H 0.10 3.66 5.95 -2.39 -0.01 3.64 16 35 H 0.39 20.54 7.90 -92.71 -0.73 19.81 16 36 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 1.32 6.19 -2.39 -0.01 1.31 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.11 1.05 4.22 -2.39 -0.01 1.04 16 42 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.22 1.74 6.51 -2.91 -0.02 1.72 16 44 H 0.21 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.07 2.22 5.37 -2.38 -0.01 2.20 16 46 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -79.97 367.45 -1.28 -81.26 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: -1.59 Total: 30.89 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 7.23 Total: 27.05 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -8.84 Total: -130.93 kcal Atomic # 8 Polarization: -54.26 SS G_CDS: -0.11 Total: -54.36 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -79.97 -1.28 -81.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752988176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.420 kcal (2) G-P(sol) polarization free energy of solvation -79.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds