Wall clock time and date at job start Tue Mar 31 2020 19:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53139 * 1 3 3 C 1.54492 * 107.29039 * 2 1 4 4 C 1.52450 * 109.99842 * 116.78812 * 2 1 3 5 5 C 1.52702 * 110.78528 * 72.46494 * 4 2 1 6 6 H 1.08667 * 110.49963 * 300.02525 * 5 4 2 7 7 N 1.46897 * 109.09135 * 180.49116 * 5 4 2 8 8 C 1.34775 * 120.00427 * 86.20786 * 7 5 4 9 9 O 1.21285 * 119.99581 * 0.02562 * 8 7 5 10 10 C 1.50707 * 120.00378 * 180.02562 * 8 7 5 11 11 C 1.47198 * 109.47222 * 179.97438 * 10 8 7 12 12 N 7.57401 * 79.82824 * 116.13234 * 2 1 3 13 13 C 1.52697 * 108.85189 * 61.54677 * 5 4 2 14 14 C 1.52455 * 110.79824 * 298.46306 * 13 5 4 15 15 C 1.53141 * 109.99699 * 287.51753 * 14 13 5 16 16 C 1.54484 * 107.62304 * 170.92484 * 14 13 5 17 17 N 1.46504 * 109.47083 * 58.34577 * 16 14 13 18 18 C 1.34774 * 120.00240 * 179.97438 * 17 16 14 19 19 O 1.21691 * 119.99707 * 0.02562 * 18 17 16 20 20 C 1.46374 * 119.99951 * 179.97438 * 18 17 16 21 21 H 1.07991 * 120.00335 * 0.02562 * 20 18 17 22 22 C 1.40055 * 119.99881 * 180.02562 * 20 18 17 23 23 N 1.30678 * 119.99845 * 359.97438 * 22 20 18 24 24 Si 1.86794 * 120.00205 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47341 * 180.02562 * 24 22 20 26 26 H 1.48510 * 109.46748 * 300.00101 * 24 22 20 27 27 H 1.48498 * 109.47206 * 59.99778 * 24 22 20 28 28 C 1.51731 * 111.11367 * 242.20774 * 2 1 3 29 29 H 1.08996 * 109.47164 * 303.21197 * 1 2 3 30 30 H 1.09005 * 109.46920 * 63.20963 * 1 2 3 31 31 H 1.08999 * 109.47125 * 183.20643 * 1 2 3 32 32 H 1.09003 * 109.47058 * 178.34310 * 3 2 1 33 33 H 1.09001 * 109.47194 * 298.34187 * 3 2 1 34 34 H 1.08996 * 109.47277 * 58.34349 * 3 2 1 35 35 H 1.09300 * 109.42910 * 311.91995 * 4 2 1 36 36 H 1.09303 * 109.43237 * 193.03331 * 4 2 1 37 37 H 0.97002 * 119.99681 * 266.20820 * 7 5 4 38 38 H 1.09003 * 109.46773 * 300.00302 * 10 8 7 39 39 H 1.08995 * 109.46712 * 60.00009 * 10 8 7 40 40 H 1.09307 * 109.26839 * 177.82498 * 13 5 4 41 41 H 1.09305 * 109.28925 * 59.12856 * 13 5 4 42 42 H 1.08994 * 109.46895 * 303.20338 * 15 14 13 43 43 H 1.08992 * 109.47351 * 63.20610 * 15 14 13 44 44 H 1.09000 * 109.46682 * 183.20928 * 15 14 13 45 45 H 1.08994 * 109.47390 * 298.34307 * 16 14 13 46 46 H 1.09000 * 109.47356 * 178.34108 * 16 14 13 47 47 H 0.97005 * 119.99919 * 359.97438 * 17 16 14 48 48 H 0.97001 * 119.99601 * 179.97438 * 23 22 20 49 49 H 1.10265 * 108.56136 * 156.80738 * 28 2 1 50 50 H 1.10237 * 108.63075 * 42.00799 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5314 0.0000 0.0000 3 6 1.9906 1.4751 0.0000 4 6 2.0528 -0.6457 1.2788 5 6 1.8339 -2.1567 1.2512 6 1 0.7757 -2.3863 1.1600 7 7 2.3377 -2.7381 2.5026 8 6 1.5420 -2.7918 3.5891 9 8 0.4098 -2.3604 3.5334 10 6 2.0590 -3.3877 4.8731 11 6 1.0066 -3.3282 5.9005 12 7 0.1938 -3.2835 6.6929 13 6 2.6123 -2.7466 0.0774 14 6 2.1115 -2.1770 -1.2451 15 6 0.7357 -2.7607 -1.5793 16 6 3.0867 -2.6368 -2.3515 17 7 3.1415 -4.1006 -2.3767 18 6 3.9323 -4.7302 -3.2682 19 8 4.6012 -4.0827 -4.0518 20 6 3.9874 -6.1927 -3.2929 21 1 3.3941 -6.7673 -2.5972 22 6 4.8096 -6.8469 -4.2189 23 7 5.5272 -6.1516 -5.0612 24 14 4.8795 -8.7132 -4.2511 25 1 5.8173 -9.1553 -5.3142 26 1 5.3522 -9.2136 -2.9351 27 1 3.5248 -9.2546 -4.5288 28 6 2.0780 -0.6600 -1.2522 29 1 -0.3633 0.5629 0.8598 30 1 -0.3633 0.4632 -0.9174 31 1 -0.3633 -1.0260 0.0575 32 1 3.0794 1.5167 0.0297 33 1 1.6327 1.9670 -0.9045 34 1 1.5836 1.9823 0.8747 35 1 1.5300 -0.2211 2.1397 36 1 3.1208 -0.4374 1.3821 37 1 3.2430 -3.0834 2.5470 38 1 2.3430 -4.4263 4.7031 39 1 2.9285 -2.8240 5.2110 40 1 2.4917 -3.8330 0.0742 41 1 3.6738 -2.5141 0.1948 42 1 0.7992 -3.8484 -1.6054 43 1 0.0175 -2.4568 -0.8179 44 1 0.4114 -2.3922 -2.5525 45 1 4.0810 -2.2395 -2.1477 46 1 2.7397 -2.2696 -3.3174 47 1 2.6085 -4.6167 -1.7518 48 1 6.0969 -6.6047 -5.7023 49 1 3.1007 -0.2871 -1.4276 50 1 1.4807 -0.3251 -2.1161 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005914962.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:22 Heat of formation + Delta-G solvation = -104.730013 kcal Electronic energy + Delta-G solvation = -29858.049249 eV Core-core repulsion = 25882.887176 eV Total energy + Delta-G solvation = -3975.162074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.59326 -40.32905 -39.09202 -37.47438 -36.43584 -35.84808 -34.59069 -33.23401 -32.43123 -30.28687 -28.90430 -28.48678 -27.49516 -27.19353 -26.11592 -23.51800 -21.90296 -21.62625 -20.45305 -19.42582 -19.02668 -18.60249 -17.95084 -17.43897 -16.79716 -16.67029 -16.12026 -15.93336 -15.86299 -15.52984 -15.35842 -15.09738 -14.82688 -14.66474 -14.51822 -14.31369 -14.21518 -13.81296 -13.73921 -13.45171 -13.33712 -13.08141 -12.99973 -12.83921 -12.67742 -12.58288 -12.57623 -12.54393 -12.46836 -12.26165 -12.04429 -11.90168 -11.84986 -11.56091 -11.48750 -11.09694 -10.99837 -10.87652 -10.79555 -9.96027 -9.80396 -9.36734 -8.24057 -6.79579 1.43579 1.46504 1.52799 1.57945 1.63585 1.83695 2.28169 2.39884 2.53358 3.04294 3.19958 3.56264 3.67422 3.72325 3.76599 3.96556 4.07072 4.09537 4.18618 4.28453 4.41194 4.47750 4.53921 4.55668 4.57207 4.70818 4.74935 4.85229 4.89128 4.94363 4.95183 4.98881 5.05469 5.11303 5.12138 5.14421 5.19809 5.24337 5.36519 5.41818 5.46027 5.50905 5.57177 5.61499 5.62254 5.94030 6.31245 6.36501 6.51943 6.68558 6.92367 7.30177 7.63683 8.56301 8.73867 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010444 B = 0.003058 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.318644 B = 9154.314497 C =11238.779255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C -0.143 4.143 4 C -0.109 4.109 5 C 0.156 3.844 6 H 0.077 0.923 7 N -0.707 5.707 8 C 0.518 3.482 9 O -0.586 6.586 10 C -0.036 4.036 11 C 0.242 3.758 12 N -0.492 5.492 13 C -0.108 4.108 14 C -0.039 4.039 15 C -0.143 4.143 16 C 0.144 3.856 17 N -0.747 5.747 18 C 0.539 3.461 19 O -0.636 6.636 20 C -0.572 4.572 21 H 0.088 0.912 22 C 0.029 3.971 23 N -0.824 5.824 24 Si 0.994 3.006 25 H -0.278 1.278 26 H -0.251 1.251 27 H -0.257 1.257 28 C -0.093 4.093 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.422 0.578 38 H 0.184 0.816 39 H 0.187 0.813 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.033 0.967 46 H 0.023 0.977 47 H 0.394 0.606 48 H 0.273 0.727 49 H 0.060 0.940 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.883 7.872 16.930 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.047 4.047 3 C -0.200 4.200 4 C -0.148 4.148 5 C 0.052 3.948 6 H 0.095 0.905 7 N -0.359 5.359 8 C 0.304 3.696 9 O -0.466 6.466 10 C -0.078 4.078 11 C -0.075 4.075 12 N -0.169 5.169 13 C -0.146 4.146 14 C -0.040 4.040 15 C -0.200 4.200 16 C 0.019 3.981 17 N -0.402 5.402 18 C 0.343 3.657 19 O -0.524 6.524 20 C -0.609 4.609 21 H 0.106 0.894 22 C -0.186 4.186 23 N -0.453 5.453 24 Si 0.814 3.186 25 H -0.203 1.203 26 H -0.175 1.175 27 H -0.181 1.181 28 C -0.131 4.131 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.260 0.740 38 H 0.201 0.799 39 H 0.204 0.796 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.042 0.958 47 H 0.229 0.771 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.278 8.752 17.372 20.155 hybrid contribution 0.488 -0.885 -0.676 1.216 sum -4.789 7.867 16.695 19.067 Atomic orbital electron populations 1.22044 0.94583 1.01780 1.01583 1.20218 0.95451 0.95520 0.93515 1.22267 1.01263 0.94551 1.01911 1.21792 1.01948 0.94157 0.96881 1.20731 0.98758 0.92869 0.82487 0.90468 1.45993 1.17892 1.61770 1.10260 1.20603 0.85045 0.78312 0.85683 1.90798 1.21221 1.49585 1.85017 1.19550 0.94008 1.09353 0.84859 1.28995 0.93570 0.91625 0.93354 1.81226 1.11144 1.10550 1.14007 1.21643 1.00272 1.00594 0.92050 1.20379 0.94663 0.95570 0.93386 1.22049 0.95834 1.00606 1.01514 1.21432 0.97497 0.82001 0.97133 1.45786 1.49335 1.05558 1.39548 1.18560 0.78493 0.89289 0.79385 1.90559 1.48482 1.68966 1.44356 1.21396 1.28547 0.90517 1.20452 0.89438 1.26937 0.92709 1.05899 0.93023 1.70193 1.20506 1.39352 1.15273 0.85122 0.79129 0.75221 0.79136 1.20316 1.17489 1.18127 1.21257 1.01877 0.92254 0.97724 0.92888 0.92390 0.92747 0.92343 0.92562 0.92306 0.92310 0.90567 0.74017 0.79909 0.79624 0.91012 0.90558 0.92949 0.90891 0.93251 0.94863 0.95831 0.77108 0.91742 0.92096 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.99 72.03 0.58 -1.97 16 2 C -0.05 -0.79 0.71 -52.23 -0.04 -0.82 16 3 C -0.14 -2.17 8.06 72.49 0.58 -1.58 16 4 C -0.11 -1.74 4.08 30.31 0.12 -1.61 16 5 C 0.16 2.53 2.27 44.72 0.10 2.63 16 6 H 0.08 1.60 5.55 -2.56 -0.01 1.58 16 7 N -0.71 -7.31 5.06 -443.04 -2.24 -9.55 16 8 C 0.52 6.85 7.79 87.66 0.68 7.54 16 9 O -0.59 -14.64 15.67 -3.04 -0.05 -14.69 16 10 C -0.04 -0.14 6.19 28.04 0.17 0.03 16 11 C 0.24 3.96 14.67 89.44 1.31 5.27 16 12 N -0.49 -12.36 18.54 20.01 0.37 -11.99 16 13 C -0.11 -2.05 3.64 30.31 0.11 -1.94 16 14 C -0.04 -0.91 0.53 -52.22 -0.03 -0.94 16 15 C -0.14 -3.36 7.84 72.03 0.56 -2.80 16 16 C 0.14 5.09 4.25 86.88 0.37 5.46 16 17 N -0.75 -30.75 4.90 -464.90 -2.28 -33.03 16 18 C 0.54 29.96 7.75 86.36 0.67 30.63 16 19 O -0.64 -41.73 15.02 -4.32 -0.06 -41.80 16 20 C -0.57 -31.13 9.54 24.83 0.24 -30.90 16 21 H 0.09 4.21 7.85 -2.92 -0.02 4.18 16 22 C 0.03 1.59 5.50 85.31 0.47 2.06 16 23 N -0.82 -49.58 11.83 21.84 0.26 -49.33 16 24 Si 0.99 39.57 29.56 68.60 2.03 41.60 16 25 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 27 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 28 C -0.09 -1.91 3.48 29.76 0.10 -1.81 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.98 8.07 -2.38 -0.02 0.96 16 31 H 0.05 1.04 4.66 -2.39 -0.01 1.03 16 32 H 0.06 0.85 8.08 -2.39 -0.02 0.83 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 35 H 0.06 1.06 8.12 -2.23 -0.02 1.04 16 36 H 0.08 1.06 8.10 -2.23 -0.02 1.04 16 37 H 0.42 1.53 8.59 -92.71 -0.80 0.73 16 38 H 0.18 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H 0.19 -0.92 8.14 -2.39 -0.02 -0.94 16 40 H 0.07 1.43 6.88 -2.22 -0.02 1.41 16 41 H 0.08 1.43 8.11 -2.23 -0.02 1.41 16 42 H 0.05 1.31 6.71 -2.39 -0.02 1.30 16 43 H 0.07 1.49 4.69 -2.39 -0.01 1.48 16 44 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 45 H 0.03 1.27 8.05 -2.39 -0.02 1.25 16 46 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.39 13.77 5.95 -92.70 -0.55 13.22 16 48 H 0.27 14.95 8.29 -92.71 -0.77 14.18 16 49 H 0.06 1.30 7.60 -1.71 -0.01 1.29 16 50 H 0.06 1.31 7.92 -1.72 -0.01 1.30 16 Total: -1.00 -89.59 396.36 3.67 -85.91 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -0.36 Total: 23.63 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 6.01 Total: 9.25 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -3.89 Total: -103.90 kcal Atomic # 8 Polarization: -56.37 SS G_CDS: -0.11 Total: -56.49 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -89.59 3.67 -85.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005914962.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.818 kcal (2) G-P(sol) polarization free energy of solvation -89.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds