Wall clock time and date at job start Tue Mar 31 2020 18:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99486 * 2 1 4 4 H 1.48506 * 109.46788 * 239.99653 * 3 2 1 5 5 H 1.48493 * 109.47250 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47152 * 120.00242 * 3 2 1 7 7 C 1.38809 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99587 * 191.99306 * 7 2 1 9 9 N 1.36941 * 120.00067 * 11.99526 * 7 2 1 10 10 C 1.47748 * 121.64487 * 210.58465 * 9 7 2 11 11 C 1.53013 * 108.79560 * 273.72954 * 10 9 7 12 12 N 1.47663 * 108.82398 * 303.58654 * 11 10 9 13 13 C 1.36111 * 116.57315 * 104.03657 * 12 11 10 14 14 O 1.21283 * 120.44997 * 0.04691 * 13 12 11 15 15 C 1.50701 * 119.10334 * 180.02562 * 13 12 11 16 16 C 1.53017 * 109.46251 * 112.62952 * 15 13 12 17 17 N 1.47765 * 108.77778 * 301.82681 * 16 15 13 18 18 C 1.34772 * 121.65354 * 273.18328 * 17 16 15 19 19 O 1.21282 * 119.99823 * 180.02562 * 18 17 16 20 20 C 1.50695 * 119.99918 * 0.03044 * 18 17 16 21 21 C 1.52999 * 109.47174 * 179.97438 * 20 18 17 22 22 H 1.08995 * 110.34992 * 52.70730 * 21 20 18 23 23 C 1.51107 * 110.38558 * 290.29934 * 21 20 18 24 24 C 1.30530 * 111.10531 * 224.75448 * 23 21 20 25 25 C 1.51105 * 111.10270 * 359.97438 * 24 23 21 26 26 C 1.54635 * 104.72601 * 16.43888 * 25 24 23 27 27 C 1.47753 * 116.69615 * 93.21293 * 17 16 15 28 28 C 1.47761 * 121.64902 * 30.60495 * 9 7 2 29 29 H 0.97000 * 120.00731 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.58342 * 153.93748 * 10 9 7 31 31 H 1.08995 * 109.69576 * 33.59014 * 10 9 7 32 32 H 1.09000 * 109.57518 * 183.78997 * 11 10 9 33 33 H 1.09000 * 109.57897 * 63.38998 * 11 10 9 34 34 H 0.97001 * 121.71711 * 284.06611 * 12 11 10 35 35 H 1.08999 * 109.47856 * 232.62710 * 15 13 12 36 36 H 1.09000 * 109.47341 * 352.64238 * 15 13 12 37 37 H 1.09003 * 109.57911 * 61.61820 * 16 15 13 38 38 H 1.08992 * 109.58539 * 182.03779 * 16 15 13 39 39 H 1.09004 * 109.47104 * 299.99505 * 20 18 17 40 40 H 1.08996 * 109.47452 * 59.99573 * 20 18 17 41 41 H 1.08004 * 124.44601 * 44.73303 * 23 21 20 42 42 H 1.07993 * 124.44451 * 179.97438 * 24 23 21 43 43 H 1.09001 * 110.38788 * 257.62877 * 25 24 23 44 44 H 1.09000 * 110.38157 * 135.24752 * 25 24 23 45 45 H 1.08992 * 111.03555 * 217.33349 * 26 25 24 46 46 H 1.09005 * 111.06956 * 93.41301 * 26 25 24 47 47 H 1.08996 * 109.58558 * 113.26871 * 27 17 16 48 48 H 1.09007 * 109.69527 * 352.92025 * 27 17 16 49 49 H 1.08998 * 109.57908 * 163.02127 * 28 9 7 50 50 H 1.09001 * 109.57744 * 283.42040 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0726 -1.2121 0.1949 9 7 1.3480 -2.3752 -0.2454 10 6 1.7855 -3.6528 0.3542 11 6 2.8562 -4.2773 -0.5430 12 7 2.3046 -4.4358 -1.9035 13 6 2.7238 -3.5400 -2.8386 14 8 3.5114 -2.6664 -2.5433 15 6 2.1963 -3.6487 -4.2461 16 6 1.3093 -2.4401 -4.5529 17 7 0.2082 -2.3962 -3.5685 18 6 -0.9398 -3.0756 -3.7606 19 8 -1.8244 -3.0177 -2.9330 20 6 -1.1242 -3.9072 -5.0037 21 6 -2.5032 -4.5692 -4.9746 22 1 -3.2787 -3.8224 -4.8047 23 6 -2.5527 -5.6355 -3.9050 24 6 -3.1212 -6.7225 -4.3510 25 6 -3.5463 -6.5623 -5.7921 26 6 -2.7661 -5.3263 -6.2969 27 6 0.4277 -1.5699 -2.3634 28 6 0.1610 -2.4260 -1.1239 29 1 -0.4851 0.8400 -0.0004 30 1 0.9348 -4.3296 0.4331 31 1 2.2004 -3.4703 1.3454 32 1 3.1399 -5.2528 -0.1480 33 1 3.7298 -3.6264 -0.5765 34 1 1.6755 -5.1418 -2.1197 35 1 3.0313 -3.6736 -4.9463 36 1 1.6113 -4.5631 -4.3453 37 1 1.8996 -1.5265 -4.4821 38 1 0.8976 -2.5348 -5.5576 39 1 -1.0461 -3.2681 -5.8833 40 1 -0.3530 -4.6764 -5.0440 41 1 -2.1678 -5.5142 -2.9032 42 1 -3.2684 -7.6187 -3.7666 43 1 -4.6199 -6.3848 -5.8539 44 1 -3.2726 -7.4456 -6.3691 45 1 -3.3754 -4.7292 -6.9753 46 1 -1.8300 -5.6207 -6.7716 47 1 -0.2544 -0.7198 -2.3740 48 1 1.4572 -1.2120 -2.3459 49 1 -0.0268 -3.4566 -1.4249 50 1 -0.7055 -2.0357 -0.5899 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070937607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:57 Heat of formation + Delta-G solvation = -38.711703 kcal Electronic energy + Delta-G solvation = -32026.618655 eV Core-core repulsion = 28054.319350 eV Total energy + Delta-G solvation = -3972.299305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.35052 -40.26050 -39.08920 -37.68559 -36.69035 -35.27357 -33.22893 -32.61544 -31.79956 -30.64608 -29.69744 -28.41752 -26.85499 -25.48863 -25.02868 -23.46288 -22.00943 -21.27161 -21.16024 -19.99887 -19.34908 -18.57430 -18.17956 -17.48187 -17.41888 -16.91783 -16.62785 -16.42631 -16.17306 -15.78692 -15.55357 -15.21640 -15.07941 -14.73098 -14.60369 -14.21905 -14.07678 -13.74699 -13.38688 -13.23767 -13.10605 -12.96113 -12.84613 -12.74621 -12.65716 -12.56881 -12.34786 -12.31995 -12.03386 -11.99552 -11.89115 -11.84837 -11.82248 -11.63361 -11.54808 -10.70763 -10.54401 -10.45906 -9.86444 -9.71260 -9.54084 -8.50874 -7.71743 -5.29719 1.40545 1.42662 1.46886 1.49370 1.84211 1.94520 2.17122 2.51144 2.63998 3.34787 3.56642 3.69767 3.81687 3.93382 3.97846 4.05203 4.12494 4.34501 4.39687 4.44575 4.55078 4.55600 4.59154 4.64539 4.69619 4.73497 4.76634 4.78386 4.84875 4.86560 4.89311 5.01471 5.05428 5.06560 5.09036 5.19370 5.26350 5.30897 5.38691 5.51334 5.66633 5.73103 5.76884 5.79476 5.86127 6.07265 6.38386 6.73213 6.87124 7.19296 7.42801 7.62463 7.87221 8.45787 9.23132 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014589 B = 0.004260 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.761301 B = 6571.127536 C = 7024.901081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.041 4.041 3 Si 0.945 3.055 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.225 4.225 8 H 0.049 0.951 9 N -0.600 5.600 10 C 0.121 3.879 11 C 0.099 3.901 12 N -0.717 5.717 13 C 0.510 3.490 14 O -0.574 6.574 15 C -0.149 4.149 16 C 0.113 3.887 17 N -0.620 5.620 18 C 0.504 3.496 19 O -0.580 6.580 20 C -0.118 4.118 21 C -0.055 4.055 22 H 0.059 0.941 23 C -0.164 4.164 24 C -0.173 4.173 25 C -0.099 4.099 26 C -0.112 4.112 27 C 0.146 3.854 28 C 0.201 3.799 29 H 0.243 0.757 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.409 0.591 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.132 0.868 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.015 0.985 48 H 0.072 0.928 49 H 0.037 0.963 50 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.978 -16.675 -17.522 24.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.237 4.237 3 Si 0.775 3.225 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.355 4.355 8 H 0.067 0.933 9 N -0.324 5.324 10 C -0.006 4.006 11 C -0.028 4.028 12 N -0.370 5.370 13 C 0.298 3.702 14 O -0.452 6.452 15 C -0.190 4.190 16 C -0.009 4.009 17 N -0.354 5.354 18 C 0.294 3.706 19 O -0.459 6.459 20 C -0.157 4.157 21 C -0.074 4.074 22 H 0.077 0.923 23 C -0.183 4.183 24 C -0.191 4.191 25 C -0.136 4.136 26 C -0.149 4.149 27 C 0.022 3.978 28 C 0.076 3.924 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.245 0.755 35 H 0.149 0.851 36 H 0.128 0.872 37 H 0.085 0.915 38 H 0.150 0.850 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.113 0.887 42 H 0.145 0.855 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.101 0.899 46 H 0.113 0.887 47 H 0.033 0.967 48 H 0.090 0.910 49 H 0.055 0.945 50 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -1.016 -15.895 -16.868 23.199 hybrid contribution -0.042 1.429 1.059 1.779 sum -1.059 -14.466 -15.809 21.455 Atomic orbital electron populations 1.70192 1.06078 1.24922 1.55906 1.25624 0.95690 1.00328 1.02022 0.85669 0.77790 0.80942 0.78124 1.21214 1.22103 1.20293 1.18879 0.90366 0.84972 1.41333 0.93301 1.44619 1.32303 1.03234 1.52208 1.21642 0.96219 0.87492 0.95241 1.22139 0.97235 1.00521 0.82874 1.46288 1.47820 1.32982 1.09958 1.21377 0.80145 0.80132 0.88527 1.90707 1.37017 1.34931 1.82579 1.22254 1.02351 1.01211 0.93214 1.21988 0.87412 0.97980 0.93566 1.49170 1.16417 1.47862 1.21973 1.21452 0.80349 0.79662 0.89122 1.90724 1.42606 1.64673 1.47895 1.21833 0.99607 0.99507 0.94786 1.20814 0.95749 0.96178 0.94656 0.92269 1.23216 1.00980 0.95443 0.98627 1.23493 0.99333 0.98166 0.98138 1.21386 1.00200 0.99063 0.92907 1.22556 1.01648 0.95728 0.94977 1.21756 0.99751 0.91969 0.84299 1.20699 0.88696 0.94125 0.88889 0.94770 0.93423 0.93471 0.88683 0.92314 0.75506 0.85093 0.87215 0.91496 0.85000 0.86175 0.86217 0.88716 0.85457 0.90859 0.89438 0.89881 0.88703 0.96672 0.91014 0.94520 0.98112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.05 10.14 21.65 0.22 -56.83 16 2 C -0.04 -2.38 4.37 84.86 0.37 -2.01 16 3 Si 0.95 47.91 29.57 68.60 2.03 49.94 16 4 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 5 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 6 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 7 C -0.22 -12.77 8.54 84.03 0.72 -12.06 16 8 H 0.05 2.87 7.86 -2.91 -0.02 2.85 16 9 N -0.60 -30.43 2.36 -695.56 -1.64 -32.07 16 10 C 0.12 4.92 6.08 86.14 0.52 5.45 16 11 C 0.10 3.29 6.64 86.16 0.57 3.86 16 12 N -0.72 -21.12 4.29 -458.64 -1.97 -23.09 16 13 C 0.51 16.55 4.87 87.45 0.43 16.97 16 14 O -0.57 -24.92 15.63 -3.04 -0.05 -24.96 16 15 C -0.15 -3.05 6.15 29.85 0.18 -2.86 16 16 C 0.11 2.69 5.47 86.14 0.47 3.16 16 17 N -0.62 -20.95 2.43 -815.35 -1.98 -22.92 16 18 C 0.50 16.18 6.86 87.66 0.60 16.79 16 19 O -0.58 -24.93 13.58 -3.04 -0.04 -24.97 16 20 C -0.12 -2.22 3.78 29.85 0.11 -2.11 16 21 C -0.06 -1.15 2.52 -10.86 -0.03 -1.18 16 22 H 0.06 1.59 7.90 -2.39 -0.02 1.57 16 23 C -0.16 -3.92 9.26 26.26 0.24 -3.68 16 24 C -0.17 -3.25 10.78 26.26 0.28 -2.97 16 25 C -0.10 -1.36 6.81 30.53 0.21 -1.16 16 26 C -0.11 -1.45 6.71 31.70 0.21 -1.23 16 27 C 0.15 6.93 3.79 86.14 0.33 7.26 16 28 C 0.20 10.17 3.50 86.14 0.30 10.47 16 29 H 0.24 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.05 1.82 7.86 -2.39 -0.02 1.80 16 31 H 0.05 1.95 8.12 -2.39 -0.02 1.93 16 32 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.06 2.36 6.83 -2.39 -0.02 2.34 16 34 H 0.41 9.56 8.74 -92.71 -0.81 8.75 16 35 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.11 1.51 6.77 -2.39 -0.02 1.49 16 37 H 0.07 1.93 7.76 -2.39 -0.02 1.92 16 38 H 0.13 1.79 6.80 -2.39 -0.02 1.77 16 39 H 0.12 1.57 7.52 -2.38 -0.02 1.55 16 40 H 0.12 1.56 6.95 -2.39 -0.02 1.55 16 41 H 0.09 2.82 7.59 -2.91 -0.02 2.79 16 42 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.09 0.83 7.91 -2.38 -0.02 0.81 16 47 H 0.01 0.84 7.52 -2.39 -0.02 0.82 16 48 H 0.07 3.80 5.07 -2.38 -0.01 3.79 16 49 H 0.04 1.71 5.91 -2.39 -0.01 1.69 16 50 H 0.00 0.06 6.83 -2.39 -0.02 0.04 16 Total: -1.00 -82.58 376.47 2.23 -80.35 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.14 Total: 19.87 kcal Atomic # 6 Polarization: 29.17 SS G_CDS: 5.53 Total: 34.70 kcal Atomic # 7 Polarization: -129.55 SS G_CDS: -5.37 Total: -134.92 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.09 Total: -49.93 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -82.58 2.23 -80.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070937607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.641 kcal (2) G-P(sol) polarization free energy of solvation -82.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds