Wall clock time and date at job start Tue Mar 31 2020 18:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38352 * 119.92792 * 2 1 4 4 C 1.38565 * 120.22235 * 179.70150 * 3 2 1 5 5 F 1.35096 * 119.96490 * 180.32193 * 4 3 2 6 6 C 1.38226 * 120.06564 * 0.59934 * 4 3 2 7 7 C 1.50695 * 120.07345 * 179.70008 * 6 4 3 8 8 N 1.46901 * 109.47280 * 94.28649 * 7 6 4 9 9 C 1.46899 * 111.00331 * 167.21342 * 8 7 6 10 10 C 1.50699 * 109.47499 * 184.78156 * 9 8 7 11 11 H 1.08001 * 119.99577 * 6.44210 * 10 9 8 12 12 C 1.37878 * 120.00267 * 186.43993 * 10 9 8 13 13 N 1.31515 * 120.00092 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99742 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.46482 * 90.00277 * 14 12 10 16 16 H 1.48502 * 109.46869 * 210.00061 * 14 12 10 17 17 H 1.48496 * 109.47256 * 330.00442 * 14 12 10 18 18 C 1.46897 * 110.99919 * 291.16271 * 8 7 6 19 19 C 1.54262 * 110.03814 * 267.14362 * 18 8 7 20 20 C 1.54958 * 104.16599 * 217.13680 * 19 18 8 21 21 C 1.54890 * 102.77521 * 37.88411 * 20 19 18 22 22 C 1.53876 * 110.03234 * 149.92330 * 18 8 7 23 23 C 1.39347 * 119.84826 * 359.42243 * 6 4 3 24 Xx 1.57003 * 120.10541 * 180.25156 * 23 6 4 25 24 O 1.42001 * 119.99921 * 47.00398 * 24 23 6 26 25 O 1.41995 * 120.00083 * 226.99885 * 24 23 6 27 26 C 1.37963 * 119.92207 * 180.02562 * 2 1 3 28 27 H 1.09002 * 109.47139 * 269.97472 * 1 2 3 29 28 H 1.09000 * 109.47096 * 29.97443 * 1 2 3 30 29 H 1.09000 * 109.47295 * 149.97882 * 1 2 3 31 30 H 1.08000 * 119.88623 * 359.97438 * 3 2 1 32 31 H 1.09005 * 109.47233 * 214.28522 * 7 6 4 33 32 H 1.08994 * 109.47451 * 334.28551 * 7 6 4 34 33 H 1.09001 * 109.46948 * 304.77953 * 9 8 7 35 34 H 1.08995 * 109.47555 * 64.77601 * 9 8 7 36 35 H 0.96992 * 120.00130 * 180.02562 * 13 12 10 37 36 H 1.09004 * 110.01539 * 28.53684 * 18 8 7 38 37 H 1.09004 * 110.48604 * 335.78529 * 19 18 8 39 38 H 1.09004 * 110.48439 * 98.42500 * 19 18 8 40 39 H 1.09002 * 110.71949 * 279.57787 * 20 19 18 41 40 H 1.08999 * 110.92450 * 156.29134 * 20 19 18 42 41 H 1.09005 * 110.48585 * 203.40659 * 21 20 19 43 42 H 1.09004 * 110.59708 * 80.82412 * 21 20 19 44 43 H 1.08995 * 110.03652 * 238.56829 * 22 18 8 45 44 H 1.09001 * 110.03298 * 0.02562 * 22 18 8 46 45 H 0.96705 * 114.00100 * 5.32980 * 25 24 23 47 46 H 0.96699 * 113.99885 * 0.02562 * 26 24 23 48 47 H 1.08004 * 120.04270 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1990 0.0000 4 6 3.5828 1.2062 0.0062 5 9 4.2516 2.3800 0.0128 6 6 4.2815 0.0135 0.0000 7 6 5.7885 0.0211 -0.0001 8 7 6.2788 -0.0872 1.3805 9 6 7.7167 -0.3865 1.4066 10 6 8.1585 -0.6058 2.8306 11 1 7.4269 -0.6337 3.6246 12 6 9.4964 -0.7709 3.1197 13 7 9.8819 -0.9628 4.3624 14 14 10.7615 -0.7234 1.7461 15 1 11.2304 0.6724 1.5532 16 1 11.9145 -1.5879 2.1050 17 1 10.1454 -1.2169 0.4883 18 6 5.9813 1.1333 2.1419 19 6 7.1755 2.1070 2.0675 20 6 7.2274 2.7519 3.4755 21 6 6.8650 1.5690 4.4075 22 6 5.7835 0.7916 3.6292 23 6 3.5892 -1.1958 -0.0004 24 8 5.4588 -2.7482 0.8973 25 8 4.0070 -3.5884 -0.9013 26 6 2.1952 -1.1957 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6542 2.1326 -0.0004 31 1 6.1561 -0.8232 -0.5834 32 1 6.1471 0.9510 -0.4411 33 1 7.9111 -1.2865 0.8232 34 1 8.2698 0.4498 0.9793 35 1 10.8231 -1.0786 4.5658 36 1 5.0850 1.6109 1.7462 37 1 8.0982 1.5640 1.8625 38 1 7.0014 2.8666 1.3053 39 1 6.4908 3.5508 3.5612 40 1 8.2275 3.1251 3.6961 41 1 6.4648 1.9367 5.3525 42 1 7.7364 0.9382 4.5830 43 1 4.7916 1.1041 3.9554 44 1 5.9086 -0.2798 3.7860 45 1 5.5841 -2.0228 1.5245 46 1 3.2603 -3.3639 -1.4733 47 1 1.6546 -2.1307 -0.0005 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250447041.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:22 Heat of formation + Delta-G solvation = 59.482301 kcal Electronic energy + Delta-G solvation = -29521.813949 eV Core-core repulsion = 25512.590000 eV Total energy + Delta-G solvation = -4009.223948 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.176 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.24563 -41.16577 -40.11294 -36.63531 -36.46864 -34.07308 -31.63268 -31.51191 -31.19022 -30.92205 -29.78974 -29.45105 -27.83763 -25.53372 -24.05767 -23.57578 -21.96200 -21.49691 -20.53963 -20.19973 -17.88486 -17.79853 -17.69922 -17.68516 -16.99483 -16.74741 -16.47918 -15.74390 -15.65106 -15.00366 -14.85624 -14.56021 -14.48341 -14.33482 -14.10767 -13.87017 -13.79227 -13.60732 -13.51429 -13.35802 -13.00486 -12.90164 -12.76453 -12.57624 -12.49685 -12.41533 -12.24909 -11.95566 -11.86811 -11.83508 -11.66260 -11.29163 -11.22098 -10.13582 -9.91154 -9.88721 -9.42902 -9.25234 -9.23010 -9.16834 -8.39854 -4.70027 -1.69741 -0.23915 -0.10453 1.03716 1.06374 1.32234 1.75546 1.93828 2.16460 2.79807 2.88736 3.32313 3.48845 3.59788 3.63483 3.74203 3.76017 3.94211 3.95807 4.00369 4.14909 4.25881 4.35910 4.46101 4.50942 4.56465 4.60160 4.66329 4.68799 4.72079 4.74517 4.78066 4.86372 4.90634 4.91539 5.02508 5.15412 5.19429 5.22960 5.25002 5.28246 5.30916 5.31733 5.44239 5.55641 5.57829 5.99221 6.20785 7.00079 7.81934 8.26218 Molecular weight = 324.18amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.004864 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.214835 B = 5754.875260 C = 6785.798885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.007 4.007 3 C -0.142 4.142 4 C 0.143 3.857 5 F -0.111 7.111 6 C -0.155 4.155 7 C 0.114 3.886 8 N -0.527 5.527 9 C 0.071 3.929 10 C -0.087 4.087 11 H 0.143 0.857 12 C -0.073 4.073 13 N -0.624 5.624 14 Si 0.955 3.045 15 H -0.216 1.216 16 H -0.244 1.244 17 H -0.265 1.265 18 C 0.067 3.933 19 C -0.167 4.167 20 C -0.106 4.106 21 C -0.127 4.127 22 C -0.121 4.121 23 C 0.252 3.748 24 O -0.906 6.906 25 O -1.028 7.028 26 C -0.155 4.155 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.204 0.796 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.341 0.659 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.278 0.722 46 H 0.220 0.780 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.760 24.888 5.806 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.007 4.007 3 C -0.160 4.160 4 C 0.122 3.878 5 F -0.089 7.089 6 C -0.157 4.157 7 C -0.013 4.013 8 N -0.251 5.251 9 C -0.056 4.056 10 C -0.105 4.105 11 H 0.160 0.840 12 C -0.283 4.283 13 N -0.274 5.274 14 Si 0.771 3.229 15 H -0.138 1.138 16 H -0.167 1.167 17 H -0.189 1.189 18 C -0.040 4.040 19 C -0.205 4.205 20 C -0.144 4.144 21 C -0.164 4.164 22 C -0.159 4.159 23 C 0.232 3.768 24 O -0.721 6.721 25 O -0.847 6.847 26 C -0.174 4.174 27 H 0.118 0.882 28 H 0.131 0.869 29 H 0.095 0.905 30 H 0.221 0.779 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.156 0.844 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.109 0.891 46 H 0.045 0.955 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.298 23.626 6.108 24.405 hybrid contribution 1.347 -0.919 -0.835 1.832 sum 1.048 22.707 5.274 23.335 Atomic orbital electron populations 1.21024 0.84859 1.05560 1.05011 1.20067 0.98652 0.87733 0.94294 1.21610 0.90246 1.01267 1.02879 1.16938 0.90095 0.78253 1.02466 1.91518 1.80755 1.43112 1.93550 1.19986 0.98776 0.88814 1.08075 1.20649 0.89072 1.00908 0.90706 1.61844 1.14660 1.36326 1.12226 1.21459 0.88883 1.00118 0.95101 1.25578 0.96061 0.91696 0.97196 0.83994 1.26770 1.01406 0.99117 1.01056 1.69807 1.24878 1.12295 1.20378 0.85368 0.77274 0.83056 0.77189 1.13796 1.16729 1.18938 1.22716 0.99138 0.87704 0.94480 1.23266 0.99000 0.98760 0.99482 1.22333 1.02083 0.97094 0.92852 1.22521 0.98278 0.97148 0.98502 1.22380 0.99795 1.00114 0.93644 1.29030 0.84748 0.66631 0.96365 1.94361 1.76531 1.42896 1.58356 1.94604 1.46334 1.78604 1.65140 1.21589 0.89336 1.01420 1.05032 0.88166 0.86924 0.90544 0.77945 0.93176 0.90590 0.90977 0.88913 0.84441 0.89540 0.90343 0.90357 0.90260 0.90700 0.90574 0.91498 0.91078 0.92860 0.89105 0.95509 0.84156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.24 0.71 -0.75 16 2 C -0.01 -0.16 5.87 -19.90 -0.12 -0.28 16 3 C -0.14 -2.90 9.67 22.38 0.22 -2.68 16 4 C 0.14 3.97 6.19 22.35 0.14 4.11 16 5 F -0.11 -2.62 14.79 44.97 0.67 -1.95 16 6 C -0.15 -6.24 4.99 -19.60 -0.10 -6.34 16 7 C 0.11 4.72 4.04 85.56 0.35 5.07 16 8 N -0.53 -20.48 1.98 -875.84 -1.73 -22.21 16 9 C 0.07 2.57 3.05 85.56 0.26 2.84 16 10 C -0.09 -2.92 6.27 25.60 0.16 -2.75 16 11 H 0.14 5.05 3.73 -2.91 -0.01 5.04 16 12 C -0.07 -2.13 5.47 84.65 0.46 -1.66 16 13 N -0.62 -17.64 13.96 21.45 0.30 -17.34 16 14 Si 0.95 23.67 27.35 68.60 1.88 25.54 16 15 H -0.22 -4.37 7.11 99.48 0.71 -3.66 16 16 H -0.24 -5.79 7.11 99.48 0.71 -5.08 16 17 H -0.27 -8.06 6.73 99.48 0.67 -7.39 16 18 C 0.07 1.96 2.71 45.64 0.12 2.08 16 19 C -0.17 -3.81 5.71 31.69 0.18 -3.62 16 20 C -0.11 -2.01 6.91 31.91 0.22 -1.79 16 21 C -0.13 -2.88 6.20 31.67 0.20 -2.69 16 22 C -0.12 -3.45 5.65 31.32 0.18 -3.27 16 23 C 0.25 12.99 8.91 22.82 0.20 13.19 16 24 O -0.91 -73.90 16.73 -127.47 -2.13 -76.03 16 25 O -1.03 -91.73 17.89 -127.47 -2.28 -94.01 16 26 C -0.16 -6.09 9.53 22.49 0.21 -5.88 16 27 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.11 0.77 8.08 -2.39 -0.02 0.75 16 29 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 30 H 0.20 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.05 2.66 7.42 -2.38 -0.02 2.64 16 32 H 0.08 2.49 7.47 -2.39 -0.02 2.48 16 33 H 0.07 3.28 7.51 -2.39 -0.02 3.26 16 34 H 0.09 2.70 4.82 -2.39 -0.01 2.69 16 35 H 0.34 7.77 8.31 -92.71 -0.77 7.00 16 36 H 0.09 2.42 4.31 -2.38 -0.01 2.41 16 37 H 0.08 1.87 4.07 -2.39 -0.01 1.86 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.07 1.71 6.04 -2.38 -0.01 1.69 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 1.88 5.89 -2.39 -0.01 1.86 16 45 H 0.28 19.43 5.70 -74.05 -0.42 19.01 16 46 H 0.22 17.53 8.84 -74.06 -0.65 16.87 16 47 H 0.14 5.82 8.06 -2.91 -0.02 5.80 16 Total: -1.00 -121.76 370.07 0.00 -121.76 By element: Atomic # 1 Polarization: 68.76 SS G_CDS: -0.09 Total: 68.67 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 3.40 Total: -4.43 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: -1.43 Total: -39.55 kcal Atomic # 8 Polarization: -165.63 SS G_CDS: -4.41 Total: -170.04 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.67 Total: -1.95 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: 1.88 Total: 25.54 kcal Total: -121.76 0.00 -121.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250447041.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.240 kcal (2) G-P(sol) polarization free energy of solvation -121.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -121.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds