Wall clock time and date at job start Tue Mar 31 2020 19:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53139 * 1 3 3 C 1.54492 * 107.29039 * 2 1 4 4 C 1.52450 * 109.99842 * 116.78812 * 2 1 3 5 5 C 1.52702 * 110.78528 * 72.46494 * 4 2 1 6 6 H 1.08667 * 110.49963 * 300.02525 * 5 4 2 7 7 N 1.46897 * 109.09135 * 180.49116 * 5 4 2 8 8 C 1.34775 * 120.00427 * 86.20786 * 7 5 4 9 9 O 1.21285 * 119.99581 * 0.02562 * 8 7 5 10 10 C 1.50707 * 120.00378 * 180.02562 * 8 7 5 11 11 C 1.47198 * 109.47222 * 179.97438 * 10 8 7 12 12 N 7.57401 * 79.82824 * 116.13234 * 2 1 3 13 13 C 1.52697 * 108.85189 * 61.54677 * 5 4 2 14 14 C 1.52455 * 110.79824 * 298.46306 * 13 5 4 15 15 C 1.53141 * 109.99699 * 287.51753 * 14 13 5 16 16 C 1.54484 * 107.62304 * 170.92484 * 14 13 5 17 17 N 1.46504 * 109.47083 * 58.34577 * 16 14 13 18 18 C 1.34774 * 120.00240 * 179.97438 * 17 16 14 19 19 O 1.21691 * 119.99707 * 0.02562 * 18 17 16 20 20 C 1.46374 * 119.99951 * 179.97438 * 18 17 16 21 21 H 1.07991 * 120.00335 * 0.02562 * 20 18 17 22 22 C 1.40055 * 119.99881 * 180.02562 * 20 18 17 23 23 N 1.30678 * 119.99845 * 359.97438 * 22 20 18 24 24 Si 1.86794 * 120.00205 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47341 * 180.02562 * 24 22 20 26 26 H 1.48510 * 109.46748 * 300.00101 * 24 22 20 27 27 H 1.48498 * 109.47206 * 59.99778 * 24 22 20 28 28 C 1.51731 * 111.11367 * 242.20774 * 2 1 3 29 29 H 1.08996 * 109.47164 * 303.21197 * 1 2 3 30 30 H 1.09005 * 109.46920 * 63.20963 * 1 2 3 31 31 H 1.08999 * 109.47125 * 183.20643 * 1 2 3 32 32 H 1.09003 * 109.47058 * 178.34310 * 3 2 1 33 33 H 1.09001 * 109.47194 * 298.34187 * 3 2 1 34 34 H 1.08996 * 109.47277 * 58.34349 * 3 2 1 35 35 H 1.09300 * 109.42910 * 311.91995 * 4 2 1 36 36 H 1.09303 * 109.43237 * 193.03331 * 4 2 1 37 37 H 0.97002 * 119.99681 * 266.20820 * 7 5 4 38 38 H 1.09003 * 109.46773 * 300.00302 * 10 8 7 39 39 H 1.08995 * 109.46712 * 60.00009 * 10 8 7 40 40 H 1.09307 * 109.26839 * 177.82498 * 13 5 4 41 41 H 1.09305 * 109.28925 * 59.12856 * 13 5 4 42 42 H 1.08994 * 109.46895 * 303.20338 * 15 14 13 43 43 H 1.08992 * 109.47351 * 63.20610 * 15 14 13 44 44 H 1.09000 * 109.46682 * 183.20928 * 15 14 13 45 45 H 1.08994 * 109.47390 * 298.34307 * 16 14 13 46 46 H 1.09000 * 109.47356 * 178.34108 * 16 14 13 47 47 H 0.97005 * 119.99919 * 359.97438 * 17 16 14 48 48 H 0.97001 * 119.99601 * 179.97438 * 23 22 20 49 49 H 1.10265 * 108.56136 * 156.80738 * 28 2 1 50 50 H 1.10237 * 108.63075 * 42.00799 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5314 0.0000 0.0000 3 6 1.9906 1.4751 0.0000 4 6 2.0528 -0.6457 1.2788 5 6 1.8339 -2.1567 1.2512 6 1 0.7757 -2.3863 1.1600 7 7 2.3377 -2.7381 2.5026 8 6 1.5420 -2.7918 3.5891 9 8 0.4098 -2.3604 3.5334 10 6 2.0590 -3.3877 4.8731 11 6 1.0066 -3.3282 5.9005 12 7 0.1938 -3.2835 6.6929 13 6 2.6123 -2.7466 0.0774 14 6 2.1115 -2.1770 -1.2451 15 6 0.7357 -2.7607 -1.5793 16 6 3.0867 -2.6368 -2.3515 17 7 3.1415 -4.1006 -2.3767 18 6 3.9323 -4.7302 -3.2682 19 8 4.6012 -4.0827 -4.0518 20 6 3.9874 -6.1927 -3.2929 21 1 3.3941 -6.7673 -2.5972 22 6 4.8096 -6.8469 -4.2189 23 7 5.5272 -6.1516 -5.0612 24 14 4.8795 -8.7132 -4.2511 25 1 5.8173 -9.1553 -5.3142 26 1 5.3522 -9.2136 -2.9351 27 1 3.5248 -9.2546 -4.5288 28 6 2.0780 -0.6600 -1.2522 29 1 -0.3633 0.5629 0.8598 30 1 -0.3633 0.4632 -0.9174 31 1 -0.3633 -1.0260 0.0575 32 1 3.0794 1.5167 0.0297 33 1 1.6327 1.9670 -0.9045 34 1 1.5836 1.9823 0.8747 35 1 1.5300 -0.2211 2.1397 36 1 3.1208 -0.4374 1.3821 37 1 3.2430 -3.0834 2.5470 38 1 2.3430 -4.4263 4.7031 39 1 2.9285 -2.8240 5.2110 40 1 2.4917 -3.8330 0.0742 41 1 3.6738 -2.5141 0.1948 42 1 0.7992 -3.8484 -1.6054 43 1 0.0175 -2.4568 -0.8179 44 1 0.4114 -2.3922 -2.5525 45 1 4.0810 -2.2395 -2.1477 46 1 2.7397 -2.2696 -3.3174 47 1 2.6085 -4.6167 -1.7518 48 1 6.0969 -6.6047 -5.7023 49 1 3.1007 -0.2871 -1.4276 50 1 1.4807 -0.3251 -2.1161 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005914962.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:23 Heat of formation + Delta-G solvation = -76.580266 kcal Electronic energy + Delta-G solvation = -29856.828585 eV Core-core repulsion = 25882.887176 eV Total energy + Delta-G solvation = -3973.941409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.76790 -39.47059 -37.28727 -36.70004 -35.15984 -35.03663 -32.58092 -31.97918 -31.35753 -29.61189 -27.81249 -26.77595 -26.67094 -26.34846 -24.56900 -22.73092 -20.98458 -20.14695 -19.16640 -18.54691 -17.94047 -17.32656 -17.27284 -16.12778 -15.98244 -15.34162 -15.05958 -14.82869 -14.52256 -14.47897 -14.22332 -14.10508 -13.77324 -13.67924 -13.58264 -13.14603 -13.03097 -12.72634 -12.64702 -12.35469 -12.30271 -12.12739 -12.08586 -11.79783 -11.65549 -11.42543 -11.35567 -11.20591 -11.03782 -10.99243 -10.91233 -10.66159 -10.60035 -10.47532 -10.33382 -10.18288 -10.08339 -9.88774 -9.25251 -8.86071 -7.62531 -7.48428 -6.19815 -4.65460 2.17428 2.19927 2.49867 3.00742 3.13544 3.19030 3.20469 3.55065 4.08571 4.32435 4.46569 4.56774 4.58770 4.64610 4.71305 4.73982 4.82389 4.97052 5.03734 5.12762 5.19901 5.29302 5.34051 5.42794 5.54099 5.59014 5.68192 5.73794 5.78880 5.79789 5.86985 5.89605 5.93969 5.96171 6.01677 6.10682 6.15975 6.28287 6.31503 6.34891 6.40187 6.46312 6.59735 6.61275 7.09720 7.27193 7.41381 7.84253 7.91826 8.10092 8.31402 9.01137 9.53278 10.59271 10.78444 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010444 B = 0.003058 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.318644 B = 9154.314497 C =11238.779255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C -0.145 4.145 4 C -0.115 4.115 5 C 0.148 3.852 6 H 0.094 0.906 7 N -0.721 5.721 8 C 0.518 3.482 9 O -0.530 6.530 10 C -0.047 4.047 11 C 0.219 3.781 12 N -0.417 5.417 13 C -0.113 4.113 14 C -0.056 4.056 15 C -0.145 4.145 16 C 0.142 3.858 17 N -0.765 5.765 18 C 0.555 3.445 19 O -0.582 6.582 20 C -0.547 4.547 21 H 0.065 0.935 22 C 0.088 3.912 23 N -0.769 5.769 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.268 1.268 27 H -0.268 1.268 28 C -0.097 4.097 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.404 0.596 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.048 0.952 47 H 0.378 0.622 48 H 0.268 0.732 49 H 0.063 0.937 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.459 9.113 15.198 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.051 4.051 3 C -0.202 4.202 4 C -0.153 4.153 5 C 0.044 3.956 6 H 0.112 0.888 7 N -0.372 5.372 8 C 0.302 3.698 9 O -0.406 6.406 10 C -0.089 4.089 11 C -0.100 4.100 12 N -0.093 5.093 13 C -0.151 4.151 14 C -0.057 4.057 15 C -0.202 4.202 16 C 0.016 3.984 17 N -0.422 5.422 18 C 0.359 3.641 19 O -0.465 6.465 20 C -0.584 4.584 21 H 0.084 0.916 22 C -0.132 4.132 23 N -0.397 5.397 24 Si 0.731 3.269 25 H -0.206 1.206 26 H -0.193 1.193 27 H -0.193 1.193 28 C -0.135 4.135 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.239 0.761 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.211 0.789 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.848 9.992 15.584 19.414 hybrid contribution 0.669 -1.347 -0.090 1.506 sum -5.179 8.646 15.495 18.484 Atomic orbital electron populations 1.22062 0.94477 1.02225 1.01378 1.20277 0.95632 0.94987 0.94196 1.22292 1.01013 0.95353 1.01558 1.21844 1.01412 0.94548 0.97512 1.21018 0.99924 0.92668 0.81960 0.88778 1.46179 1.17169 1.62447 1.11375 1.20002 0.85899 0.79317 0.84600 1.90802 1.18724 1.47053 1.84048 1.19188 0.94718 1.06404 0.88608 1.28072 0.94129 0.93871 0.93928 1.81210 1.08867 1.07882 1.11338 1.21732 0.99906 1.00878 0.92576 1.20495 0.96276 0.94515 0.94394 1.22066 0.95526 1.01280 1.01309 1.21331 0.96749 0.84134 0.96142 1.46179 1.50947 1.04073 1.40998 1.18181 0.78283 0.88608 0.79068 1.90602 1.46067 1.67880 1.41976 1.20842 1.27923 0.89989 1.19634 0.91630 1.25696 0.93824 0.99567 0.94082 1.70013 1.19277 1.36369 1.14074 0.86466 0.78673 0.83340 0.78433 1.20609 1.19324 1.19321 1.21295 1.01904 0.93477 0.96799 0.92943 0.92714 0.92018 0.92700 0.92617 0.92917 0.91718 0.91690 0.76108 0.84170 0.84347 0.90733 0.91016 0.92091 0.92607 0.92443 0.93535 0.93416 0.78907 0.92096 0.91830 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 7.99 37.23 0.30 -1.06 16 2 C -0.05 -0.46 0.71 -154.58 -0.11 -0.57 16 3 C -0.14 -1.22 8.06 37.94 0.31 -0.91 16 4 C -0.11 -1.03 4.08 -27.17 -0.11 -1.14 16 5 C 0.15 1.34 2.27 -68.02 -0.15 1.19 16 6 H 0.09 1.04 5.55 -52.12 -0.29 0.75 16 7 N -0.72 -4.85 5.06 -53.97 -0.27 -5.12 16 8 C 0.52 4.15 7.79 -10.98 -0.09 4.07 16 9 O -0.53 -6.92 15.67 5.55 0.09 -6.83 16 10 C -0.05 -0.19 6.19 -30.67 -0.19 -0.38 16 11 C 0.22 1.99 14.67 -20.76 -0.30 1.69 16 12 N -0.42 -5.28 18.54 42.15 0.78 -4.49 16 13 C -0.11 -1.17 3.64 -27.17 -0.10 -1.27 16 14 C -0.06 -0.67 0.53 -154.58 -0.08 -0.75 16 15 C -0.14 -1.74 7.84 37.23 0.29 -1.44 16 16 C 0.14 2.45 4.25 -3.26 -0.01 2.43 16 17 N -0.77 -15.62 4.90 -60.93 -0.30 -15.91 16 18 C 0.55 15.10 7.75 -12.99 -0.10 15.00 16 19 O -0.58 -18.37 15.02 5.20 0.08 -18.30 16 20 C -0.55 -14.88 9.54 -35.63 -0.34 -15.22 16 21 H 0.07 1.62 7.85 -52.49 -0.41 1.21 16 22 C 0.09 2.40 5.50 -17.36 -0.10 2.30 16 23 N -0.77 -22.62 11.83 55.55 0.66 -21.97 16 24 Si 0.91 19.60 29.56 -169.99 -5.02 14.57 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 C -0.10 -1.03 3.48 -28.01 -0.10 -1.12 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.49 8.07 -51.93 -0.42 0.07 16 31 H 0.06 0.62 4.66 -51.93 -0.24 0.38 16 32 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.64 8.12 -51.76 -0.42 0.22 16 36 H 0.06 0.55 8.10 -51.76 -0.42 0.13 16 37 H 0.40 1.57 8.59 -40.82 -0.35 1.22 16 38 H 0.14 0.12 8.14 -51.93 -0.42 -0.30 16 39 H 0.14 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.07 0.82 6.88 -51.76 -0.36 0.46 16 41 H 0.07 0.75 8.11 -51.76 -0.42 0.33 16 42 H 0.06 0.79 6.71 -51.93 -0.35 0.44 16 43 H 0.06 0.60 4.69 -51.93 -0.24 0.35 16 44 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 45 H 0.05 0.86 8.05 -51.93 -0.42 0.45 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.38 6.74 5.95 -40.82 -0.24 6.50 16 48 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 49 H 0.06 0.70 7.60 -51.21 -0.39 0.31 16 50 H 0.06 0.70 7.92 -51.22 -0.41 0.29 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -38.30 396.36 -6.79 -45.10 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.89 Total: 4.18 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.89 Total: 2.79 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.87 Total: -47.49 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: 0.17 Total: -25.13 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.30 -6.79 -45.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005914962.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.482 kcal (2) G-P(sol) polarization free energy of solvation -38.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds