Wall clock time and date at job start Tue Mar 31 2020 19:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54924 * 1 3 3 C 1.53117 * 106.69578 * 2 1 4 4 C 1.51927 * 107.23406 * 118.77822 * 2 1 3 5 5 C 1.51684 * 113.92418 * 165.55258 * 4 2 1 6 6 H 1.11389 * 106.96159 * 192.10127 * 5 4 2 7 7 N 1.46065 * 111.90302 * 76.15530 * 5 4 2 8 8 C 1.34777 * 119.99801 * 77.77413 * 7 5 4 9 9 O 1.21282 * 119.99730 * 0.02562 * 8 7 5 10 10 C 1.50698 * 119.99971 * 180.02562 * 8 7 5 11 11 C 1.47197 * 109.47181 * 180.02562 * 10 8 7 12 12 N 7.12024 * 122.64763 * 67.18264 * 2 1 3 13 13 C 1.51690 * 112.43111 * 309.21959 * 5 4 2 14 14 C 1.51923 * 113.91954 * 50.79331 * 13 5 4 15 15 C 1.53116 * 110.81508 * 78.34312 * 14 13 5 16 16 C 1.54927 * 107.22989 * 194.42392 * 14 13 5 17 17 N 1.46496 * 109.47312 * 299.99925 * 16 14 13 18 18 C 1.34776 * 119.99968 * 180.02562 * 17 16 14 19 19 O 1.21684 * 120.00304 * 0.02562 * 18 17 16 20 20 C 1.46375 * 119.99914 * 179.97438 * 18 17 16 21 21 H 1.07998 * 120.00241 * 6.74858 * 20 18 17 22 22 C 1.40048 * 119.99847 * 186.74781 * 20 18 17 23 23 N 1.30665 * 120.00331 * 6.79333 * 22 20 18 24 24 Si 1.86809 * 120.00005 * 186.79144 * 22 20 18 25 25 H 1.48502 * 109.46851 * 84.98855 * 24 22 20 26 26 H 1.48502 * 109.46677 * 324.99249 * 24 22 20 27 27 H 1.48496 * 109.47064 * 204.99115 * 24 22 20 28 28 C 1.51619 * 107.37205 * 240.69518 * 2 1 3 29 29 H 1.09003 * 109.46962 * 301.22135 * 1 2 3 30 30 H 1.09001 * 109.47271 * 61.22076 * 1 2 3 31 31 H 1.09005 * 109.46899 * 181.22335 * 1 2 3 32 32 H 1.09000 * 109.47358 * 176.41901 * 3 2 1 33 33 H 1.09009 * 109.46680 * 296.41891 * 3 2 1 34 34 H 1.08996 * 109.46860 * 56.41259 * 3 2 1 35 35 H 1.09955 * 108.89887 * 43.56885 * 4 2 1 36 36 H 1.09955 * 108.88575 * 287.49862 * 4 2 1 37 37 H 0.97001 * 119.99892 * 257.78044 * 7 5 4 38 38 H 1.09009 * 109.46905 * 299.99784 * 10 8 7 39 39 H 1.08995 * 109.47332 * 60.00377 * 10 8 7 40 40 H 1.09949 * 109.07199 * 288.90457 * 13 5 4 41 41 H 1.09957 * 109.04971 * 172.65504 * 13 5 4 42 42 H 1.09008 * 109.46868 * 176.42062 * 15 14 13 43 43 H 1.09004 * 109.46900 * 296.41336 * 15 14 13 44 44 H 1.08997 * 109.47605 * 56.41716 * 15 14 13 45 45 H 1.09002 * 109.46667 * 180.02562 * 16 14 13 46 46 H 1.08997 * 109.47529 * 60.00487 * 16 14 13 47 47 H 0.96999 * 119.99938 * 359.97438 * 17 16 14 48 48 H 0.97000 * 120.00681 * 179.97438 * 23 22 20 49 49 H 1.10258 * 108.68338 * 74.84001 * 28 2 1 50 50 H 1.10271 * 108.63873 * 319.99957 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5492 0.0000 0.0000 3 6 1.9891 1.4666 0.0000 4 6 1.9994 -0.6986 1.2718 5 6 3.4640 -1.0931 1.2716 6 1 3.6159 -1.7790 2.1360 7 7 4.3375 0.0546 1.5027 8 6 4.4922 0.5435 2.7491 9 8 3.9065 0.0301 3.6788 10 6 5.3929 1.7279 2.9874 11 6 5.3918 2.0647 4.4203 12 7 5.3904 2.3249 5.5261 13 6 3.8565 -1.8606 0.0234 14 6 3.4416 -1.1838 -1.2719 15 6 4.3998 -0.0413 -1.6199 16 6 3.5737 -2.2353 -2.4019 17 7 4.9627 -2.6938 -2.4824 18 6 5.3160 -3.6154 -3.4001 19 8 4.4814 -4.0664 -4.1622 20 6 6.7041 -4.0731 -3.4810 21 1 7.4212 -3.7564 -2.7382 22 6 7.1020 -4.9219 -4.5215 23 7 6.2725 -5.1988 -5.4923 24 14 8.8190 -5.6580 -4.5215 25 1 8.8271 -6.8950 -3.6999 26 1 9.7776 -4.6782 -3.9503 27 1 9.2169 -5.9860 -5.9140 28 6 2.0019 -0.7083 -1.2619 29 1 -0.3633 0.5327 0.8789 30 1 -0.3634 0.4948 -0.9007 31 1 -0.3633 -1.0275 0.0219 32 1 3.0759 1.5200 0.0642 33 1 1.6555 1.9460 -0.9204 34 1 1.5490 1.9779 0.8561 35 1 1.3850 -1.5983 1.4205 36 1 1.8060 -0.0372 2.1287 37 1 4.8061 0.4649 0.7590 38 1 6.4074 1.4819 2.6732 39 1 5.0313 2.5808 2.4131 40 1 3.4062 -2.8629 0.0616 41 1 4.9468 -2.0028 0.0175 42 1 4.1202 0.3868 -2.5826 43 1 4.3428 0.7280 -0.8499 44 1 5.4184 -0.4254 -1.6752 45 1 3.2841 -1.7860 -3.3519 46 1 2.9231 -3.0831 -2.1873 47 1 5.6283 -2.3335 -1.8758 48 1 6.5482 -5.7863 -6.2132 49 1 1.8467 -0.0340 -2.1204 50 1 1.3433 -1.5756 -1.4348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005914910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:19 Heat of formation + Delta-G solvation = -72.749814 kcal Electronic energy + Delta-G solvation = -30189.685435 eV Core-core repulsion = 26215.910127 eV Total energy + Delta-G solvation = -3973.775308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.91072 -39.33873 -37.30759 -36.68295 -35.21658 -34.85182 -32.58737 -32.08095 -31.38481 -29.96521 -27.75866 -26.80031 -26.71453 -26.49957 -24.59549 -22.68991 -21.06963 -20.17832 -19.24997 -18.62736 -17.70227 -17.62542 -17.24482 -16.17979 -15.64220 -15.44614 -15.27318 -14.75769 -14.54748 -14.47506 -14.22599 -13.98573 -13.78451 -13.61633 -13.35165 -13.23510 -12.95891 -12.88409 -12.73711 -12.48420 -12.37129 -12.17414 -12.09666 -11.83526 -11.64688 -11.54588 -11.39039 -11.33926 -11.21433 -11.07299 -10.90994 -10.68754 -10.50795 -10.36514 -10.35837 -10.17087 -10.13128 -9.82102 -9.19514 -8.86614 -7.63388 -7.50871 -6.23908 -4.65541 2.18256 2.20912 2.50087 3.03235 3.12378 3.19207 3.21088 3.55356 4.07968 4.35241 4.43630 4.51152 4.56011 4.58816 4.70597 4.73195 4.79389 4.90868 4.97243 5.07322 5.12215 5.20391 5.35160 5.40567 5.51252 5.54592 5.63509 5.67361 5.72975 5.76537 5.79332 5.84031 5.88386 5.91792 5.96596 6.04770 6.18018 6.20909 6.23703 6.33233 6.37579 6.42733 6.55467 6.57754 7.10740 7.27612 7.40712 7.85972 7.90306 8.08030 8.30524 9.00447 9.51290 10.57756 10.76305 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012402 B = 0.002984 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.110533 B = 9380.939433 C =11050.659107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C -0.140 4.140 4 C -0.114 4.114 5 C 0.154 3.846 6 H 0.079 0.921 7 N -0.712 5.712 8 C 0.518 3.482 9 O -0.531 6.531 10 C -0.048 4.048 11 C 0.220 3.780 12 N -0.417 5.417 13 C -0.112 4.112 14 C -0.061 4.061 15 C -0.144 4.144 16 C 0.139 3.861 17 N -0.765 5.765 18 C 0.557 3.443 19 O -0.584 6.584 20 C -0.548 4.548 21 H 0.066 0.934 22 C 0.090 3.910 23 N -0.770 5.770 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.266 1.266 27 H -0.280 1.280 28 C -0.095 4.095 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.402 0.598 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.047 0.953 46 H 0.046 0.954 47 H 0.378 0.622 48 H 0.269 0.731 49 H 0.063 0.937 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 15.182 10.703 19.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.052 4.052 3 C -0.197 4.197 4 C -0.152 4.152 5 C 0.050 3.950 6 H 0.097 0.903 7 N -0.366 5.366 8 C 0.301 3.699 9 O -0.407 6.407 10 C -0.090 4.090 11 C -0.099 4.099 12 N -0.093 5.093 13 C -0.150 4.150 14 C -0.062 4.062 15 C -0.201 4.201 16 C 0.014 3.986 17 N -0.422 5.422 18 C 0.360 3.640 19 O -0.467 6.467 20 C -0.585 4.585 21 H 0.085 0.915 22 C -0.130 4.130 23 N -0.399 5.399 24 Si 0.731 3.269 25 H -0.197 1.197 26 H -0.190 1.190 27 H -0.206 1.206 28 C -0.132 4.132 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.239 0.761 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.211 0.789 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.693 14.733 12.270 20.000 hybrid contribution 1.314 -0.155 -0.660 1.479 sum -4.379 14.578 11.609 19.143 Atomic orbital electron populations 1.22437 0.94961 1.01703 1.01391 1.20223 0.95148 0.95161 0.94621 1.22041 1.01367 0.95063 1.01243 1.21610 0.95015 1.01383 0.97227 1.20549 0.89168 0.86458 0.98833 0.90342 1.46158 1.47944 1.33975 1.08554 1.19971 0.82161 0.84391 0.83356 1.90796 1.47791 1.59795 1.42304 1.19195 1.04063 0.99669 0.86116 1.28050 0.93823 0.93781 0.94287 1.81210 1.07782 1.08406 1.11880 1.21518 1.02614 0.99140 0.91764 1.20496 0.95001 0.95757 0.94920 1.22120 0.99696 0.97199 1.01077 1.21487 0.86434 0.94745 0.95935 1.46174 1.07792 1.47423 1.40780 1.18182 0.89529 0.77654 0.78595 1.90594 1.53006 1.59364 1.43732 1.20852 0.94070 1.31285 1.12335 0.91540 1.25678 0.98150 0.94885 0.94297 1.69978 1.34875 1.27619 1.07394 0.86427 0.82759 0.79907 0.77857 1.19662 1.19022 1.20579 1.21231 0.94946 1.00515 0.96555 0.93019 0.92740 0.92684 0.92385 0.92774 0.93218 0.91083 0.91486 0.76062 0.84200 0.84391 0.89885 0.90714 0.92089 0.93207 0.91807 0.93443 0.93564 0.78940 0.92057 0.91864 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 7.94 38.17 0.30 -0.90 16 2 C -0.05 -0.43 0.74 -154.68 -0.11 -0.54 16 3 C -0.14 -1.00 7.94 37.22 0.30 -0.70 16 4 C -0.11 -1.03 4.20 -27.94 -0.12 -1.14 16 5 C 0.15 1.38 2.31 -69.50 -0.16 1.22 16 6 H 0.08 0.84 7.65 -50.55 -0.39 0.45 16 7 N -0.71 -4.83 3.94 -54.51 -0.21 -5.04 16 8 C 0.52 4.11 7.58 -10.99 -0.08 4.03 16 9 O -0.53 -6.83 15.22 5.56 0.08 -6.75 16 10 C -0.05 -0.20 6.19 -30.67 -0.19 -0.39 16 11 C 0.22 1.98 14.67 -20.76 -0.30 1.68 16 12 N -0.42 -5.24 18.54 42.15 0.78 -4.46 16 13 C -0.11 -1.15 3.89 -27.94 -0.11 -1.26 16 14 C -0.06 -0.66 0.56 -154.68 -0.09 -0.75 16 15 C -0.14 -1.34 7.43 37.22 0.28 -1.06 16 16 C 0.14 2.32 4.13 -3.03 -0.01 2.31 16 17 N -0.77 -15.19 4.89 -60.69 -0.30 -15.48 16 18 C 0.56 15.00 7.72 -12.99 -0.10 14.90 16 19 O -0.58 -18.34 15.11 5.20 0.08 -18.27 16 20 C -0.55 -14.82 9.53 -35.63 -0.34 -15.16 16 21 H 0.07 1.63 7.86 -52.49 -0.41 1.22 16 22 C 0.09 2.43 5.48 -17.37 -0.10 2.34 16 23 N -0.77 -22.60 11.91 55.55 0.66 -21.94 16 24 Si 0.91 19.57 29.56 -169.99 -5.03 14.54 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 26 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 27 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 28 C -0.09 -0.93 3.42 -28.13 -0.10 -1.02 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.46 7.99 -51.93 -0.41 0.05 16 32 H 0.06 0.35 4.35 -51.93 -0.23 0.13 16 33 H 0.05 0.38 8.04 -51.92 -0.42 -0.03 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.66 7.96 -51.39 -0.41 0.26 16 36 H 0.07 0.68 7.54 -51.39 -0.39 0.29 16 37 H 0.40 1.90 5.50 -40.82 -0.22 1.68 16 38 H 0.14 0.12 8.14 -51.92 -0.42 -0.30 16 39 H 0.14 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.08 0.97 7.96 -51.39 -0.41 0.56 16 41 H 0.07 0.78 7.02 -51.38 -0.36 0.42 16 42 H 0.06 0.63 8.11 -51.92 -0.42 0.21 16 43 H 0.05 0.32 3.58 -51.93 -0.19 0.13 16 44 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.05 0.85 7.99 -51.93 -0.41 0.44 16 47 H 0.38 6.41 5.96 -40.82 -0.24 6.17 16 48 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 49 H 0.06 0.62 7.89 -51.21 -0.40 0.22 16 50 H 0.06 0.69 7.59 -51.20 -0.39 0.30 16 LS Contribution 390.89 15.07 5.89 5.89 Total: -1.00 -37.95 390.89 -6.69 -44.64 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.72 Total: 3.31 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -0.93 Total: 3.55 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.93 Total: -46.93 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: 0.16 Total: -25.01 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.95 -6.69 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005914910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.109 kcal (2) G-P(sol) polarization free energy of solvation -37.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds