Wall clock time and date at job start Tue Mar 31 2020 19:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00271 * 2 1 4 4 H 1.08993 * 109.47278 * 7.52680 * 3 2 1 5 5 C 1.53002 * 109.46946 * 247.52628 * 3 2 1 6 6 N 1.46901 * 109.47088 * 65.16822 * 5 3 2 7 7 C 1.46897 * 111.00025 * 174.24617 * 6 5 3 8 8 C 1.53007 * 109.46978 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47091 * 305.00248 * 8 7 6 10 10 O 1.42903 * 109.46725 * 65.00024 * 8 7 6 11 11 C 1.52999 * 109.47065 * 184.99887 * 8 7 6 12 12 O 1.42902 * 109.46909 * 175.00353 * 11 8 7 13 13 C 1.35674 * 116.99572 * 180.02562 * 12 11 8 14 14 C 1.39312 * 119.82285 * 359.72185 * 13 12 11 15 15 C 1.36435 * 120.18829 * 179.76691 * 14 13 12 16 16 C 1.40834 * 119.80733 * 0.50717 * 15 14 13 17 17 C 1.41217 * 120.17412 * 179.72527 * 16 15 14 18 18 H 1.07995 * 120.00428 * 26.07677 * 17 16 15 19 19 C 1.39897 * 119.99767 * 206.07493 * 17 16 15 20 20 N 1.30883 * 119.99733 * 13.30294 * 19 17 16 21 21 Si 1.86796 * 120.00202 * 193.30239 * 19 17 16 22 22 H 1.48504 * 109.47165 * 89.99862 * 21 19 17 23 23 H 1.48493 * 109.47362 * 210.00266 * 21 19 17 24 24 H 1.48508 * 109.46995 * 330.00221 * 21 19 17 25 25 C 1.40827 * 119.64544 * 359.74590 * 16 15 14 26 26 C 1.36435 * 119.81033 * 359.97438 * 25 16 15 27 27 C 1.53003 * 109.47494 * 127.52831 * 3 2 1 28 28 C 1.52999 * 117.49583 * 8.74386 * 27 3 2 29 29 C 1.52999 * 117.49715 * 300.08740 * 27 3 2 30 30 H 1.08999 * 109.47362 * 184.19082 * 1 2 3 31 31 H 1.09007 * 109.47119 * 304.19369 * 1 2 3 32 32 H 1.08997 * 109.46850 * 64.19065 * 1 2 3 33 33 H 1.09002 * 109.47421 * 305.16580 * 5 3 2 34 34 H 1.08997 * 109.47127 * 185.16495 * 5 3 2 35 35 H 1.00900 * 110.99809 * 298.19986 * 6 5 3 36 36 H 1.08998 * 109.47144 * 59.99995 * 7 6 5 37 37 H 1.08994 * 109.47211 * 299.99296 * 7 6 5 38 38 H 0.96698 * 114.00199 * 60.00177 * 10 8 7 39 39 H 1.08998 * 109.47409 * 295.00007 * 11 8 7 40 40 H 1.08997 * 109.47220 * 55.00013 * 11 8 7 41 41 H 1.07995 * 119.90289 * 0.02562 * 14 13 12 42 42 H 1.08001 * 120.09605 * 180.25306 * 15 14 13 43 43 H 0.97003 * 119.99522 * 180.02562 * 20 19 17 44 44 H 1.08006 * 120.09557 * 179.97438 * 25 16 15 45 45 H 1.07998 * 119.90768 * 179.97438 * 26 25 16 46 46 H 1.08995 * 115.55107 * 154.41446 * 27 3 2 47 47 H 1.08996 * 117.50126 * 0.02562 * 28 27 3 48 48 H 1.09003 * 117.49350 * 145.01838 * 28 27 3 49 49 H 1.09000 * 117.49267 * 214.97809 * 29 27 3 50 50 H 1.09000 * 117.49778 * 359.97172 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2274 2.0517 0.1346 5 6 2.7214 1.5470 -1.3330 6 7 1.7326 1.5656 -2.4192 7 6 2.3603 1.9303 -3.6963 8 6 1.3016 1.9385 -4.8009 9 1 0.7947 0.9738 -4.8255 10 8 0.3486 2.9708 -4.5396 11 6 1.9748 2.1956 -6.1506 12 8 1.0050 2.0879 -7.1947 13 6 1.4414 2.2887 -8.4635 14 6 2.7815 2.5901 -8.6958 15 6 3.2293 2.7887 -9.9692 16 6 2.3303 2.6988 -11.0495 17 6 2.7843 2.9086 -12.3701 18 1 3.8178 2.7224 -12.6219 19 6 1.8951 3.3577 -13.3523 20 7 0.7239 3.8300 -13.0082 21 14 2.3792 3.2835 -15.1549 22 1 1.9616 1.9780 -15.7263 23 1 1.7093 4.3840 -15.8932 24 1 3.8520 3.4294 -15.2783 25 6 0.9761 2.3988 -10.8056 26 6 0.5457 2.1974 -9.5267 27 6 3.0205 1.4140 1.1440 28 6 3.3708 0.1314 1.9011 29 6 2.5014 1.2007 2.5674 30 1 -0.3634 -1.0249 0.0751 31 1 -0.3634 0.5776 0.8501 32 1 -0.3633 0.4474 -0.9251 33 1 3.4414 0.7481 -1.5107 34 1 3.2418 2.5041 -1.2989 35 1 1.2569 0.6787 -2.4904 36 1 3.1347 1.2035 -3.9411 37 1 2.8057 2.9215 -3.6122 38 1 0.7302 3.8585 -4.5036 39 1 2.4057 3.1967 -6.1569 40 1 2.7630 1.4597 -6.3095 41 1 3.4687 2.6627 -7.8659 42 1 4.2694 3.0184 -10.1478 43 1 0.1073 4.1411 -13.6893 44 1 0.2803 2.3284 -11.6286 45 1 -0.4926 1.9677 -9.3379 46 1 3.8141 2.1475 1.0023 47 1 2.8819 -0.7897 1.5840 48 1 4.3949 0.0214 2.2578 49 1 2.9540 1.7938 3.3621 50 1 1.4402 0.9836 2.6888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516965607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:53 Heat of formation + Delta-G solvation = -91.393180 kcal Electronic energy + Delta-G solvation = -27755.856224 eV Core-core repulsion = 23748.979728 eV Total energy + Delta-G solvation = -4006.876496 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.56822 -39.04213 -37.71232 -36.34624 -36.13816 -35.15144 -33.29626 -31.19171 -29.90744 -29.16834 -28.69884 -26.68097 -25.33410 -24.44568 -22.87872 -22.46801 -22.06241 -20.77659 -20.59235 -20.54435 -17.38036 -17.34300 -17.06070 -16.75123 -16.41424 -16.08705 -15.90727 -15.20056 -15.09071 -14.87575 -14.69326 -14.10306 -14.03558 -13.92687 -13.72528 -13.32240 -12.94814 -12.73759 -12.51017 -12.26792 -12.18632 -12.12807 -11.86993 -11.74465 -11.67027 -11.55469 -11.38517 -11.15577 -10.97452 -10.81044 -10.74696 -10.61149 -10.35186 -10.07530 -9.94582 -9.82251 -9.73911 -9.31847 -9.06070 -8.70551 -7.64328 -7.00236 -6.68427 -4.26858 2.77966 2.95044 3.09092 3.12316 3.21140 3.21979 3.49072 3.62184 3.96059 4.12173 4.39977 4.50624 4.52834 4.61689 4.64433 4.82504 4.87457 4.92120 4.97478 5.03866 5.11369 5.16630 5.21165 5.27977 5.31511 5.34079 5.43788 5.47413 5.54685 5.58465 5.60835 5.67223 5.75653 5.91480 6.01489 6.05547 6.22447 6.62337 6.73314 6.85286 6.97690 7.04732 7.11478 7.19786 7.47524 7.56188 7.75364 7.78754 8.01109 8.21726 8.45534 8.65885 8.91075 8.98778 10.25475 Molecular weight = 335.19amu Principal moments of inertia in cm(-1) A = 0.038801 B = 0.001549 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.454447 B =18070.429396 C =18438.558275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.384 6.384 3 C 0.122 3.878 4 H 0.077 0.923 5 C 0.050 3.950 6 N -0.680 5.680 7 C 0.031 3.969 8 C 0.115 3.885 9 H 0.103 0.897 10 O -0.541 6.541 11 C 0.038 3.962 12 O -0.317 6.317 13 C -0.006 4.006 14 C -0.171 4.171 15 C -0.196 4.196 16 C 0.085 3.915 17 C -0.463 4.463 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.804 5.804 21 Si 0.910 3.090 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.129 4.129 26 C -0.121 4.121 27 C -0.168 4.168 28 C -0.164 4.164 29 C -0.176 4.176 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.345 0.655 36 H 0.042 0.958 37 H 0.079 0.921 38 H 0.371 0.629 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.279 0.721 44 H 0.130 0.870 45 H 0.098 0.902 46 H 0.112 0.888 47 H 0.105 0.895 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.474 -4.224 25.126 25.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.302 6.302 3 C 0.063 3.937 4 H 0.095 0.905 5 C -0.080 4.080 6 N -0.311 5.311 7 C -0.099 4.099 8 C 0.055 3.945 9 H 0.120 0.880 10 O -0.345 6.345 11 C -0.039 4.039 12 O -0.233 6.233 13 C -0.049 4.049 14 C -0.190 4.190 15 C -0.216 4.216 16 C 0.083 3.917 17 C -0.493 4.493 18 H 0.094 0.906 19 C -0.144 4.144 20 N -0.431 5.431 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.149 4.149 26 C -0.140 4.140 27 C -0.187 4.187 28 C -0.201 4.201 29 C -0.213 4.213 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.164 0.836 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.218 0.782 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.147 0.853 45 H 0.116 0.884 46 H 0.130 0.870 47 H 0.124 0.876 48 H 0.108 0.892 49 H 0.111 0.889 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.566 -4.187 25.212 25.605 hybrid contribution 1.309 0.041 -1.060 1.685 sum 2.874 -4.145 24.152 24.673 Atomic orbital electron populations 1.22884 0.80719 1.02478 1.00651 1.87871 1.19890 1.27588 1.94900 1.21587 0.94606 0.85213 0.92263 0.90501 1.22296 0.93852 1.01238 0.90603 1.60345 1.29077 1.37932 1.03762 1.22573 0.96005 1.01672 0.89626 1.21834 0.89713 0.93232 0.89685 0.87960 1.86627 1.36035 1.17757 1.94076 1.23110 0.92150 1.00858 0.87796 1.85890 1.35798 1.88377 1.13191 1.18654 0.93108 1.10686 0.82490 1.20392 0.93771 1.07613 0.97193 1.20578 0.98919 1.10163 0.91909 1.17618 0.91596 0.89763 0.92711 1.19471 0.96850 1.39786 0.93196 0.90639 1.25874 0.94418 0.92694 1.01378 1.69808 1.07537 1.30060 1.35684 0.86281 0.79789 0.78639 0.81776 1.19385 1.20367 1.18777 1.21075 0.97316 1.01953 0.94532 1.19872 0.97206 1.05456 0.91476 1.22582 1.01871 1.01870 0.92391 1.22879 1.00226 0.94131 1.02864 1.22911 1.00163 1.03422 0.94833 0.89919 0.94227 0.92971 0.94233 0.90077 0.83629 0.93986 0.90296 0.78228 0.92859 0.92571 0.88973 0.88771 0.90978 0.85275 0.88406 0.86976 0.87649 0.89221 0.88897 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.64 101.05 1.08 1.28 16 2 O -0.38 -3.31 8.33 -35.23 -0.29 -3.61 16 3 C 0.12 0.95 2.83 -26.73 -0.08 0.87 16 4 H 0.08 0.63 7.60 -51.93 -0.39 0.23 16 5 C 0.05 0.40 5.36 -3.82 -0.02 0.38 16 6 N -0.68 -6.34 6.42 -113.78 -0.73 -7.07 16 7 C 0.03 0.30 5.31 -3.82 -0.02 0.28 16 8 C 0.12 1.44 3.43 -26.73 -0.09 1.35 16 9 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 10 O -0.54 -7.45 13.25 -40.08 -0.53 -7.98 16 11 C 0.04 0.58 4.37 37.16 0.16 0.74 16 12 O -0.32 -6.52 10.09 -23.57 -0.24 -6.76 16 13 C -0.01 -0.14 6.71 -38.78 -0.26 -0.40 16 14 C -0.17 -3.86 8.96 -39.83 -0.36 -4.22 16 15 C -0.20 -4.83 9.74 -39.25 -0.38 -5.21 16 16 C 0.09 2.29 5.57 -106.81 -0.60 1.70 16 17 C -0.46 -12.34 9.05 -37.83 -0.34 -12.68 16 18 H 0.08 1.93 7.88 -52.49 -0.41 1.52 16 19 C 0.07 1.83 5.22 -17.34 -0.09 1.74 16 20 N -0.80 -20.97 10.79 55.55 0.60 -20.37 16 21 Si 0.91 18.83 29.58 -169.99 -5.03 13.80 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 25 C -0.13 -3.41 8.63 -39.25 -0.34 -3.75 16 26 C -0.12 -2.98 9.92 -39.83 -0.40 -3.37 16 27 C -0.17 -1.17 5.71 -90.62 -0.52 -1.69 16 28 C -0.16 -1.15 9.88 -26.70 -0.26 -1.42 16 29 C -0.18 -1.14 10.19 -26.70 -0.27 -1.41 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.25 8.11 -51.93 -0.42 -0.17 16 32 H 0.05 0.39 7.64 -51.93 -0.40 -0.01 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 35 H 0.35 3.32 7.85 -39.29 -0.31 3.01 16 36 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.37 3.96 9.05 45.56 0.41 4.37 16 39 H 0.05 0.77 7.64 -51.93 -0.40 0.38 16 40 H 0.06 0.81 7.66 -51.93 -0.40 0.42 16 41 H 0.09 1.79 6.27 -52.49 -0.33 1.46 16 42 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 43 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 44 H 0.13 3.49 6.09 -52.48 -0.32 3.17 16 45 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 46 H 0.11 0.68 8.11 -51.93 -0.42 0.26 16 47 H 0.11 0.85 7.06 -51.93 -0.37 0.48 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 409.92 15.07 6.18 6.18 Total: -1.00 -29.87 409.92 -10.37 -40.24 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -7.54 Total: 11.38 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -2.79 Total: -25.81 kcal Atomic # 7 Polarization: -27.31 SS G_CDS: -0.13 Total: -27.44 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -1.06 Total: -18.34 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -29.87 -10.37 -40.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516965607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.155 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds