Wall clock time and date at job start Tue Mar 31 2020 19:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54924 * 1 3 3 C 1.53117 * 106.69578 * 2 1 4 4 C 1.51927 * 107.23406 * 118.77822 * 2 1 3 5 5 C 1.51684 * 113.92418 * 165.55258 * 4 2 1 6 6 H 1.11389 * 106.96159 * 192.10127 * 5 4 2 7 7 N 1.46065 * 111.90302 * 76.15530 * 5 4 2 8 8 C 1.34777 * 119.99801 * 77.77413 * 7 5 4 9 9 O 1.21282 * 119.99730 * 0.02562 * 8 7 5 10 10 C 1.50698 * 119.99971 * 180.02562 * 8 7 5 11 11 C 1.47197 * 109.47181 * 180.02562 * 10 8 7 12 12 N 7.12024 * 122.64763 * 67.18264 * 2 1 3 13 13 C 1.51690 * 112.43111 * 309.21959 * 5 4 2 14 14 C 1.51923 * 113.91954 * 50.79331 * 13 5 4 15 15 C 1.53116 * 110.81508 * 78.34312 * 14 13 5 16 16 C 1.54927 * 107.22989 * 194.42392 * 14 13 5 17 17 N 1.46496 * 109.47312 * 299.99925 * 16 14 13 18 18 C 1.34776 * 119.99968 * 180.02562 * 17 16 14 19 19 O 1.21684 * 120.00304 * 0.02562 * 18 17 16 20 20 C 1.46375 * 119.99914 * 179.97438 * 18 17 16 21 21 H 1.07998 * 120.00241 * 6.74858 * 20 18 17 22 22 C 1.40048 * 119.99847 * 186.74781 * 20 18 17 23 23 N 1.30665 * 120.00331 * 6.79333 * 22 20 18 24 24 Si 1.86809 * 120.00005 * 186.79144 * 22 20 18 25 25 H 1.48502 * 109.46851 * 84.98855 * 24 22 20 26 26 H 1.48502 * 109.46677 * 324.99249 * 24 22 20 27 27 H 1.48496 * 109.47064 * 204.99115 * 24 22 20 28 28 C 1.51619 * 107.37205 * 240.69518 * 2 1 3 29 29 H 1.09003 * 109.46962 * 301.22135 * 1 2 3 30 30 H 1.09001 * 109.47271 * 61.22076 * 1 2 3 31 31 H 1.09005 * 109.46899 * 181.22335 * 1 2 3 32 32 H 1.09000 * 109.47358 * 176.41901 * 3 2 1 33 33 H 1.09009 * 109.46680 * 296.41891 * 3 2 1 34 34 H 1.08996 * 109.46860 * 56.41259 * 3 2 1 35 35 H 1.09955 * 108.89887 * 43.56885 * 4 2 1 36 36 H 1.09955 * 108.88575 * 287.49862 * 4 2 1 37 37 H 0.97001 * 119.99892 * 257.78044 * 7 5 4 38 38 H 1.09009 * 109.46905 * 299.99784 * 10 8 7 39 39 H 1.08995 * 109.47332 * 60.00377 * 10 8 7 40 40 H 1.09949 * 109.07199 * 288.90457 * 13 5 4 41 41 H 1.09957 * 109.04971 * 172.65504 * 13 5 4 42 42 H 1.09008 * 109.46868 * 176.42062 * 15 14 13 43 43 H 1.09004 * 109.46900 * 296.41336 * 15 14 13 44 44 H 1.08997 * 109.47605 * 56.41716 * 15 14 13 45 45 H 1.09002 * 109.46667 * 180.02562 * 16 14 13 46 46 H 1.08997 * 109.47529 * 60.00487 * 16 14 13 47 47 H 0.96999 * 119.99938 * 359.97438 * 17 16 14 48 48 H 0.97000 * 120.00681 * 179.97438 * 23 22 20 49 49 H 1.10258 * 108.68338 * 74.84001 * 28 2 1 50 50 H 1.10271 * 108.63873 * 319.99957 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5492 0.0000 0.0000 3 6 1.9891 1.4666 0.0000 4 6 1.9994 -0.6986 1.2718 5 6 3.4640 -1.0931 1.2716 6 1 3.6159 -1.7790 2.1360 7 7 4.3375 0.0546 1.5027 8 6 4.4922 0.5435 2.7491 9 8 3.9065 0.0301 3.6788 10 6 5.3929 1.7279 2.9874 11 6 5.3918 2.0647 4.4203 12 7 5.3904 2.3249 5.5261 13 6 3.8565 -1.8606 0.0234 14 6 3.4416 -1.1838 -1.2719 15 6 4.3998 -0.0413 -1.6199 16 6 3.5737 -2.2353 -2.4019 17 7 4.9627 -2.6938 -2.4824 18 6 5.3160 -3.6154 -3.4001 19 8 4.4814 -4.0664 -4.1622 20 6 6.7041 -4.0731 -3.4810 21 1 7.4212 -3.7564 -2.7382 22 6 7.1020 -4.9219 -4.5215 23 7 6.2725 -5.1988 -5.4923 24 14 8.8190 -5.6580 -4.5215 25 1 8.8271 -6.8950 -3.6999 26 1 9.7776 -4.6782 -3.9503 27 1 9.2169 -5.9860 -5.9140 28 6 2.0019 -0.7083 -1.2619 29 1 -0.3633 0.5327 0.8789 30 1 -0.3634 0.4948 -0.9007 31 1 -0.3633 -1.0275 0.0219 32 1 3.0759 1.5200 0.0642 33 1 1.6555 1.9460 -0.9204 34 1 1.5490 1.9779 0.8561 35 1 1.3850 -1.5983 1.4205 36 1 1.8060 -0.0372 2.1287 37 1 4.8061 0.4649 0.7590 38 1 6.4074 1.4819 2.6732 39 1 5.0313 2.5808 2.4131 40 1 3.4062 -2.8629 0.0616 41 1 4.9468 -2.0028 0.0175 42 1 4.1202 0.3868 -2.5826 43 1 4.3428 0.7280 -0.8499 44 1 5.4184 -0.4254 -1.6752 45 1 3.2841 -1.7860 -3.3519 46 1 2.9231 -3.0831 -2.1873 47 1 5.6283 -2.3335 -1.8758 48 1 6.5482 -5.7863 -6.2132 49 1 1.8467 -0.0340 -2.1204 50 1 1.3433 -1.5756 -1.4348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005914910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:18 Heat of formation + Delta-G solvation = -100.213732 kcal Electronic energy + Delta-G solvation = -30190.876360 eV Core-core repulsion = 26215.910127 eV Total energy + Delta-G solvation = -3974.966233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.71158 -40.21093 -39.06902 -37.44864 -36.44516 -35.67493 -34.59305 -33.19736 -32.58511 -30.58460 -28.85066 -28.33565 -27.47013 -27.28637 -26.10440 -23.48227 -21.94582 -21.68266 -20.49714 -19.45139 -19.04211 -18.42852 -18.13117 -17.40263 -16.77561 -16.47960 -16.19121 -16.06227 -15.86657 -15.41645 -15.16108 -15.01341 -14.97925 -14.61113 -14.32046 -14.21561 -14.06637 -13.85205 -13.70317 -13.57491 -13.42680 -13.05839 -12.99200 -12.89562 -12.69096 -12.60928 -12.50257 -12.48392 -12.37283 -12.34036 -12.16317 -12.00527 -11.86427 -11.51539 -11.22723 -11.09486 -10.89948 -10.88139 -10.77226 -9.91591 -9.79819 -9.36634 -8.27340 -6.78413 1.43246 1.45295 1.53951 1.58964 1.64456 1.85230 2.27760 2.41807 2.52930 3.05153 3.21042 3.57977 3.65192 3.73100 3.74770 3.86419 4.06619 4.13057 4.15193 4.27772 4.39742 4.52759 4.54749 4.58092 4.62222 4.68243 4.75834 4.87267 4.92197 4.95258 4.96580 5.01125 5.08055 5.10343 5.18543 5.20457 5.21909 5.26356 5.36993 5.43074 5.48551 5.51064 5.60158 5.65687 5.71674 5.94541 6.32863 6.36874 6.51595 6.68454 6.92598 7.29381 7.65103 8.56158 8.73160 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012402 B = 0.002984 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.110533 B = 9380.939433 C =11050.659107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C -0.139 4.139 4 C -0.109 4.109 5 C 0.166 3.834 6 H 0.061 0.939 7 N -0.699 5.699 8 C 0.519 3.481 9 O -0.585 6.585 10 C -0.039 4.039 11 C 0.243 3.757 12 N -0.492 5.492 13 C -0.107 4.107 14 C -0.040 4.040 15 C -0.143 4.143 16 C 0.140 3.860 17 N -0.745 5.745 18 C 0.540 3.460 19 O -0.640 6.640 20 C -0.573 4.573 21 H 0.090 0.910 22 C 0.030 3.970 23 N -0.826 5.826 24 Si 0.994 3.006 25 H -0.266 1.266 26 H -0.244 1.244 27 H -0.277 1.277 28 C -0.092 4.092 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.416 0.584 38 H 0.185 0.815 39 H 0.188 0.812 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.026 0.974 46 H 0.021 0.979 47 H 0.396 0.604 48 H 0.273 0.727 49 H 0.068 0.932 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 17.411 11.158 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.045 4.045 3 C -0.196 4.196 4 C -0.148 4.148 5 C 0.061 3.939 6 H 0.079 0.921 7 N -0.354 5.354 8 C 0.305 3.695 9 O -0.465 6.465 10 C -0.081 4.081 11 C -0.075 4.075 12 N -0.169 5.169 13 C -0.145 4.145 14 C -0.041 4.041 15 C -0.200 4.200 16 C 0.015 3.985 17 N -0.400 5.400 18 C 0.343 3.657 19 O -0.528 6.528 20 C -0.610 4.610 21 H 0.108 0.892 22 C -0.185 4.185 23 N -0.456 5.456 24 Si 0.814 3.186 25 H -0.191 1.191 26 H -0.167 1.167 27 H -0.202 1.202 28 C -0.130 4.130 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.256 0.744 38 H 0.202 0.798 39 H 0.205 0.795 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.045 0.955 46 H 0.039 0.961 47 H 0.231 0.769 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.399 17.029 12.752 21.544 hybrid contribution 0.506 -0.873 -0.828 1.305 sum -2.893 16.157 11.924 20.288 Atomic orbital electron populations 1.22435 0.94811 1.01376 1.01881 1.20149 0.95272 0.96052 0.93022 1.22035 1.02294 0.93444 1.01797 1.21561 0.94859 1.00961 0.97397 1.20233 0.89596 0.87027 0.97078 0.92087 1.45953 1.47343 1.33067 1.09010 1.20575 0.81683 0.84738 0.82531 1.90799 1.50097 1.61697 1.43895 1.19583 1.05646 0.99354 0.83476 1.28953 0.91607 0.91765 0.95144 1.81231 1.10343 1.10973 1.14347 1.21425 1.02576 0.98444 0.92008 1.20386 0.96518 0.94540 0.92616 1.22125 0.98619 0.97147 1.02122 1.21615 0.84014 0.95431 0.97438 1.45746 1.09544 1.45541 1.39212 1.18582 0.89624 0.78407 0.79057 1.90550 1.54396 1.61574 1.46248 1.21413 0.94626 1.31796 1.13130 0.89183 1.26929 1.03315 0.94882 0.93365 1.70154 1.37992 1.28821 1.08604 0.85089 0.76360 0.79106 0.78078 1.19131 1.16729 1.20180 1.21215 0.93746 1.00180 0.97834 0.92438 0.92294 0.93534 0.90979 0.92258 0.92738 0.92079 0.91951 0.74390 0.79767 0.79537 0.91910 0.90332 0.92688 0.89447 0.92051 0.95542 0.96068 0.76856 0.91712 0.91369 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 7.94 72.64 0.58 -1.67 16 2 C -0.04 -0.67 0.74 -52.29 -0.04 -0.70 16 3 C -0.14 -1.48 7.94 72.02 0.57 -0.91 16 4 C -0.11 -1.85 4.20 29.81 0.13 -1.72 16 5 C 0.17 2.72 2.31 44.21 0.10 2.83 16 6 H 0.06 1.28 7.65 -1.09 -0.01 1.27 16 7 N -0.70 -7.04 3.94 -444.75 -1.75 -8.79 16 8 C 0.52 6.55 7.58 87.66 0.66 7.21 16 9 O -0.59 -14.30 15.22 -3.04 -0.05 -14.35 16 10 C -0.04 -0.13 6.19 28.04 0.17 0.05 16 11 C 0.24 3.82 14.67 89.44 1.31 5.13 16 12 N -0.49 -12.09 18.54 20.00 0.37 -11.71 16 13 C -0.11 -2.08 3.89 29.81 0.12 -1.96 16 14 C -0.04 -0.83 0.56 -52.29 -0.03 -0.86 16 15 C -0.14 -2.25 7.43 72.02 0.54 -1.71 16 16 C 0.14 4.82 4.13 87.04 0.36 5.18 16 17 N -0.74 -29.84 4.89 -464.15 -2.27 -32.11 16 18 C 0.54 29.84 7.72 86.36 0.67 30.50 16 19 O -0.64 -42.09 15.11 -4.30 -0.06 -42.16 16 20 C -0.57 -30.95 9.53 24.83 0.24 -30.71 16 21 H 0.09 4.27 7.86 -2.91 -0.02 4.24 16 22 C 0.03 1.62 5.48 85.31 0.47 2.09 16 23 N -0.83 -49.80 11.91 21.83 0.26 -49.54 16 24 Si 0.99 39.61 29.56 68.60 2.03 41.64 16 25 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 26 H -0.24 -8.80 7.11 99.48 0.71 -8.09 16 27 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 28 C -0.09 -1.72 3.42 29.69 0.10 -1.62 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.78 7.99 -2.38 -0.02 0.76 16 32 H 0.07 0.52 4.35 -2.39 -0.01 0.51 16 33 H 0.06 0.62 8.04 -2.38 -0.02 0.60 16 34 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 1.15 7.96 -1.88 -0.01 1.14 16 36 H 0.06 1.17 7.54 -1.88 -0.01 1.15 16 37 H 0.42 1.82 5.50 -92.71 -0.51 1.31 16 38 H 0.19 -0.88 8.14 -2.38 -0.02 -0.90 16 39 H 0.19 -1.07 8.14 -2.39 -0.02 -1.09 16 40 H 0.06 1.51 7.96 -1.88 -0.01 1.49 16 41 H 0.08 1.48 7.02 -1.88 -0.01 1.47 16 42 H 0.05 0.99 8.11 -2.38 -0.02 0.97 16 43 H 0.09 0.70 3.58 -2.38 -0.01 0.69 16 44 H 0.06 1.03 6.56 -2.39 -0.02 1.02 16 45 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.02 0.83 7.99 -2.39 -0.02 0.81 16 47 H 0.40 12.95 5.96 -92.71 -0.55 12.40 16 48 H 0.27 14.98 8.29 -92.71 -0.77 14.21 16 49 H 0.07 1.25 7.89 -1.71 -0.01 1.23 16 50 H 0.05 1.04 7.59 -1.71 -0.01 1.03 16 Total: -1.00 -90.57 390.89 4.41 -86.16 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.05 Total: 19.74 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 5.94 Total: 11.11 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -3.39 Total: -102.15 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -0.11 Total: -56.51 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -90.57 4.41 -86.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005914910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.049 kcal (2) G-P(sol) polarization free energy of solvation -90.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds