Wall clock time and date at job start Tue Mar 31 2020 18:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38352 * 119.92792 * 2 1 4 4 C 1.38565 * 120.22235 * 179.70150 * 3 2 1 5 5 F 1.35096 * 119.96490 * 180.32193 * 4 3 2 6 6 C 1.38226 * 120.06564 * 0.59934 * 4 3 2 7 7 C 1.50695 * 120.07345 * 179.70008 * 6 4 3 8 8 N 1.46901 * 109.47280 * 94.28649 * 7 6 4 9 9 C 1.46899 * 111.00331 * 167.21342 * 8 7 6 10 10 C 1.50699 * 109.47499 * 184.78156 * 9 8 7 11 11 H 1.08001 * 119.99577 * 6.44210 * 10 9 8 12 12 C 1.37878 * 120.00267 * 186.43993 * 10 9 8 13 13 N 1.31515 * 120.00092 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99742 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.46482 * 90.00277 * 14 12 10 16 16 H 1.48502 * 109.46869 * 210.00061 * 14 12 10 17 17 H 1.48496 * 109.47256 * 330.00442 * 14 12 10 18 18 C 1.46897 * 110.99919 * 291.16271 * 8 7 6 19 19 C 1.54262 * 110.03814 * 267.14362 * 18 8 7 20 20 C 1.54958 * 104.16599 * 217.13680 * 19 18 8 21 21 C 1.54890 * 102.77521 * 37.88411 * 20 19 18 22 22 C 1.53876 * 110.03234 * 149.92330 * 18 8 7 23 23 C 1.39347 * 119.84826 * 359.42243 * 6 4 3 24 Xx 1.57003 * 120.10541 * 180.25156 * 23 6 4 25 24 O 1.42001 * 119.99921 * 47.00398 * 24 23 6 26 25 O 1.41995 * 120.00083 * 226.99885 * 24 23 6 27 26 C 1.37963 * 119.92207 * 180.02562 * 2 1 3 28 27 H 1.09002 * 109.47139 * 269.97472 * 1 2 3 29 28 H 1.09000 * 109.47096 * 29.97443 * 1 2 3 30 29 H 1.09000 * 109.47295 * 149.97882 * 1 2 3 31 30 H 1.08000 * 119.88623 * 359.97438 * 3 2 1 32 31 H 1.09005 * 109.47233 * 214.28522 * 7 6 4 33 32 H 1.08994 * 109.47451 * 334.28551 * 7 6 4 34 33 H 1.09001 * 109.46948 * 304.77953 * 9 8 7 35 34 H 1.08995 * 109.47555 * 64.77601 * 9 8 7 36 35 H 0.96992 * 120.00130 * 180.02562 * 13 12 10 37 36 H 1.09004 * 110.01539 * 28.53684 * 18 8 7 38 37 H 1.09004 * 110.48604 * 335.78529 * 19 18 8 39 38 H 1.09004 * 110.48439 * 98.42500 * 19 18 8 40 39 H 1.09002 * 110.71949 * 279.57787 * 20 19 18 41 40 H 1.08999 * 110.92450 * 156.29134 * 20 19 18 42 41 H 1.09005 * 110.48585 * 203.40659 * 21 20 19 43 42 H 1.09004 * 110.59708 * 80.82412 * 21 20 19 44 43 H 1.08995 * 110.03652 * 238.56829 * 22 18 8 45 44 H 1.09001 * 110.03298 * 0.02562 * 22 18 8 46 45 H 0.96705 * 114.00100 * 5.32980 * 25 24 23 47 46 H 0.96699 * 113.99885 * 0.02562 * 26 24 23 48 47 H 1.08004 * 120.04270 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1990 0.0000 4 6 3.5828 1.2062 0.0062 5 9 4.2516 2.3800 0.0128 6 6 4.2815 0.0135 0.0000 7 6 5.7885 0.0211 -0.0001 8 7 6.2788 -0.0872 1.3805 9 6 7.7167 -0.3865 1.4066 10 6 8.1585 -0.6058 2.8306 11 1 7.4269 -0.6337 3.6246 12 6 9.4964 -0.7709 3.1197 13 7 9.8819 -0.9628 4.3624 14 14 10.7615 -0.7234 1.7461 15 1 11.2304 0.6724 1.5532 16 1 11.9145 -1.5879 2.1050 17 1 10.1454 -1.2169 0.4883 18 6 5.9813 1.1333 2.1419 19 6 7.1755 2.1070 2.0675 20 6 7.2274 2.7519 3.4755 21 6 6.8650 1.5690 4.4075 22 6 5.7835 0.7916 3.6292 23 6 3.5892 -1.1958 -0.0004 24 8 5.4588 -2.7482 0.8973 25 8 4.0070 -3.5884 -0.9013 26 6 2.1952 -1.1957 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6542 2.1326 -0.0004 31 1 6.1561 -0.8232 -0.5834 32 1 6.1471 0.9510 -0.4411 33 1 7.9111 -1.2865 0.8232 34 1 8.2698 0.4498 0.9793 35 1 10.8231 -1.0786 4.5658 36 1 5.0850 1.6109 1.7462 37 1 8.0982 1.5640 1.8625 38 1 7.0014 2.8666 1.3053 39 1 6.4908 3.5508 3.5612 40 1 8.2275 3.1251 3.6961 41 1 6.4648 1.9367 5.3525 42 1 7.7364 0.9382 4.5830 43 1 4.7916 1.1041 3.9554 44 1 5.9086 -0.2798 3.7860 45 1 5.5841 -2.0228 1.5245 46 1 3.2603 -3.3639 -1.4733 47 1 1.6546 -2.1307 -0.0005 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250447041.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:23 Heat of formation + Delta-G solvation = 95.294106 kcal Electronic energy + Delta-G solvation = -29520.261032 eV Core-core repulsion = 25512.590000 eV Total energy + Delta-G solvation = -4007.671032 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.176 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -48.67504 -39.78354 -38.31564 -35.47977 -35.09246 -32.52474 -30.17806 -29.61732 -28.99851 -28.71229 -28.67848 -28.08467 -26.56442 -24.09423 -22.66864 -21.69817 -20.52178 -20.28257 -19.31040 -18.88968 -16.51114 -16.36360 -16.20599 -16.11220 -15.58845 -15.21203 -15.13109 -14.57173 -14.38510 -13.77382 -13.45400 -13.32031 -13.13827 -13.00923 -12.82971 -12.60772 -12.28056 -12.19861 -11.80930 -11.65738 -11.40202 -11.34728 -11.29924 -11.14823 -11.12864 -11.04126 -10.92087 -10.80071 -10.79499 -10.57858 -10.50345 -10.22688 -10.06546 -8.75650 -8.18647 -8.16120 -7.79280 -7.28133 -7.01026 -6.79265 -5.68121 -3.47328 0.45385 1.57196 1.88114 2.09473 2.12551 2.34116 2.82167 2.99902 3.95687 4.38751 4.60183 4.78495 4.81998 4.85639 5.09106 5.12204 5.18656 5.35251 5.44436 5.49218 5.60588 5.65034 5.66698 5.69603 5.74413 5.75692 5.82730 5.85218 5.88722 5.92885 6.00010 6.03770 6.08057 6.16238 6.18960 6.27524 6.38057 6.42808 6.46484 6.49600 6.55482 6.57738 6.69537 6.83783 7.25377 7.39201 7.45824 7.55260 8.07202 9.97442 10.27602 Molecular weight = 324.18amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.004864 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.214835 B = 5754.875260 C = 6785.798885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.050 4.050 3 C -0.197 4.197 4 C 0.111 3.889 5 F -0.141 7.141 6 C -0.145 4.145 7 C 0.112 3.888 8 N -0.502 5.502 9 C 0.063 3.937 10 C -0.077 4.077 11 H 0.154 0.846 12 C -0.066 4.066 13 N -0.620 5.620 14 Si 0.922 3.078 15 H -0.246 1.246 16 H -0.252 1.252 17 H -0.232 1.232 18 C 0.068 3.932 19 C -0.170 4.170 20 C -0.116 4.116 21 C -0.133 4.133 22 C -0.121 4.121 23 C 0.178 3.822 24 O -0.743 6.743 25 O -0.823 6.823 26 C -0.150 4.150 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.128 0.872 31 H 0.105 0.895 32 H 0.035 0.965 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.326 0.674 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.085 0.915 45 H 0.285 0.715 46 H 0.244 0.756 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.732 15.436 4.614 16.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.050 4.050 3 C -0.216 4.216 4 C 0.091 3.909 5 F -0.120 7.120 6 C -0.147 4.147 7 C -0.015 4.015 8 N -0.225 5.225 9 C -0.064 4.064 10 C -0.095 4.095 11 H 0.171 0.829 12 C -0.277 4.277 13 N -0.268 5.268 14 Si 0.740 3.260 15 H -0.170 1.170 16 H -0.175 1.175 17 H -0.154 1.154 18 C -0.040 4.040 19 C -0.208 4.208 20 C -0.154 4.154 21 C -0.171 4.171 22 C -0.158 4.158 23 C 0.153 3.847 24 O -0.558 6.558 25 O -0.638 6.638 26 C -0.169 4.169 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.146 0.854 31 H 0.123 0.877 32 H 0.053 0.947 33 H 0.134 0.866 34 H 0.081 0.919 35 H 0.139 0.861 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.116 0.884 46 H 0.069 0.931 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.189 14.105 4.864 15.257 hybrid contribution 0.725 1.209 -0.595 1.530 sum 3.914 15.314 4.270 16.373 Atomic orbital electron populations 1.20759 0.90508 1.02779 1.02395 1.19648 0.95775 0.91433 0.98188 1.20713 0.91751 0.98816 1.10338 1.17418 0.89759 0.79883 1.03849 1.91410 1.80862 1.45723 1.94012 1.19826 0.97236 0.89412 1.08253 1.20812 0.90107 1.01261 0.89282 1.62049 1.13201 1.33893 1.13359 1.21598 0.89383 1.00802 0.94585 1.25743 0.95319 0.90193 0.98268 0.82907 1.26486 1.01418 0.99791 1.00035 1.69855 1.23483 1.13483 1.20027 0.85785 0.78570 0.81545 0.80108 1.16976 1.17520 1.15395 1.22605 0.98023 0.88652 0.94737 1.23293 1.00535 0.99230 0.97741 1.22357 1.00676 0.97565 0.94790 1.22589 0.99545 0.97138 0.97820 1.22393 0.98351 1.01543 0.93543 1.31788 0.87156 0.83339 0.82450 1.94206 1.67244 1.38856 1.55535 1.94398 1.47754 1.59280 1.62320 1.21305 0.92831 0.97800 1.04922 0.91024 0.91611 0.91104 0.85397 0.87692 0.94706 0.86575 0.91851 0.86079 0.89458 0.89972 0.91884 0.91939 0.92171 0.92161 0.90296 0.92023 0.89679 0.88380 0.93105 0.84602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 36.00 0.36 -0.93 16 2 C -0.05 -0.81 5.87 -104.68 -0.61 -1.43 16 3 C -0.20 -3.14 9.67 -39.42 -0.38 -3.52 16 4 C 0.11 1.97 6.19 -39.46 -0.24 1.73 16 5 F -0.14 -2.32 14.79 2.25 0.03 -2.29 16 6 C -0.15 -3.04 4.99 -104.22 -0.52 -3.56 16 7 C 0.11 2.22 4.04 -4.98 -0.02 2.20 16 8 N -0.50 -9.14 1.98 -228.19 -0.45 -9.60 16 9 C 0.06 1.03 3.05 -4.98 -0.02 1.01 16 10 C -0.08 -1.18 6.27 -34.44 -0.22 -1.40 16 11 H 0.15 2.46 3.73 -52.49 -0.20 2.27 16 12 C -0.07 -0.92 5.47 -17.82 -0.10 -1.01 16 13 N -0.62 -8.62 13.96 55.43 0.77 -7.85 16 14 Si 0.92 11.25 27.35 -169.99 -4.65 6.60 16 15 H -0.25 -2.83 7.11 56.52 0.40 -2.43 16 16 H -0.25 -3.04 7.11 56.52 0.40 -2.64 16 17 H -0.23 -3.10 6.73 56.52 0.38 -2.72 16 18 C 0.07 1.06 2.71 -66.60 -0.18 0.88 16 19 C -0.17 -2.23 5.71 -25.04 -0.14 -2.37 16 20 C -0.12 -1.36 6.91 -24.70 -0.17 -1.53 16 21 C -0.13 -1.67 6.20 -25.07 -0.16 -1.82 16 22 C -0.12 -1.77 5.65 -25.61 -0.14 -1.91 16 23 C 0.18 4.39 8.91 -38.73 -0.35 4.04 16 24 O -0.74 -25.46 16.73 -57.73 -0.97 -26.43 16 25 O -0.82 -30.60 17.89 -57.73 -1.03 -31.64 16 26 C -0.15 -3.11 9.53 -39.25 -0.37 -3.48 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 29 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 30 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.10 2.43 7.42 -51.93 -0.39 2.04 16 32 H 0.03 0.60 7.47 -51.93 -0.39 0.22 16 33 H 0.12 2.16 7.51 -51.93 -0.39 1.77 16 34 H 0.06 0.89 4.82 -51.93 -0.25 0.64 16 35 H 0.33 3.78 8.31 -40.82 -0.34 3.44 16 36 H 0.09 1.44 4.31 -51.93 -0.22 1.21 16 37 H 0.08 1.07 4.07 -51.93 -0.21 0.85 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.04 6.04 -51.93 -0.31 0.73 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.08 1.39 5.89 -51.93 -0.31 1.09 16 45 H 0.28 8.42 5.70 45.56 0.26 8.68 16 46 H 0.24 7.98 8.84 45.56 0.40 8.39 16 47 H 0.14 2.81 8.06 -52.48 -0.42 2.39 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -39.65 370.07 -9.36 -49.00 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -5.38 Total: 29.72 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -3.26 Total: -13.10 kcal Atomic # 7 Polarization: -17.77 SS G_CDS: 0.32 Total: -17.44 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: -2.00 Total: -58.06 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.03 Total: -2.29 kcal Atomic # 14 Polarization: 11.25 SS G_CDS: -4.65 Total: 6.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.65 -9.36 -49.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250447041.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.297 kcal (2) G-P(sol) polarization free energy of solvation -39.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds