Wall clock time and date at job start Tue Mar 31 2020 19:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99712 * 2 1 4 4 H 1.09001 * 110.37274 * 30.72512 * 3 2 1 5 5 C 1.54381 * 110.32301 * 268.54278 * 3 2 1 6 6 N 1.48566 * 104.59577 * 217.25540 * 5 3 2 7 7 C 1.46903 * 110.99995 * 159.03943 * 6 5 3 8 8 C 1.50694 * 109.46983 * 169.99855 * 7 6 5 9 9 C 1.38295 * 119.97322 * 90.00019 * 8 7 6 10 10 C 1.38242 * 120.11401 * 179.74918 * 9 8 7 11 11 C 1.38169 * 120.05494 * 359.94904 * 10 9 8 12 12 C 1.38711 * 119.94094 * 0.03192 * 11 10 9 13 13 O 1.35906 * 120.04992 * 180.02562 * 12 11 10 14 14 C 1.42896 * 117.00447 * 0.02562 * 13 12 11 15 15 C 1.52990 * 109.47374 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47321 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00020 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00142 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00353 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00136 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47107 * 89.99942 * 20 18 16 22 22 H 1.48503 * 109.47324 * 210.00094 * 20 18 16 23 23 H 1.48503 * 109.47171 * 330.00274 * 20 18 16 24 24 C 1.38122 * 119.97595 * 269.72490 * 8 7 6 25 25 C 1.48563 * 104.22072 * 39.48399 * 6 5 3 26 26 C 1.54263 * 110.32286 * 152.90963 * 3 2 1 27 27 H 1.09000 * 110.32470 * 237.79183 * 26 3 2 28 28 O 1.42900 * 110.32366 * 359.89442 * 26 3 2 29 29 C 1.42894 * 114.00130 * 210.00309 * 28 26 3 30 30 H 1.08996 * 109.47352 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47536 * 300.00562 * 1 2 3 32 32 H 1.09003 * 109.47075 * 59.99994 * 1 2 3 33 33 H 1.08997 * 110.41054 * 98.47306 * 5 3 2 34 34 H 1.09002 * 110.41352 * 336.03115 * 5 3 2 35 35 H 1.08998 * 109.47310 * 49.99861 * 7 6 5 36 36 H 1.08997 * 109.47090 * 289.99870 * 7 6 5 37 37 H 1.07997 * 119.93892 * 359.72353 * 9 8 7 38 38 H 1.07998 * 119.97158 * 179.97438 * 10 9 8 39 39 H 1.07999 * 120.02733 * 180.02562 * 11 10 9 40 40 H 1.09010 * 109.46531 * 300.00160 * 14 13 12 41 41 H 1.09000 * 109.47346 * 59.99593 * 14 13 12 42 42 H 1.09010 * 109.47256 * 299.99512 * 15 14 13 43 43 H 1.09000 * 109.47825 * 59.99713 * 15 14 13 44 44 H 0.96996 * 120.00617 * 180.02562 * 19 18 16 45 45 H 1.08002 * 120.02294 * 0.25466 * 24 8 7 46 46 H 1.08995 * 110.41107 * 79.29638 * 25 6 5 47 47 H 1.09002 * 110.40543 * 201.74131 * 25 6 5 48 48 H 1.09002 * 109.47523 * 59.99784 * 29 28 26 49 49 H 1.09008 * 109.47375 * 180.02562 * 29 28 26 50 50 H 1.09001 * 109.47061 * 299.99804 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3620 2.0094 0.5221 5 6 2.2618 1.7804 -1.4472 6 7 3.5449 2.5261 -1.3788 7 6 4.1731 2.6158 -2.7037 8 6 5.3322 3.5771 -2.6460 9 6 6.5976 3.1156 -2.3326 10 6 7.6639 3.9940 -2.2839 11 6 7.4679 5.3357 -2.5495 12 6 6.1997 5.8010 -2.8645 13 8 6.0044 7.1202 -3.1266 14 6 7.1503 7.9714 -3.0603 15 6 6.7371 9.4088 -3.3823 16 6 7.9455 10.3067 -3.3118 17 1 8.9114 9.8934 -3.0619 18 6 7.8178 11.6556 -3.5664 19 7 8.8724 12.4391 -3.5054 20 14 6.1472 12.3704 -3.9994 21 1 5.4520 12.7921 -2.7568 22 1 6.3271 13.5457 -4.8892 23 1 5.3342 11.3417 -4.6966 24 6 5.1310 4.9175 -2.9117 25 6 4.3815 1.7281 -0.4458 26 6 3.4046 1.2712 0.6588 27 1 3.4409 1.9582 1.5043 28 8 3.7197 -0.0559 1.0849 29 6 4.5738 -0.1116 2.2291 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.4572 2.4376 -1.7770 34 1 2.3544 0.9255 -2.1172 35 1 3.4417 2.9717 -3.4292 36 1 4.5322 1.6312 -3.0029 37 1 6.7529 2.0672 -2.1251 38 1 8.6511 3.6312 -2.0386 39 1 8.3013 6.0215 -2.5118 40 1 7.5747 7.9318 -2.0570 41 1 7.8942 7.6362 -3.7830 42 1 6.3124 9.4488 -4.3855 43 1 5.9934 9.7439 -2.6593 44 1 8.7825 13.3882 -3.6842 45 1 4.1426 5.2774 -3.1567 46 1 4.8057 0.8652 -0.9590 47 1 5.1729 2.3462 -0.0216 48 1 4.0907 0.3893 3.0680 49 1 4.7660 -1.1527 2.4888 50 1 5.5169 0.3860 2.0031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488534310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:38 Heat of formation + Delta-G solvation = -91.954711 kcal Electronic energy + Delta-G solvation = -28432.527138 eV Core-core repulsion = 24425.626292 eV Total energy + Delta-G solvation = -4006.900846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.34830 -39.69136 -37.75481 -37.46585 -36.52318 -33.36811 -32.50569 -31.11564 -29.99011 -29.36162 -28.67223 -27.02743 -26.72907 -25.55825 -24.77888 -22.56927 -21.83982 -21.31349 -21.08943 -20.10737 -17.91271 -17.51981 -17.02267 -16.64443 -15.96984 -15.89802 -15.72653 -15.49709 -15.45191 -15.36184 -14.90436 -14.49308 -14.46180 -14.20810 -14.11956 -13.69746 -13.34463 -13.07875 -12.85048 -12.76061 -12.47620 -12.42334 -12.08195 -11.97115 -11.78935 -11.58434 -11.47328 -11.37885 -11.33613 -11.23207 -10.82341 -10.64590 -10.18988 -10.02674 -9.99072 -9.85585 -9.82214 -9.35321 -8.94891 -8.69604 -8.63059 -7.90470 -6.14363 -4.15327 1.39579 1.62687 3.04872 3.27977 3.35196 3.40744 3.52286 3.69253 3.77102 4.07371 4.15382 4.19404 4.38337 4.65776 4.75506 4.80964 4.85964 4.90223 4.99037 4.99849 5.03815 5.07023 5.07494 5.19734 5.22886 5.27076 5.31237 5.34792 5.38197 5.40373 5.43430 5.47603 5.59096 5.63538 5.79987 5.91551 5.95211 6.11814 6.31649 6.41009 6.50087 6.54707 6.63168 6.66377 6.68030 6.88704 7.00320 7.10538 7.22471 7.61723 7.92124 8.37813 8.86242 9.45901 10.98106 Molecular weight = 335.19amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.001965 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.109173 B =14246.641441 C =14876.901637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.086 3.914 4 H 0.080 0.920 5 C 0.009 3.991 6 N -0.497 5.497 7 C 0.088 3.912 8 C -0.045 4.045 9 C -0.163 4.163 10 C -0.080 4.080 11 C -0.209 4.209 12 C 0.144 3.856 13 O -0.320 6.320 14 C 0.073 3.927 15 C -0.009 4.009 16 C -0.527 4.527 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.881 3.119 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.263 1.263 24 C -0.139 4.139 25 C 0.013 3.987 26 C 0.086 3.914 27 H 0.080 0.920 28 O -0.361 6.361 29 C 0.027 3.973 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.131 0.869 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.028 0.972 43 H 0.023 0.977 44 H 0.266 0.734 45 H 0.127 0.873 46 H 0.060 0.940 47 H 0.089 0.911 48 H 0.041 0.959 49 H 0.086 0.914 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.572 -27.869 8.026 32.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.277 6.277 3 C 0.027 3.973 4 H 0.098 0.902 5 C -0.119 4.119 6 N -0.222 5.222 7 C -0.039 4.039 8 C -0.045 4.045 9 C -0.182 4.182 10 C -0.098 4.098 11 C -0.228 4.228 12 C 0.097 3.903 13 O -0.233 6.233 14 C -0.001 4.001 15 C -0.046 4.046 16 C -0.565 4.565 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.707 3.293 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.187 1.187 24 C -0.158 4.158 25 C -0.116 4.116 26 C 0.027 3.973 27 H 0.098 0.902 28 O -0.278 6.278 29 C -0.070 4.070 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.149 0.851 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.042 0.958 44 H 0.076 0.924 45 H 0.145 0.855 46 H 0.078 0.922 47 H 0.108 0.892 48 H 0.060 0.940 49 H 0.104 0.896 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.727 -27.360 8.039 31.649 hybrid contribution -0.330 0.250 -0.317 0.522 sum -14.057 -27.110 7.722 31.499 Atomic orbital electron populations 1.22837 0.81412 1.02823 0.99919 1.88085 1.19082 1.25829 1.94736 1.23021 0.93718 0.85521 0.95024 0.90181 1.23669 0.93641 0.97526 0.97097 1.65384 1.02909 1.44686 1.09198 1.21181 0.94831 0.97271 0.90640 1.19270 0.93732 0.93100 0.98435 1.20784 0.92531 0.99311 1.05586 1.20853 0.98573 0.92647 0.97717 1.21407 0.96927 0.97157 1.07341 1.19133 0.93304 0.84487 0.93366 1.86122 1.38475 1.14831 1.83866 1.23070 0.85732 0.90802 1.00527 1.19585 0.98377 0.89068 0.97615 1.20839 0.94451 0.92243 1.48928 0.90759 1.24936 0.96836 0.96857 0.94417 1.69890 1.29292 1.05237 1.49148 0.86755 0.84593 0.78913 0.78991 1.20051 1.21176 1.18746 1.20219 0.98029 0.91507 1.06092 1.23687 0.96654 0.96773 0.94436 1.23027 0.92744 0.85123 0.96405 0.90169 1.88064 1.67876 1.25087 1.46763 1.22849 0.93456 1.02784 0.87898 0.89577 0.94050 0.94057 0.89407 0.92187 0.89520 0.93168 0.86813 0.86152 0.85150 0.92557 0.92528 0.95415 0.95833 0.92447 0.85474 0.92209 0.89230 0.94040 0.89568 0.93967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.87 101.05 1.10 1.27 16 2 O -0.36 -3.47 9.48 -56.60 -0.54 -4.01 16 3 C 0.09 0.75 3.52 -25.35 -0.09 0.66 16 4 H 0.08 0.59 7.85 -51.93 -0.41 0.19 16 5 C 0.01 0.08 6.19 -2.18 -0.01 0.06 16 6 N -0.50 -4.93 5.33 -231.40 -1.23 -6.17 16 7 C 0.09 0.88 4.98 -4.98 -0.02 0.85 16 8 C -0.04 -0.55 5.19 -104.65 -0.54 -1.09 16 9 C -0.16 -1.92 8.93 -39.56 -0.35 -2.28 16 10 C -0.08 -1.01 10.04 -39.61 -0.40 -1.41 16 11 C -0.21 -3.19 9.04 -39.43 -0.36 -3.55 16 12 C 0.14 2.42 6.69 -39.22 -0.26 2.16 16 13 O -0.32 -6.28 10.14 -19.44 -0.20 -6.47 16 14 C 0.07 1.50 4.68 37.15 0.17 1.68 16 15 C -0.01 -0.22 4.41 -27.89 -0.12 -0.34 16 16 C -0.53 -14.84 9.66 -34.44 -0.33 -15.17 16 17 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 19 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 20 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 24 C -0.14 -2.03 9.64 -39.44 -0.38 -2.41 16 25 C 0.01 0.12 5.44 -2.18 -0.01 0.11 16 26 C 0.09 0.78 3.54 -25.35 -0.09 0.69 16 27 H 0.08 0.65 7.81 -51.93 -0.41 0.24 16 28 O -0.36 -3.62 9.49 -56.60 -0.54 -4.16 16 29 C 0.03 0.19 10.85 101.05 1.10 1.28 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.22 8.10 -51.93 -0.42 -0.20 16 32 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.53 7.94 -51.93 -0.41 0.12 16 35 H 0.09 0.80 8.02 -51.93 -0.42 0.38 16 36 H 0.05 0.46 7.71 -51.93 -0.40 0.06 16 37 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.13 1.98 6.30 -52.49 -0.33 1.65 16 40 H 0.06 1.12 7.66 -51.92 -0.40 0.73 16 41 H 0.06 1.13 7.66 -51.93 -0.40 0.73 16 42 H 0.03 0.68 7.20 -51.92 -0.37 0.30 16 43 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 46 H 0.06 0.59 7.69 -51.93 -0.40 0.19 16 47 H 0.09 0.88 7.89 -51.93 -0.41 0.47 16 48 H 0.04 0.25 8.10 -51.93 -0.42 -0.17 16 49 H 0.09 0.50 8.14 -51.92 -0.42 0.07 16 50 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 404.44 15.07 6.09 6.09 Total: -1.00 -32.17 404.44 -9.57 -41.74 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -8.55 Total: -1.95 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -0.71 Total: -15.53 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: -0.46 Total: -32.63 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -1.27 Total: -14.64 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.17 -9.57 -41.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488534310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.216 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds