Wall clock time and date at job start Tue Mar 31 2020 18:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99486 * 2 1 4 4 H 1.48506 * 109.46788 * 239.99653 * 3 2 1 5 5 H 1.48493 * 109.47250 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47152 * 120.00242 * 3 2 1 7 7 C 1.38809 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99587 * 191.99306 * 7 2 1 9 9 N 1.36941 * 120.00067 * 11.99526 * 7 2 1 10 10 C 1.47748 * 121.64487 * 210.58465 * 9 7 2 11 11 C 1.53013 * 108.79560 * 273.72954 * 10 9 7 12 12 N 1.47663 * 108.82398 * 303.58654 * 11 10 9 13 13 C 1.36111 * 116.57315 * 104.03657 * 12 11 10 14 14 O 1.21283 * 120.44997 * 0.04691 * 13 12 11 15 15 C 1.50701 * 119.10334 * 180.02562 * 13 12 11 16 16 C 1.53017 * 109.46251 * 112.62952 * 15 13 12 17 17 N 1.47765 * 108.77778 * 301.82681 * 16 15 13 18 18 C 1.34772 * 121.65354 * 273.18328 * 17 16 15 19 19 O 1.21282 * 119.99823 * 180.02562 * 18 17 16 20 20 C 1.50695 * 119.99918 * 0.03044 * 18 17 16 21 21 C 1.52999 * 109.47174 * 179.97438 * 20 18 17 22 22 H 1.08995 * 110.34992 * 52.70730 * 21 20 18 23 23 C 1.51107 * 110.38558 * 290.29934 * 21 20 18 24 24 C 1.30530 * 111.10531 * 224.75448 * 23 21 20 25 25 C 1.51105 * 111.10270 * 359.97438 * 24 23 21 26 26 C 1.54635 * 104.72601 * 16.43888 * 25 24 23 27 27 C 1.47753 * 116.69615 * 93.21293 * 17 16 15 28 28 C 1.47761 * 121.64902 * 30.60495 * 9 7 2 29 29 H 0.97000 * 120.00731 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.58342 * 153.93748 * 10 9 7 31 31 H 1.08995 * 109.69576 * 33.59014 * 10 9 7 32 32 H 1.09000 * 109.57518 * 183.78997 * 11 10 9 33 33 H 1.09000 * 109.57897 * 63.38998 * 11 10 9 34 34 H 0.97001 * 121.71711 * 284.06611 * 12 11 10 35 35 H 1.08999 * 109.47856 * 232.62710 * 15 13 12 36 36 H 1.09000 * 109.47341 * 352.64238 * 15 13 12 37 37 H 1.09003 * 109.57911 * 61.61820 * 16 15 13 38 38 H 1.08992 * 109.58539 * 182.03779 * 16 15 13 39 39 H 1.09004 * 109.47104 * 299.99505 * 20 18 17 40 40 H 1.08996 * 109.47452 * 59.99573 * 20 18 17 41 41 H 1.08004 * 124.44601 * 44.73303 * 23 21 20 42 42 H 1.07993 * 124.44451 * 179.97438 * 24 23 21 43 43 H 1.09001 * 110.38788 * 257.62877 * 25 24 23 44 44 H 1.09000 * 110.38157 * 135.24752 * 25 24 23 45 45 H 1.08992 * 111.03555 * 217.33349 * 26 25 24 46 46 H 1.09005 * 111.06956 * 93.41301 * 26 25 24 47 47 H 1.08996 * 109.58558 * 113.26871 * 27 17 16 48 48 H 1.09007 * 109.69527 * 352.92025 * 27 17 16 49 49 H 1.08998 * 109.57908 * 163.02127 * 28 9 7 50 50 H 1.09001 * 109.57744 * 283.42040 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0726 -1.2121 0.1949 9 7 1.3480 -2.3752 -0.2454 10 6 1.7855 -3.6528 0.3542 11 6 2.8562 -4.2773 -0.5430 12 7 2.3046 -4.4358 -1.9035 13 6 2.7238 -3.5400 -2.8386 14 8 3.5114 -2.6664 -2.5433 15 6 2.1963 -3.6487 -4.2461 16 6 1.3093 -2.4401 -4.5529 17 7 0.2082 -2.3962 -3.5685 18 6 -0.9398 -3.0756 -3.7606 19 8 -1.8244 -3.0177 -2.9330 20 6 -1.1242 -3.9072 -5.0037 21 6 -2.5032 -4.5692 -4.9746 22 1 -3.2787 -3.8224 -4.8047 23 6 -2.5527 -5.6355 -3.9050 24 6 -3.1212 -6.7225 -4.3510 25 6 -3.5463 -6.5623 -5.7921 26 6 -2.7661 -5.3263 -6.2969 27 6 0.4277 -1.5699 -2.3634 28 6 0.1610 -2.4260 -1.1239 29 1 -0.4851 0.8400 -0.0004 30 1 0.9348 -4.3296 0.4331 31 1 2.2004 -3.4703 1.3454 32 1 3.1399 -5.2528 -0.1480 33 1 3.7298 -3.6264 -0.5765 34 1 1.6755 -5.1418 -2.1197 35 1 3.0313 -3.6736 -4.9463 36 1 1.6113 -4.5631 -4.3453 37 1 1.8996 -1.5265 -4.4821 38 1 0.8976 -2.5348 -5.5576 39 1 -1.0461 -3.2681 -5.8833 40 1 -0.3530 -4.6764 -5.0440 41 1 -2.1678 -5.5142 -2.9032 42 1 -3.2684 -7.6187 -3.7666 43 1 -4.6199 -6.3848 -5.8539 44 1 -3.2726 -7.4456 -6.3691 45 1 -3.3754 -4.7292 -6.9753 46 1 -1.8300 -5.6207 -6.7716 47 1 -0.2544 -0.7198 -2.3740 48 1 1.4572 -1.2120 -2.3459 49 1 -0.0268 -3.4566 -1.4249 50 1 -0.7055 -2.0357 -0.5899 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070937607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:58 Heat of formation + Delta-G solvation = -16.271560 kcal Electronic energy + Delta-G solvation = -32025.645577 eV Core-core repulsion = 28054.319350 eV Total energy + Delta-G solvation = -3971.326227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.05718 -39.04033 -38.02008 -35.87821 -35.31356 -33.69476 -31.63206 -31.27816 -30.39609 -29.11557 -28.89998 -26.76278 -25.42227 -24.09227 -23.60912 -21.95863 -20.50499 -20.18844 -19.76248 -18.88129 -18.26901 -17.05969 -16.48601 -16.21871 -15.99467 -15.90875 -15.25134 -14.87009 -14.76460 -14.43794 -14.24378 -13.59514 -13.37505 -13.26088 -13.24093 -12.85268 -12.69323 -12.46439 -12.11869 -11.90341 -11.87826 -11.80918 -11.65625 -11.44082 -11.31886 -11.18636 -11.11044 -11.06220 -10.74485 -10.72634 -10.48985 -10.24709 -9.94449 -9.84839 -9.65528 -9.15265 -9.08645 -8.87694 -8.67062 -8.27929 -8.03049 -6.45878 -5.57502 -3.12762 2.33466 3.12034 3.24662 3.45893 3.50830 3.51219 3.55264 3.85595 4.51271 4.57749 4.59606 4.80125 4.91808 4.98937 5.09709 5.20955 5.33434 5.35535 5.47411 5.50078 5.50969 5.53943 5.57278 5.64479 5.71340 5.72271 5.80642 5.89597 5.92733 6.06010 6.14725 6.16984 6.23442 6.25302 6.54419 6.60313 6.63910 6.64451 6.80698 6.94007 6.98024 7.05569 7.12595 7.55251 7.82359 7.96849 8.10883 8.16245 8.50955 8.75233 8.89434 9.32786 9.92431 10.55623 11.41658 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014589 B = 0.004260 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.761301 B = 6571.127536 C = 7024.901081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.004 3.996 3 Si 0.894 3.106 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.230 4.230 8 H 0.061 0.939 9 N -0.587 5.587 10 C 0.127 3.873 11 C 0.086 3.914 12 N -0.724 5.724 13 C 0.522 3.478 14 O -0.521 6.521 15 C -0.160 4.160 16 C 0.118 3.882 17 N -0.618 5.618 18 C 0.509 3.491 19 O -0.528 6.528 20 C -0.132 4.132 21 C -0.054 4.054 22 H 0.090 0.910 23 C -0.132 4.132 24 C -0.190 4.190 25 C -0.097 4.097 26 C -0.122 4.122 27 C 0.118 3.882 28 C 0.177 3.823 29 H 0.251 0.749 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.393 0.607 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.097 0.903 49 H 0.023 0.977 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.631 -13.709 -13.926 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.195 4.195 3 Si 0.724 3.276 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.210 1.210 7 C -0.361 4.361 8 H 0.079 0.921 9 N -0.311 5.311 10 C -0.001 4.001 11 C -0.041 4.041 12 N -0.377 5.377 13 C 0.308 3.692 14 O -0.395 6.395 15 C -0.202 4.202 16 C -0.007 4.007 17 N -0.353 5.353 18 C 0.296 3.704 19 O -0.405 6.405 20 C -0.172 4.172 21 C -0.073 4.073 22 H 0.108 0.892 23 C -0.149 4.149 24 C -0.208 4.208 25 C -0.134 4.134 26 C -0.160 4.160 27 C -0.003 4.003 28 C 0.052 3.948 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.227 0.773 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.115 0.885 49 H 0.041 0.959 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.685 -12.859 -13.239 18.532 hybrid contribution 0.203 0.609 -0.125 0.654 sum -1.482 -12.249 -13.363 18.189 Atomic orbital electron populations 1.70009 1.04945 1.25153 1.54162 1.25094 0.95183 0.97873 1.01360 0.86489 0.78931 0.83936 0.78206 1.21073 1.21855 1.21009 1.18850 0.90849 0.83690 1.42664 0.92093 1.44468 1.32627 1.02378 1.51586 1.21417 0.94888 0.88957 0.94808 1.22460 0.99834 0.99296 0.82490 1.46298 1.47861 1.32780 1.10728 1.20419 0.81056 0.81220 0.86503 1.90724 1.34617 1.32874 1.81318 1.22225 1.01223 1.00489 0.96249 1.21691 0.88518 0.98171 0.92317 1.49215 1.14604 1.48527 1.22943 1.20377 0.81793 0.80249 0.87988 1.90730 1.40986 1.63080 1.45678 1.21777 0.98747 0.99396 0.97313 1.20824 0.96503 0.96848 0.93102 0.89183 1.23338 0.98372 0.93928 0.99301 1.23199 1.01870 0.98776 0.96992 1.21307 0.99962 0.97932 0.94195 1.22556 1.00338 0.96416 0.96665 1.22566 1.03038 0.92721 0.81992 1.21131 0.90814 0.93838 0.88981 0.93835 0.94521 0.92885 0.93067 0.89384 0.77321 0.88288 0.90686 0.89256 0.90354 0.89383 0.89429 0.85629 0.86253 0.91113 0.91634 0.91053 0.91059 0.92148 0.88452 0.95884 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.10 10.14 55.49 0.56 -25.54 16 2 C 0.00 0.10 4.37 -17.43 -0.08 0.02 16 3 Si 0.89 22.39 29.57 -169.99 -5.03 17.36 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 6 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.23 -6.28 8.54 -15.06 -0.13 -6.41 16 8 H 0.06 1.72 7.86 -52.48 -0.41 1.31 16 9 N -0.59 -14.32 2.36 -171.20 -0.40 -14.72 16 10 C 0.13 2.57 6.08 -3.35 -0.02 2.55 16 11 C 0.09 1.46 6.64 -3.40 -0.02 1.44 16 12 N -0.72 -11.33 4.29 -59.14 -0.25 -11.58 16 13 C 0.52 8.89 4.87 -10.38 -0.05 8.83 16 14 O -0.52 -11.26 15.63 5.56 0.09 -11.17 16 15 C -0.16 -1.96 6.15 -27.87 -0.17 -2.14 16 16 C 0.12 1.57 5.47 -3.34 -0.02 1.55 16 17 N -0.62 -10.62 2.43 -171.64 -0.42 -11.03 16 18 C 0.51 8.39 6.86 -10.99 -0.08 8.32 16 19 O -0.53 -10.93 13.58 5.56 0.08 -10.85 16 20 C -0.13 -1.50 3.78 -27.89 -0.11 -1.61 16 21 C -0.05 -0.63 2.52 -90.72 -0.23 -0.86 16 22 H 0.09 1.22 7.90 -51.93 -0.41 0.81 16 23 C -0.13 -1.64 9.26 -35.70 -0.33 -1.97 16 24 C -0.19 -2.02 10.78 -35.70 -0.38 -2.40 16 25 C -0.10 -0.86 6.81 -26.82 -0.18 -1.04 16 26 C -0.12 -1.07 6.71 -25.02 -0.17 -1.24 16 27 C 0.12 2.67 3.79 -3.36 -0.01 2.65 16 28 C 0.18 4.26 3.50 -3.35 -0.01 4.25 16 29 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.04 0.70 7.86 -51.93 -0.41 0.30 16 31 H 0.05 1.08 8.12 -51.93 -0.42 0.66 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.76 6.83 -51.93 -0.35 1.41 16 34 H 0.39 5.20 8.74 -40.82 -0.36 4.84 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.75 6.77 -51.93 -0.35 0.40 16 37 H 0.09 1.34 7.76 -51.93 -0.40 0.94 16 38 H 0.08 0.76 6.80 -51.93 -0.35 0.40 16 39 H 0.09 0.83 7.52 -51.93 -0.39 0.44 16 40 H 0.09 0.85 6.95 -51.93 -0.36 0.49 16 41 H 0.13 1.82 7.59 -52.48 -0.40 1.42 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.55 7.91 -51.93 -0.41 0.13 16 47 H 0.06 1.57 7.52 -51.93 -0.39 1.17 16 48 H 0.10 2.46 5.07 -51.93 -0.26 2.19 16 49 H 0.02 0.52 5.91 -51.93 -0.31 0.21 16 50 H 0.06 1.69 6.83 -51.93 -0.35 1.33 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -33.28 376.47 -9.71 -42.99 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -8.02 Total: 6.94 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -1.99 Total: 11.95 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.51 Total: -62.88 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.16 Total: -22.03 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.28 -9.71 -42.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070937607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.719 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds